IslandPath Analysis: Haloarcula marismortui ATCC 43049



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.96   STD DEV: 3.96
Haloarcula marismortui ATCC 43049 chromosome II, complete sequence - 1..288050
281 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 52.65	-1	6187..6450	+	87	55380075	-	rrnB0003	-	hypothetical protein
2	 52.87	-1	6826..8064	-	412	55380076	cdc6b	rrnB0004	-	cell division control protein 6 homolog 1
3	 46.46	-2	9123..9221	+	32	55380077	-	rrnB0005	-	hypothetical protein
4	 55.78	0	10321..11229	-	302	55380078	-	rrnB0006	-	acetamidase/formamidase family protein
5	 46.46	-2	11405..11602	-	65	55380079	-	rrnB0007	-	hypothetical protein
6	 58.11	0	12317..13309	+	330	55380080	tnp	rrnB0008	-	ISH11 transposase
7	 51.78	-1	13318..14271	-	317	55380081	-	rrnB0009	-	hypothetical protein
8	 56.82	0	14481..14612	+	43	55380082	-	rrnB0010	-	hypothetical protein
9	 54.85	0	14832..15068	-	78	55380083	-	rrnB0011	-	hypothetical protein
10	 61.92	0	15206..16468	+	420	55380084	-	rrnB0013	-	hypothetical protein
11	 59.49	0	16468..16941	+	157	55380085	-	rrnB0014	-	hypothetical protein
12	 58.41	0	16941..17267	+	108	55380086	-	rrnB0015	-	hypothetical protein
13	 49.37	-2	17711..18109	-	132	55380087	-	rrnB0016	-	hypothetical protein
14	 50.54	-1	18285..18470	-	61	55380088	-	rrnB0017	-	hypothetical protein
15	 56.47	0	18736..18990	+	84	55380089	flaA1	rrnB0018	-	flagellin A precursor
16	 53.47	-1	19435..19881	+	148	55380090	-	rrnB0019	-	hypothetical protein
17	 55.33	0	20762..20911	-	49	55380091	-	rrnB0020	-	hypothetical protein
18	 53.93	-1	21036..21506	+	156	55380092	-	rrnB0021	-	hypothetical protein
19	 57.68	0	21638..22249	+	203	55380093	-	rrnB0022	-	hypothetical protein
20	 54.79	0	22552..22854	-	100	55380094	-	rrnB0023	-	hypothetical protein
21	 48.59	-2	23087..23263	-	58	55380095	-	rrnB0024	-	hypothetical protein
22	 51.32	-1	24679..24867	+	62	55380096	-	rrnB0025	-	hypothetical protein
23	 52.54	-1	24975..25250	-	91	55380097	-	rrnB0026	-	hypothetical protein
24	 51.56	-1	25657..26232	+	191	55380098	-	rrnB0027	-	acetyltransferase
25	 58.11	0	26327..27319	-	330	55380099	tnp	rrnB0028	-	ISH11 transposase
26	 56.99	0	27616..28266	-	216	55380100	yhcR4	rrnB0029	-	phosphoesterase
27	 51.54	-1	28798..30027	-	409	55380101	-	rrnB0030	-	hypothetical protein
28	 59.62	0	30160..30471	+	103	55380102	-	rrnB0031	-	hypothetical protein
29	 59.23	0	30667..31110	-	147	55380103	-	rrnB0033	-	tautomerase
30	 60.29	0	31355..31558	+	67	55380104	-	rrnB0034	-	hypothetical protein
31	 63.08	+1	31619..33235	+	538	55380105	nadC2	rrnB0036	-	sodium dependent transporter
32	 65.73	+1	33495..33707	+	70	55380106	-	rrnB0037	-	hypothetical protein
33	 58.78	0	33842..34285	+	147	55380107	usp11	rrnB0038	-	universal stress protein
34	 54.33	0	34545..35606	-	353	55380108	-	rrnB0040	-	hypothetical protein
35	 56.44	0	36045..37256	+	403	55380109	xseA2	rrnB0041	-	exodeoxyribonuclease VII large subunit
36	 53.11	-1	37253..37429	+	58	55380110	exoVIIB	rrnB0042	-	exonuclease VII small subunit
37	 63.80	+1	38076..38354	+	92	55380111	-	rrnB0043	-	hypothetical protein
38	 53.40	-1	38682..38975	-	97	55380112	-	rrnB0044	-	hypothetical protein
39	 52.52	-1	40283..40600	+	105	55380113	-	rrnB0045	-	hypothetical protein
40	 62.56	+1	40791..41813	-	340	55380114	tnp	rrnB0046	-	phage integrase
41	 61.47	0	42261..42587	+	108	55380115	-	rrnB0047	-	hypothetical protein
42	 58.62	0	42593..43462	+	289	55380116	apbE	rrnB0049	-	thiamine biosynthesis protein
43	 56.25	0	43446..43733	+	95	55380117	-	rrnB0050	-	hypothetical protein
44	 58.56	0	43733..44275	+	180	55380118	-	rrnB0051	-	hypothetical protein
45	 60.54	0	44272..44793	-	173	55380119	-	rrnB0052	-	regulatory protein
46	 56.94	0	44797..45084	-	95	55380120	-	rrnB0053	-	hypothetical protein
47	 53.14	-1	45423..45947	-	174	55380121	-	rrnB0055	-	hypothetical protein
48	 55.42	0	46040..46546	-	168	55380122	-	rrnB0056	-	hypothetical protein
49	 57.18	0	46543..46911	-	122	55380123	-	rrnB0058	-	hypothetical protein
50	 62.75	+1	47266..47367	-	33	55380124	-	rrnB0059	-	hypothetical protein
