IslandPath Analysis: Sulfolobus solfataricus P2



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.39   STD DEV: 4.50
Sulfolobus solfataricus P2, complete genome - 1..2992245
2977 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 33.50	0	249..857	+	202	15896973	-	SSO0001	-	hypothetical protein
2	 35.00	0	889..2091	+	400	15896974	thiD-1	SSO0002	-	phosphomethylpyrimidine kinase (thiD-1)
3	 35.71	0	2088..2969	+	293	15896975	rbsK-1	SSO0004	-	ribokinase (rbsK-1)
4	 32.75	0	3057..3743	+	228	15896976	-	SSO0006	-	hypothetical protein
5	 32.23	0	3736..4458	+	240	15896977	-	SSO0007	-	hypothetical protein
6	 34.51	0	4500..5348	+	282	15896978	-	SSO0008	-	IS605-TnpB family transposase
7	 35.57	0	5351..6334	-	327	15896979	-	SSO0009	-	deacetylase, putative
8	 34.66	0	6376..7431	+	351	15896980	-	SSO0010	-	X-pro aminopeptidase
9	 37.74	0	7555..10479	+	974	15896981	-	SSO0011	-	hypothetical protein
10	 25.00	-2	10496..10651	+	51	15896982	-	SSO5023	-	hypothetical protein
11	 32.36	0	11143..11760	+	205	15896983	-	SSO0012	-	hypothetical protein
12	 33.89	0	11767..11946	-	59	15896984	-	SSO5027	-	hypothetical protein
13	 30.61	-1	12050..12673	+	207	15896985	-	SSO0013	-	hypothetical protein
14	 29.43	-1	12647..13030	-	127	15896986	-	SSO0014	-	hypothetical protein
15	 37.98	0	13020..13880	-	286	15896987	-	SSO0015	-	hypothetical protein
16	 36.92	0	13920..15314	-	464	15896988	-	SSO0016	-	transcription regulator (exsB) related protein
17	 35.45	0	15589..17808	+	739	15896989	-	SSO0017	-	ATP-dependent helicase
18	 30.81	-1	17801..19660	+	619	15896990	-	SSO0018	-	hypothetical protein
19	 34.24	0	19647..20195	-	182	15896991	moaB	SSO0019	-	molybdenum cofactor biosynthesis protein B (moaB)
20	 31.36	-1	20199..21008	-	269	15896992	-	SSO0020	-	hypothetical protein
21	 35.87	0	21513..22064	+	183	15896993	soxB-like	SSO0021	-	oxidoreductase, soxB-like, putative (soxB-like)
22	 33.33	0	22052..22492	-	146	15896994	-	SSO0022	-	hypothetical protein
23	 29.61	-1	22598..23215	+	205	15896995	-	SSO0023	-	hypothetical protein
24	 35.49	0	23195..23842	-	215	15896996	-	SSO0024	-	hypothetical protein
25	 33.50	0	23895..24512	+	205	15896997	-	SSO0025	-	hypothetical protein
26	 37.89	0	24484..25713	+	409	15896998	purT	SSO0026	-	phosphoribosylglycinamide formyltransferase 2
27	 37.88	0	25702..26757	-	351	15896999	-	SSO0028	-	acetylpolyamine aminohydrolase
28	 35.17	0	26805..27947	+	380	15897000	-	SSO0029	-	hypothetical protein
29	 35.01	0	27944..28660	+	238	15897001	-	SSO0031	-	hypothetical protein
30	 30.48	-1	28655..29461	-	268	15897002	-	SSO0032	-	hypothetical protein
31	 32.33	0	29591..30088	-	165	15897003	-	SSO0033	-	hypothetical protein
32	 35.60	0	30202..30864	+	220	15897004	soj	SSO0034	-	SOJ protein (soj)
33	 31.52	-1	30861..31190	+	109	15897005	-	SSO0035	-	hypothetical protein
