IslandPath Analysis: Fervidobacterium nodosum Rt17-B1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 35.13   STD DEV: 3.24
Fervidobacterium nodosum Rt17-B1, complete genome - 1..1948941
1750 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.26	0	43..1377	+	444	154248706	-	Fnod_0001	-	chromosomal replication initiator protein DnaA
2	 41.53	+1	1453..1635	+	60	154248707	-	Fnod_0002	-	4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
3	 31.23	-1	1976..3829	+	617	154248708	-	Fnod_0003	-	hypothetical protein
4	 38.96	+1	3826..4926	+	366	154248709	-	Fnod_0004	-	basic membrane lipoprotein
5	 37.74	0	5136..6701	+	521	154248710	-	Fnod_0005	-	ABC transporter related
6	 38.84	+1	6698..7732	+	344	154248711	-	Fnod_0006	-	inner-membrane translocator
7	 37.71	0	7729..8688	+	319	154248712	-	Fnod_0007	-	inner-membrane translocator
8	 34.09	0	8734..9132	+	132	154248713	-	Fnod_0008	-	hypothetical protein
9	 26.61	-2	9261..9617	+	118	154248714	-	Fnod_0009	-	hypothetical protein
10	 35.87	0	9745..10020	+	91	154248715	-	Fnod_0010	-	histone family protein DNA-binding protein
11	 31.57	-1	10098..11342	-	414	154248716	-	Fnod_0011	-	metal dependent phosphohydrolase
12	 35.10	0	11361..13514	-	717	154248717	-	Fnod_0012	-	hypothetical protein
13	 29.80	-1	13511..14161	-	216	154248718	-	Fnod_0013	-	hypothetical protein
14	 29.31	-1	14158..15102	-	314	154248719	-	Fnod_0014	-	putative metal dependent phosphohydrolase
15	 32.16	0	15115..15969	-	284	154248720	-	Fnod_0015	-	putative adenylate/guanylate cyclase
16	 33.43	0	16022..17008	-	328	154248721	-	Fnod_0016	-	putative Chase2 sensor protein
17	 36.50	0	17156..17566	+	136	154248722	-	Fnod_0017	-	hypothetical protein
18	 35.70	0	17594..19282	+	562	154248723	-	Fnod_0018	-	sigma-54 dependent trancsriptional regulator
19	 33.76	0	19623..19859	+	78	154248724	-	Fnod_0019	-	hypothetical protein
20	 30.14	-1	19856..20074	+	72	154248725	-	Fnod_0020	-	hypothetical protein
21	 32.82	0	20095..20289	+	64	154248726	-	Fnod_0021	-	hypothetical protein
22	 36.80	0	20360..22552	-	730	154248727	-	Fnod_0022	-	fibronectin type III domain-containing protein
23	 36.64	0	22692..23990	-	432	154248728	-	Fnod_0023	-	UDP-glucose 6-dehydrogenase
24	 33.61	0	24184..27396	+	1070	154248729	-	Fnod_0024	-	polysaccharide export protein
25	 30.68	-1	27434..29395	+	653	154248730	-	Fnod_0025	-	lipopolysaccharide biosynthesis protein
26	 31.03	-1	29466..31289	-	607	154248731	-	Fnod_0026	-	hypothetical protein
27	 38.81	+1	33078..33278	+	66	154248732	-	Fnod_0028	-	cold-shock DNA-binding domain-containing protein
28	 35.29	0	33345..33548	-	67	154248733	-	Fnod_0029	-	FmdB family regulatory protein
29	 34.08	0	33673..34611	+	312	154248734	-	Fnod_0030	-	insertion element protein
30	 28.62	-2	34748..36253	-	501	154248735	-	Fnod_0031	-	diguanylate cyclase
31	 29.32	-1	36521..37318	-	265	154248736	-	Fnod_0032	-	pseudouridine synthase
32	 25.52	-2	37355..38467	+	370	154248737	-	Fnod_0033	-	hypothetical protein