51	 57.84	0	47958..48059	-	33	55380125	-	rrnB0060	-	hypothetical protein
52	 56.52	0	48308..48790	-	160	55380126	-	rrnB0061	-	hypothetical protein
53	 52.58	-1	48783..49655	-	290	55380127	parA3	rrnB0062	-	ParA family chromosome partitioning ATPase
54	 50.20	-1	50205..51485	-	426	55380128	cdc6a	rrnB0063	-	cell division control protein 6 homolog 1
55	 59.50	0	52430..52750	+	106	55380129	-	rrnB0064	-	hypothetical protein
56	 60.73	0	52808..53632	+	274	55380130	-	rrnB0065	-	hypothetical protein
57	 55.48	0	53886..56192	-	768	55380131	-	rrnB0067	-	hypothetical protein
58	 59.55	0	56269..57210	-	313	55380132	-	rrnB0068	-	hypothetical protein
59	 56.67	0	57227..57706	-	159	55380133	-	rrnB0069	-	hypothetical protein
60	 59.09	0	57706..59499	-	597	55380134	speE	rrnB0070	-	spermidine synthase
61	 61.83	0	61341..62249	+	302	55380135	-	rrnB0071	-	hypothetical protein
62	 53.85	-1	62373..62684	-	103	55380137	-	rrnB0073	-	hypothetical protein
63	 57.10	0	62674..64074	+	466	55380136	-	rrnB0075	-	glycosyl transferase
64	 57.45	0	62686..63108	-	140	55380138	-	rrnB0074	-	transcription regulator
65	 50.33	-1	64267..64419	-	50	55380139	-	rrnB0077	-	hypothetical protein
66	 54.90	0	64483..64686	+	67	55380140	-	rrnB0076	-	hypothetical protein
67	 55.56	0	65040..65192	+	50	55380141	-	rrnB0078	-	hypothetical protein
68	 58.59	0	65459..66040	+	193	55380142	-	rrnB0079	-	hypothetical protein
69	 61.18	0	66104..67123	+	339	55380143	-	rrnB0080	-	hypothetical protein
70	 51.42	-1	67124..67615	-	163	55380144	-	rrnB0081	-	hypothetical protein
71	 52.03	-1	67605..67850	-	81	55380145	-	rrnB0082	-	hypothetical protein
72	 55.65	0	68603..69346	-	247	55380146	ski-1	rrnB0083	-	putative 2-component system sensor kinase
73	 58.12	0	69441..69791	+	116	55380147	-	rrnB0084	-	hypothetical protein
74	 53.75	-1	69788..70120	+	110	55380148	-	rrnB0085	-	hypothetical protein
75	 57.71	0	70117..70395	+	92	55380149	-	rrnB0086	-	hypothetical protein
76	 60.09	0	70479..71132	+	217	55380150	ski-2	rrnB0087	-	sensor protein
77	 58.63	0	71132..71467	+	111	55380151	-	rrnB0089	-	transcription regulator
78	 59.29	0	72599..74197	-	532	55380152	aldY7	rrnB0092	-	aldehyde dehydrogenase
79	 51.09	-1	74444..75040	+	198	55380153	-	rrnB0093	-	hypothetical protein
80	 52.55	-1	75104..75925	+	273	55380154	tnp	rrnB0094	-	putative transposase
81	 60.36	0	76399..77919	+	506	55380155	aldY6	rrnB0095	-	aldehyde dehydrogenase
82	 58.94	0	77913..79853	-	646	55380156	-	rrnB0096	-	hypothetical protein
83	 59.20	0	80167..80688	+	173	55380157	hcp7	rrnB0097	-	halocyanin precursor-like
84	 59.79	0	80863..81705	+	280	55380158	-	rrnB0098	-	hypothetical protein
85	 60.32	0	81785..81910	+	41	55380159	-	rrnB0099	-	hypothetical protein
86	 59.76	0	82068..82313	+	81	55380160	-	rrnB0100	-	hypothetical protein
87	 59.40	0	82920..83717	+	265	55380161	suhB2	rrnB0102	-	inositol-1-monophosphatase
88	 61.12	0	83847..85181	+	444	55380162	rbsB-3	rrnB0103	-	putative ABC transporter substrate binding protein
89	 63.01	+1	85206..86108	+	300	55380163	malFG-9	rrnB0104	-	sugar ABC transport system permease protein
90	 63.28	+1	86110..87024	+	304	55380164	malFG-10	rrnB0105	-	sugar ABC transporter permease protein
91	 61.32	0	87080..88219	+	379	55380165	ugpC2	rrnB0106	-	sugar ABC transporter ATP-binding subunit
92	 60.11	0	88301..89779	+	492	55380166	-	rrnB0107	-	putative carbbohydrate responsive phospholipase
93	 60.23	0	90062..90931	-	289	55380167	-	rrnB0108	-	hypothetical protein
94	 61.03	0	91203..91415	-	70	55380168	-	rrnB0109	-	hypothetical protein
95	 62.33	+1	91415..91714	-	99	55380169	-	rrnB0111	-	hypothetical protein
96	 63.24	+1	92322..92642	-	106	55380170	-	rrnB0112	-	DNA binding domain-containing protein
97	 54.10	0	92942..94501	-	519	55380171	gatA2	rrnB0113	-	amidase
98	 52.84	-1	94742..95023	-	93	55380172	-	rrnB0114	-	hypothetical protein
99	 58.51	0	95726..96154	+	142	55380173	-	rrnB0115	-	hypothetical protein
100	 50.11	-1	97447..97905	+	152	55380174	-	rrnB0116	-	hypothetical protein
57.96	MEAN

3.96	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.