34	 23.93	-2	31267..31734	+	155	15897006	-	SSO0036	-	hypothetical protein
35	 33.97	0	32275..34002	+	575	15897007	-	SSO0037	-	hypothetical protein
36	 30.87	-1	34256..34702	+	148	15897008	-	SSO0038	-	hypothetical protein
37	 33.51	0	34685..35257	-	190	15897009	-	SSO0039	-	hypothetical protein
38	 44.23	+1	35370..35828	+	152	15897010	-	SSO0040	-	transposon ISC1078 Orf1
39	 45.29	+1	35789..36382	+	197	15897011	-	SSO0041	-	second ORF in transposon ISC1078
40	 58.26	+2	36667..37320	-	217	15897012	-	SSO0042	-	second ORF in transposon ISC1234
41	 48.95	+2	37479..37811	-	110	15897013	-	SSO0043	-	transposon ISC1234 Orf1
42	 37.04	0	38481..40262	+	593	15897014	doxB	SSO0044	-	Heme bearing subunit I of the terminal oxidase (doxB)
43	 38.39	0	40264..41331	+	355	15897015	doxC	SSO0045	-	terminal oxidase, subunit (doxC)
44	 34.83	0	41328..41528	+	66	15897016	doxE	SSO5098	-	terminal oxidase, small hydrophobic subunit (doxE)
45	 31.32	-1	41790..42533	-	247	15897017	-	SSO0046	-	hypothetical protein
46	 38.72	0	42978..43367	+	129	15897018	-	SSO0048	-	transcriptional regulator
47	 37.63	0	43434..43829	+	131	15897019	-	SSO0049	-	hypothetical protein
48	 32.80	0	43863..44612	+	249	15897020	paaF-1	SSO0050	-	enoyl CoA hydratase (paaF-1)
49	 32.64	0	44609..45619	-	336	15897021	-	SSO0051	-	hypothetical protein
50	 34.68	0	45603..46343	-	246	15897022	-	SSO0053	-	ABC transporter, ATP binding protein
51	 35.95	0	46297..47328	+	343	15897023	hypE	SSO0052	-	hydrogenase expression/formation protein (hypE)
52	 33.52	0	47249..47788	+	179	15897024	-	SSO0054	-	hypothetical protein
53	 31.01	-1	47785..48516	+	243	15897025	-	SSO0055	-	hypothetical protein
54	 31.10	-1	48833..49279	+	148	15897026	-	SSO0057	-	hypothetical protein
55	 35.29	0	50238..51206	-	322	15897027	gnptA	SSO0060	-	UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase (gnptA)
56	 34.83	0	51207..52205	-	332	15897028	gdS-1	SSO0061	-	geranylgeranyl pyrophosphate synthetase (gdS-1)
57	 38.48	0	52207..53313	-	368	15897029	-	SSO0063	-	isopentenyl pyrophosphate isomerase
58	 35.54	0	53306..54031	-	241	15897030	-	SSO0064	-	hypothetical protein
59	 34.85	0	53977..54699	-	240	15897031	-	SSO0065	-	hypothetical protein
60	 34.74	0	54626..55480	-	284	15897032	-	SSO0066	-	hypothetical protein
61	 37.64	0	55477..56172	-	231	15897033	rps2P	SSO0067	-	30S ribosomal protein S2
62	 33.33	0	56169..56369	-	66	15897034	rpoN	SSO5140	-	DNA-directed RNA polymerase subunit N
63	 38.30	0	56376..56798	-	140	15897035	rps9p	SSO0068	-	30S ribosomal protein S9P
64	 37.11	0	56786..57235	-	149	15897036	rpl13p	SSO0069	-	50S ribosomal protein L13P
65	 34.17	0	57232..57591	-	119	15897037	rpl18E	SSO0070	-	50S ribosomal protein L18e
66	 35.71	0	57588..58385	-	265	15897038	rpoD	SSO0071	-	DNA-directed RNA polymerase, subunit D (rpoD)