33	 34.58	0	38748..39227	-	159	154248738	-	Fnod_0034	-	rubrerythrin
34	 36.38	0	39353..40303	+	316	154248739	-	Fnod_0035	-	ISCpe7, transposase
35	 32.65	0	40363..40803	-	146	154248740	-	Fnod_0036	-	cell wall biogenesis enzyme-like protein
36	 35.36	0	42584..43027	-	147	154248741	-	Fnod_0038	-	nucleoside-diphosphate kinase
37	 32.59	0	43009..43548	-	179	154248742	-	Fnod_0039	-	hypothetical protein
38	 34.11	0	43548..45608	-	686	154248743	-	Fnod_0040	-	glycosyl transferase family protein
39	 32.47	0	45605..46066	-	153	154248744	-	Fnod_0041	-	methylated-DNA--protein-cysteine methyltransferase
40	 35.67	0	46149..46661	+	170	154248745	-	Fnod_0042	-	CMP/dCMP deaminase zinc-binding
41	 37.83	0	46648..47469	+	273	154248746	-	Fnod_0043	-	2-oxoglutarate ferredoxin oxidoreductase subunit beta
42	 34.17	0	47466..48062	+	198	154248747	-	Fnod_0044	-	pyruvate ferredoxin/flavodoxin oxidoreductase
43	 32.68	0	48049..48510	+	153	154248748	-	Fnod_0045	-	diacylglycerol kinase
44	 37.09	0	48483..49520	+	345	154248749	-	Fnod_0046	-	chemotaxis-specific methylesterase
45	 32.55	0	49571..50977	+	468	154248750	-	Fnod_0047	-	S-layer domain-containing protein
46	 35.74	0	51074..52153	+	359	154248751	-	Fnod_0048	-	iron-containing alcohol dehydrogenase
47	 35.77	0	52238..53302	-	354	154248752	-	Fnod_0049	-	inner-membrane translocator
48	 37.07	0	53304..54347	-	347	154248753	-	Fnod_0050	-	inner-membrane translocator
49	 37.50	0	54340..55947	-	535	154248754	-	Fnod_0051	-	ABC transporter related
50	 38.78	+1	56049..57167	-	372	154248755	-	Fnod_0052	-	lipoprotein
51	 38.35	0	57450..59321	+	623	154248756	-	Fnod_0053	-	indolepyruvate ferredoxin oxidoreductase
52	 36.89	0	59318..59908	+	196	154248757	-	Fnod_0054	-	pyruvate ferredoxin/flavodoxin oxidoreductase
53	 37.72	0	59953..61638	+	561	154248758	-	Fnod_0055	-	pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein
54	 38.51	+1	61695..62525	+	276	154248759	-	Fnod_0056	-	pyruvate ferredoxin/flavodoxin oxidoreductase, beta subunit
55	 36.86	0	62522..63514	+	330	154248760	-	Fnod_0057	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
56	 31.63	-1	65239..66294	-	351	154248761	-	Fnod_0060	-	nuclease
57	 34.31	0	66294..67730	-	478	154248762	-	Fnod_0061	-	glycosyl transferase group 1
58	 38.77	+1	67873..69141	+	422	154248763	-	Fnod_0062	-	hypothetical protein
59	 43.66	+2	69205..70395	-	396	154248764	-	Fnod_0063	-	aspartate aminotransferase
60	 37.90	0	70723..71619	-	298	154248765	-	Fnod_0064	-	integrase catalytic region
61	 38.85	+1	71706..72122	-	138	154248766	-	Fnod_0065	-	transposase IS3/IS911 family protein
62	 33.81	0	72266..73525	-	419	154248767	-	Fnod_0066	-	transposase IS116/IS110/IS902 family protein
63	 31.15	-1	75432..77036	+	534	154248768	-	Fnod_0069	-	diguanylate cyclase
64	 38.67	+1	77379..78371	+	330	154248769	-	Fnod_0070	-	aspartate-semialdehyde dehydrogenase
65	 34.01	0	78377..79114	+	245	154248770	-	Fnod_0071	-	diaminopimelate epimerase
66	 38.14	0	79107..80021	+	304	154248771	-	Fnod_0072	-	dihydrodipicolinate synthase
