IslandPath Analysis: Candidatus Sulcia muelleri GWSS



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 21.52   STD DEV: 4.53
Candidatus Sulcia muelleri GWSS, complete genome - 1..245530
227 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 17.20	0	37..687	+	216	161833635	lipB	SMGWSS_001	-	lipoyl-[acyl-carrier-protein]-protein-N-lipoyltransferase
2	 20.13	0	712..3324	+	870	161833636	valS	SMGWSS_002	-	valyl-tRNA synthetase
3	 24.21	0	3326..5200	+	624	161833637	ftsH	SMGWSS_004	-	putative ATP-dependent metalloprotease
4	 16.08	-1	5212..6312	+	366	161833638	dnaN	SMGWSS_005	-	DNA polymerase III, beta subunit
5	 15.47	-1	6325..8547	+	740	161833639	pheT	SMGWSS_006	-	phenylalanyl-tRNA synthetase beta subunit
6	 16.25	-1	8581..9657	+	358	161833640	aroB	SMGWSS_007	-	3-dehydroquinate synthase
7	 23.71	0	9644..12106	+	820	161833641	gyrA	SMGWSS_008	-	type IV DNA gyrase A subunit
8	 17.34	0	12106..12624	+	172	161833642	-	SMGWSS_009	-	putative methyltransferase
9	 22.49	0	12654..14498	+	614	161833643	rpsA	SMGWSS_010	-	putative ribosomal protein S1
10	 22.59	0	14754..16028	+	424	161833644	-	SMGWSS_011	-	putative type II NADH dehydrogenase
11	 26.55	+1	16020..17183	-	387	161833645	rho	SMGWSS_012	-	transcription termination factor Rho
12	 23.60	0	17237..18304	+	355	161833646	prfA	SMGWSS_013	-	peptide chain release factor 1
13	 22.14	0	18433..18861	+	142	161833647	aroD	SMGWSS_014	-	3-dehydroquinate dehydratase
14	 25.93	0	18865..20121	-	418	161833648	fabF	SMGWSS_015	-	putative 3-oxoacyl-[acyl-carrier-protein] synthase II
15	 22.22	0	20102..20353	-	83	161833649	acpP	SMGWSS_016	-	acyl carrier protein
16	 14.33	-1	20365..20664	-	99	161833650	atpC	SMGWSS_017	-	putative ATP synthase F1, epsilon subunit
17	 28.74	+1	20664..22166	-	500	161833651	atpD	SMGWSS_018	-	F0F1 ATP synthase subunit beta
18	 19.58	0	22188..22943	+	251	161833652	ksgA	SMGWSS_019	-	dimethyladenosine transferase
19	 20.45	0	23063..23644	+	193	161833653	-	SMGWSS_021	-	putative signal peptidase
20	 21.41	0	23895..25538	-	547	161833654	glnS	SMGWSS_023	-	glutaminyl-tRNA synthetase
21	 24.46	0	25544..27379	-	611	161833655	gidA	SMGWSS_024	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
22	 13.85	-1	27369..27794	-	141	161833656	-	SMGWSS_025	-	hypothetical protein
23	 20.98	0	27806..28501	+	231	161833657	-	SMGWSS_026	-	S-adenosyl-L-methionine dependent methyltransferase
24	 28.29	+1	28623..29534	+	303	161833658	prsA	SMGWSS_028	-	ribose-phosphate pyrophosphokinase
25	 19.05	0	29531..30097	+	188	161833659	rplY	SMGWSS_029	-	ribosomal protein L25
26	 17.40	0	30171..30917	+	248	161833660	lgt	SMGWSS_030	-	prolipoprotein diacylglyceryl transferase
27	 15.85	-1	30868..31725	-	285	161833661	atpG	SMGWSS_031	-	ATP synthase F1, gamma subunit
28	 26.50	+1	31725..33305	-	526	161833662	atpA	SMGWSS_032	-	ATP synthase F1, alpha subunit
29	 12.01	-2	33283..33615	-	110	161833663	atpH	SMGWSS_033	-	highly suspect ATP synthase F1, delta subunit
30	 13.93	-1	33623..34297	-	224	161833664	atpF	SMGWSS_035	-	ATP synthase F0 subunit b
31	 36.00	+2	34331..34555	-	74	161833665	atpE	SMGWSS_036	-	ATP synthase F0 subunit c
32	 16.90	-1	34560..35612	-	350	161833666	atpB	SMGWSS_037	-	ATP synthase F0 subunit a
33	 17.87	0	35794..37035	-	413	161833667	lysC	SMGWSS_038	-	putative aspartate kinase