67	 44.86	+1	58397..58795	-	132	15897039	rps11p	SSO0072	-	30S ribosomal protein S11P
68	 37.36	0	58779..59324	-	181	15897040	rps4p	SSO0073	-	30S ribosomal protein S4
69	 36.75	0	59335..59832	-	165	15897041	rps13p	SSO0074	-	30S ribosomal protein S13P
70	 33.72	0	59853..61151	-	432	15897042	-	SSO0076	-	hypothetical protein
71	 27.29	-2	61275..61688	+	137	15897043	-	SSO0077	-	hypothetical protein
72	 35.06	0	61719..62819	+	366	15897044	tyrS	SSO0078	-	tyrosyl-tRNA synthetase
73	 35.22	0	62827..64047	+	406	15897045	dnaG	SSO0079	-	DNA primase
74	 30.85	-1	64034..66328	-	764	15897046	dpo3	SSO0081	-	DNA polymerase III (DNA polymerase B3) (pfu polymerase). (dpo3)
75	 31.80	-1	66380..66835	-	151	15897047	-	SSO0082	-	N-terminal acetyltransferase complex ard1 subunit
76	 33.91	0	66854..67888	+	344	15897048	pelA	SSO0083	-	cell division protein pelota homolog (pelA)
77	 32.38	0	67859..68911	-	350	15897049	-	SSO0084	-	hypothetical protein
78	 34.02	0	68859..69437	-	192	15897050	-	SSO0085	-	hypothetical protein
79	 35.82	0	69430..69993	-	187	15897051	-	SSO0086	-	hypothetical protein
80	 32.99	0	70054..71214	+	386	15897052	-	SSO0087	-	hypothetical protein
81	 34.68	0	71195..72679	-	494	15897053	lysS	SSO0090	-	lysyl-tRNA synthetase (lysS)
82	 37.15	0	73708..74100	-	130	15897054	rpl7ae	SSO0091	-	50S ribosomal protein L7Ae
83	 35.71	0	74314..76041	-	575	15897055	gltX	SSO0093	-	glutamyl-tRNA synthetase
84	 34.64	0	76025..76711	-	228	15897056	-	SSO0094	-	hypothetical protein
85	 32.17	0	76708..77907	-	399	15897057	-	SSO0095	-	hypothetical protein
86	 36.25	0	78293..79423	-	376	15897058	-	SSO0097	-	hypothetical protein
87	 34.11	0	79467..80372	-	301	15897059	-	SSO0098	-	methionine aminopeptidase
88	 36.26	0	80426..81109	+	227	15897060	-	SSO0099	-	hypothetical protein
89	 32.84	0	81106..82512	+	468	15897061	pheS	SSO0100	-	phenylalanyl-tRNA synthetase subunit alpha
90	 32.54	0	82518..84152	+	544	15897062	pheT	SSO0101	-	phenylalanyl-tRNA synthetase subunit beta
91	 34.05	0	84240..84935	+	231	15897063	-	SSO0102	-	esterase, tropinesterase related protein
92	 35.53	0	84916..85734	-	272	15897064	cinA	SSO0103	-	competence damage-inducible protein A
93	 35.49	0	85752..86957	+	401	15897065	aspB-1	SSO0104	-	aspartate aminotransferase (aspB-1)
94	 33.68	0	86950..87813	-	287	15897066	-	SSO0106	-	hypothetical protein
95	 33.06	0	87870..88241	+	123	15897067	-	SSO0107	-	hypothetical protein
96	 32.57	0	88218..88610	-	130	15897068	-	SSO0108	-	hypothetical protein
97	 33.19	0	88678..89373	+	231	15897069	-	SSO0109	-	hypothetical protein
98	 33.55	0	89415..90317	+	300	15897070	-	SSO0110	-	hypothetical protein
99	 33.33	0	90305..90655	+	116	15897071	-	SSO0111	-	hypothetical protein
100	 35.46	0	90572..93199	-	875	15897072	-	SSO0112	-	ATP-dependent helicase
36.39	MEAN

4.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.