67	 34.26	0	80018..80665	+	215	154248772	-	Fnod_0073	-	dihydrodipicolinate reductase
68	 37.47	0	80687..81436	+	249	154248773	-	Fnod_0074	-	tetrahydrodipicolinate succinyltransferase domain-containing protein
69	 38.82	+1	81443..82645	+	400	154248774	-	Fnod_0075	-	aspartate kinase
70	 35.98	0	82678..83811	+	377	154248775	-	Fnod_0076	-	aminotransferase class-III
71	 32.25	0	83783..84523	-	246	154248776	-	Fnod_0077	-	cobalt transport protein
72	 34.08	0	84648..85586	+	312	154248777	-	Fnod_0078	-	ISCpe7, transposase
73	 33.33	0	85627..86187	-	186	154248778	-	Fnod_0079	-	hypothetical protein
74	 35.97	0	86229..86987	-	252	154248779	-	Fnod_0080	-	hypothetical protein
75	 36.76	0	87016..88125	-	369	154248780	-	Fnod_0081	-	amidohydrolase
76	 32.66	0	88275..89162	-	295	154248781	-	Fnod_0082	-	hypothetical protein
77	 33.95	0	89338..90477	+	379	154248782	-	Fnod_0083	-	putative esterase
78	 34.42	0	90506..91516	+	336	154248783	-	Fnod_0084	-	hypothetical protein
79	 39.87	+1	91670..92938	+	422	154248784	-	Fnod_0085	-	serine hydroxymethyltransferase
80	 36.00	0	92960..94195	+	411	154248785	-	Fnod_0086	-	hypothetical protein
81	 32.96	0	94226..95290	-	354	154248786	-	Fnod_0087	-	DNA integrity scanning protein DisA
82	 39.17	+1	95422..96363	+	313	154248787	-	Fnod_0088	-	ROK family protein
83	 33.33	0	96411..96845	+	144	154248788	-	Fnod_0089	-	outer membrane chaperone Skp (OmpH)
84	 33.20	0	96882..97607	+	241	154248789	-	Fnod_0090	-	ABC transporter related
85	 32.82	0	97642..98229	+	195	154248790	-	Fnod_0091	-	uncharacterized protein-like protein
86	 36.91	0	98231..98593	+	120	154248791	-	Fnod_0092	-	response regulator receiver protein
87	 32.76	0	98580..99974	+	464	154248792	-	Fnod_0093	-	stage II sporulation E family protein
88	 36.92	0	100018..100575	+	185	154248793	-	Fnod_0094	-	translation elongation factor P
89	 29.84	-1	100603..100917	+	104	154248794	-	Fnod_0095	-	hypothetical protein
90	 29.58	-1	100961..101386	+	141	154248795	-	Fnod_0096	-	transcription antitermination protein NusB
91	 29.84	-1	101460..101975	+	171	154248796	-	Fnod_0097	-	hypothetical protein
92	 34.06	0	102004..102831	+	275	154248797	-	Fnod_0098	-	dihydropteroate synthase
93	 31.57	-1	102828..103565	+	245	154248798	-	Fnod_0099	-	RNA-binding S4 domain-containing protein
94	 34.38	0	103633..104685	-	350	154248799	-	Fnod_0100	-	von Willebrand factor type A
95	 38.51	+1	104699..105181	-	160	154248800	-	Fnod_0101	-	hypothetical protein
96	 33.80	0	105361..105789	-	142	154248801	-	Fnod_0102	-	heat shock protein Hsp20
97	 37.06	0	106115..107026	-	303	154248802	-	Fnod_0103	-	phosphoglycerate dehydrogenase
98	 40.77	+1	107028..108170	-	380	154248803	-	Fnod_0104	-	aminotransferase class V
99	 37.46	0	108588..109823	+	411	154248804	-	Fnod_0105	-	GntR family transcriptional regulator
100	 38.08	0	109825..110898	+	357	154248805	-	Fnod_0106	-	butyrate kinase
35.13	MEAN

3.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.