34	 19.47	0	37171..37740	-	189	161833668	-	SMGWSS_039	-	MarC family integral membrane protein
35	 24.43	0	37816..38871	-	351	161833669	leuB	SMGWSS_040	-	3-isopropylmalate dehydrogenase
36	 18.03	0	38874..39461	-	195	161833670	leuD	SMGWSS_041	-	3-isopropylmalate dehydratase small subunit
37	 26.84	+1	39469..40854	-	461	161833671	leuC	SMGWSS_042	-	3-isopropylmalate dehydratase large subunit
38	 26.25	+1	40856..42013	-	385	161833672	leuA	SMGWSS_043	-	2-isopropylmalate synthase
39	  8.82	-2	42065..42427	-	120	161833673	-	SMGWSS_044	-	hypothetical protein
40	 17.59	0	42497..43798	+	433	161833674	tyrS	SMGWSS_045	-	tyrosyl-tRNA synthetase
41	 19.61	0	43913..46579	+	888	161833675	leuS	SMGWSS_046	-	leucyl-tRNA synthetase
42	 23.16	0	46732..47616	+	294	161833676	korB	SMGWSS_048	-	2-oxoglutarate ferredoxin oxidoreductase beta subunit
43	 18.88	0	47610..48854	+	414	161833677	serS	SMGWSS_049	-	seryl-tRNA synthetase
44	 18.38	0	48858..49091	+	77	161833678	rpmB	SMGWSS_050	-	50S ribosomal subunit protein L28
45	 18.03	0	49072..49254	+	60	161833679	rpmG	SMGWSS_051	-	50S ribosomal protein L33
46	 12.20	-2	49261..49383	+	40	161833680	-	SMGWSS_052	-	hypothetical protein
47	 17.85	0	49486..50499	-	337	161833681	rluD	SMGWSS_054	-	ribosomal large subunit pseudouridine synthase D
48	 20.05	0	50463..51215	+	250	161833682	truA	SMGWSS_055	-	tRNA pseudouridine synthase A
49	 24.23	0	51207..55730	-	1507	161833683	rpoC	SMGWSS_056	-	DNA-directed RNA polymerase beta' subunit
50	 24.03	0	55741..59727	-	1328	161833684	rpoB	SMGWSS_057	-	DNA-directed RNA polymerase beta subunit
51	 26.39	+1	59737..60168	-	143	161833685	rplL	SMGWSS_058	-	50S ribosomal subunit protein L7/L12
52	 18.54	0	60209..60634	-	141	161833686	rplJ	SMGWSS_059	-	50S ribosomal subunit protein L10
53	 25.00	0	60631..61266	-	211	161833687	rplA	SMGWSS_060	-	50S ribosomal subunit protein L1
54	 25.30	0	61274..61696	-	140	161833688	rplK	SMGWSS_061	-	50S ribosomal subunit protein L11
55	 31.82	+2	61944..63131	-	395	161833689	tufA	SMGWSS_063	-	elongation factor Tu
56	 18.33	0	63607..64899	+	430	161833690	-	SMGWSS_068	-	cytochrome c
57	 23.65	0	64916..67849	+	977	161833691	-	SMGWSS_069	-	molybdopterin oxidoreductase, iron-sulfur binding subunit
58	 28.26	+1	67851..69209	+	452	161833692	-	SMGWSS_070	-	molybdopterin oxidoredutase membrane subunit
59	 19.51	0	69206..69733	+	175	161833693	-	SMGWSS_071	-	hypothetical protein
60	 23.19	0	69773..70324	+	183	161833694	-	SMGWSS_072	-	hypothetical protein
61	 16.09	-1	70361..71566	+	401	161833695	-	SMGWSS_073	-	hypothetical protein
62	 13.57	-1	71558..71977	-	139	161833696	sufE	SMGWSS_074	-	cysteine desulfurase SufE subunit
63	 17.23	0	71993..72973	-	326	161833697	ispB	SMGWSS_075	-	polyprenyl synthetase
64	 23.13	0	78159..79334	+	391	161833698	sucC	SMGWSS_081	-	succinyl-CoA synthetase beta subunit
65	 29.17	+1	79491..79658	-	55	161833699	-	SMGWSS_082	-	putative Sec-independent tatA/E protein translocase
66	 25.76	0	79739..80398	+	219	161833700	clpP	SMGWSS_083	-	ATP-dependent Clp protease, proteolytic subunit
67	 22.58	0	80411..81442	+	343	161833701	clpX	SMGWSS_084	-	ATP-dependent protease ATP-binding subunit
68	 20.74	0	81443..83998	+	851	161833702	mutS	SMGWSS_085	-	DNA mismatch repair protein MutS
69	 22.27	0	84159..84827	-	222	161833703	rpsB	SMGWSS_088	-	30S ribosomal subunit protein S2
70	 22.83	0	84834..85214	-	126	161833704	rpsI	SMGWSS_089	-	30S ribosomal subunit protein S9
71	 18.54	0	85219..85671	-	150	161833705	rplM	SMGWSS_090	-	50S ribosomal protein L13
72	 28.00	+1	85762..87654	+	630	161833706	dnaK	SMGWSS_091	-	molecular chaperone DnaK
73	 21.49	0	87687..88235	+	182	161833707	infC	SMGWSS_092	-	translation initiation factor 3
74	 17.68	0	88241..88438	+	65	161833708	rpmI	SMGWSS_093	-	50S ribosomal subunit protein L35
75	 21.76	0	88445..88807	+	120	161833709	rplT	SMGWSS_094	-	50S ribosomal subunit protein L20
76	 15.79	-1	88783..89352	-	189	161833710	def	SMGWSS_095	-	peptide deformylase
77	 17.03	0	89358..89774	-	138	161833711	-	SMGWSS_096	-	Holliday junction resolvase-like protein
78	 25.75	0	89814..90644	+	276	161833712	dapD	SMGWSS_097	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
79	 24.36	0	90672..91718	+	348	161833713	ilvE	SMGWSS_098	-	branched-chain amino acid aminotransferase
80	 18.61	0	91715..93052	-	445	161833714	-	SMGWSS_099	-	tRNA nucleotidyltransferase
81	 20.91	0	93060..94202	-	380	161833715	trmU	SMGWSS_100	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
82	 28.07	+1	94199..95320	-	373	161833716	dnaJ	SMGWSS_101	-	chaperone protein dnaJ
83	 17.98	0	95333..95866	-	177	161833717	grpE	SMGWSS_102	-	heat shock protein GrpE (Hsp-70 cofactor)
84	 22.89	0	95982..97379	+	465	161833718	lpdA	SMGWSS_103	-	dihydrolipoamide dehydrogenase
85	 25.70	0	97467..98462	+	331	161833719	-	SMGWSS_104	-	M42 family metalloprotease
86	 12.75	-1	98449..98754	-	101	161833720	-	SMGWSS_105	-	putative ribosome-binding factor A
87	 19.34	0	98831..100195	+	454	161833721	trmE	SMGWSS_106	-	tRNA modification GTPase TrmE
88	 20.25	0	100318..104553	+	1411	161833722	-	SMGWSS_108	-	putative DNA polymerase III, alpha subunit (dnaE)/DNA polymerase III, epsilon subunit (dnaQ) fusion
89	 23.01	0	104576..106318	+	580	161833723	-	SMGWSS_109	-	putative argininosuccinate synthase (argG)/acetyltransferase activity of N-acetylglutamate synthase (argA)
90	 19.94	0	106311..107288	+	325	161833724	argC	SMGWSS_110	-	N-acetyl-gamma-glutamyl-phosphate reductase
91	 22.60	0	107288..108433	+	381	161833725	argD	SMGWSS_111	-	acetylornithine aminotransferase
92	 23.86	0	108423..109499	+	358	161833726	carA	SMGWSS_112	-	carbamoyl phosphate synthase small subunit
93	 23.42	0	109496..112684	+	1062	161833727	carB	SMGWSS_113	-	carbamyl phosphate synthase large subunit
94	 23.30	0	112684..113640	+	318	161833728	argF	SMGWSS_114	-	putative ornithine carbamoyltransferase
95	 20.64	0	113637..114416	+	259	161833729	argB	SMGWSS_115	-	acetylglutamate kinase
96	 24.81	0	114407..115474	+	355	161833730	-	SMGWSS_116	-	putative acetylornithine deacetylase (argE)/succinyl-diaminopimelate desuccinylase (dapE)
97	 18.52	0	115708..116193	+	161	161833731	aroK	SMGWSS_119	-	shikimate kinase
98	 17.39	0	116201..117511	+	436	161833732	tilS	SMGWSS_120	-	putative tRNA(Ile)-lysidine synthetase
99	 19.71	0	117501..118256	-	251	161833733	trpA	SMGWSS_121	-	tryptophan synthase subunit alpha
100	 24.78	0	118249..120036	-	595	161833734	-	SMGWSS_122	-	bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta
21.52	MEAN

4.53	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.