IslandPath Analysis: Francisella tularensis subsp. holarctica



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 32.49   STD DEV: 3.39
Francisella tularensis subsp. holarctica, complete genome - 1..1895994
1754 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.23	0	275..1750	+	491	89255450	-	FTL_0001	-	chromosomal replication initiator protein dnaA
2	 27.90	-1	1787..2890	+	367	89255451	-	FTL_0002	-	DNA polymerase III, beta chain
3	 26.48	-1	2887..3324	-	145	89255452	-	FTL_0003	-	membrane protein, fragment
4	 31.44	0	3336..4216	-	293	89255453	isftu1	FTL_0004	-	transposase
5	 32.08	0	4306..4944	+	212	89255454	-	FTL_0005	-	Na+/H+ antiporter NHAP, fragment
6	 35.26	0	4954..6354	-	466	89255455	-	FTL_0006	-	indolepyruvate decarboxylase
7	 37.25	+1	6904..7107	-	67	89255456	-	FTL_0007	-	hypothetical protein
8	 34.85	0	7181..8104	+	307	89255457	-	FTL_0008	-	peptidase
9	 35.74	0	8194..8733	+	179	89255458	-	FTL_0009	-	outer membrane protein
10	 30.26	0	8869..9291	+	140	89255459	-	FTL_0010	-	thiosulfate sulfurtransferase
11	 35.78	0	9318..9767	+	149	89255460	-	FTL_0011	-	preprotein translocase subunit SecB
12	 38.33	+1	9789..10868	+	359	89255461	-	FTL_0012	-	recombinase A protein
13	 27.81	-1	10855..11307	+	150	89255462	-	FTL_0013	-	regulatory protein recX
14	 34.17	0	11480..11956	+	158	89255463	-	FTL_0014	-	single-strand binding protein
15	 34.03	0	12062..13216	+	384	89255464	-	FTL_0015	-	propionate kinase
16	 35.57	0	13226..15322	+	698	89255465	-	FTL_0016	-	phosphate acetyltransferase
17	 31.56	0	16234..17114	-	293	89255466	isftu1	FTL_0018	-	transposase
18	 28.28	-1	17176..17472	-	98	89255467	-	FTL_0019	-	sugar transferase, fragment
19	 34.91	0	17609..19381	-	590	89255468	aspS	FTL_0020	-	aspartyl-tRNA synthetase
20	 34.09	0	19555..20736	-	393	89255469	-	FTL_0021	-	MFS superfamily proline/ betaine transporter
21	 31.44	0	21378..22258	+	293	89255470	isftu1	FTL_0023	-	transposase
22	 29.82	0	23205..24428	-	407	89255471	-	FTL_0024	-	serine transporter
23	 24.36	-2	24755..24988	-	77	89255472	-	FTL_0025	-	hypothetical protein
24	 30.42	0	25480..25788	+	102	89255473	-	FTL_0026	-	3-hydroxyisobutyrate dehydrogenase
25	 26.40	-1	25840..26358	+	172	89255474	-	FTL_0027	-	3-hydroxyisobutyrate dehydrogenase
26	 32.68	0	26372..27292	-	306	89255475	-	FTL_0028	-	aspartate carbamoyltransferase
27	 36.53	+1	27434..30718	-	1094	89255476	carB	FTL_0029	-	carbamoyl phosphate synthase large subunit
28	 37.36	+1	30723..31889	-	388	89255477	-	FTL_0030	-	carbamoyl phosphate synthase small subunit
29	 34.00	0	32306..33361	+	351	89255478	-	FTL_0031	-	acid phosphatase
30	 30.40	0	33485..34165	-	226	89255479	-	FTL_0032	-	thiopurine S-methyltransferase
31	 38.38	+1	34297..35643	+	448	89255480	-	FTL_0033	-	dihydroorotase
32	 25.94	-1	35671..36711	-	346	89255481	-	FTL_0034	-	hypothetical protein
33	 35.13	0	37248..37526	+	92	89255482	-	FTL_0035	-	hypothetical protein
34	 32.61	0	37915..38466	+	183	89255483	-	FTL_0036	-	hypothetical protein
35	 31.62	0	38582..39634	-	350	89255484	-	FTL_0037	-	hypothetical protein
36	 28.16	-1	39621..40586	-	321	89255485	-	FTL_0038	-	HlyD family secretion protein
37	 28.68	-1	40675..41082	-	135	89255486	-	FTL_0039	-	hypothetical protein
38	 31.49	0	41208..42077	+	289	89255487	-	FTL_0040	-	LysR family transcriptional regulator
39	 34.95	0	42078..42449	-	123	89255488	-	FTL_0041	-	hypothetical protein
40	 29.51	0	42739..43365	-	208	89255489	isftu2	FTL_0042	-	transposase
41	 31.51	0	43704..44252	+	182	89255490	-	FTL_0043	-	chorismate mutase
42	 35.81	0	44307..47540	-	1077	89255491	-	FTL_0044	-	transglutaminase-like domain-containing protein
43	 35.23	0	47960..48592	+	210	89255492	-	FTL_0045	-	orotidine 5'-phosphate decarboxylase
44	 33.47	0	48594..49340	+	248	89255493	-	FTL_0046	-	diyroorotate dehydrogenase
45	 31.58	0	49699..49869	-	56	89255494	-	FTL_0047	-	hypothetical protein
46	 33.48	0	49873..50535	-	220	89255495	-	FTL_0048	-	prephenate dehydrogenase.
47	 31.28	0	50803..51240	-	145	89255496	-	FTL_0049	-	D-tyrosyl-tRNA deacylase
48	 30.57	0	51483..52169	-	228	89255497	-	FTL_0050	-	hypothetical protein
49	 34.84	0	52317..52715	-	132	89255498	-	FTL_0051	-	hypothetical protein
50	 29.07	-1	52734..53273	-	179	89255499	-	FTL_0052	-	hypothetical protein
51	 33.01	0	53270..54202	-	310	89255500	-	FTL_0053	-	Beta-fructofuranosidase
52	 31.56	0	54408..55288	-	293	89255501	isftu1	FTL_0054	-	transposase
53	 29.89	0	55312..55863	-	183	89255502	-	FTL_0055	-	hypothetical protein
54	 34.53	0	56134..56799	-	221	89255503	-	FTL_0056	-	NADH dehydrogenase
55	 33.77	0	57202..57894	+	230	89255504	-	FTL_0057	-	hypothetical protein
56	 33.17	0	57891..59096	-	401	89255505	-	FTL_0058	-	aromatic amino acid HAAP transporter
57	 31.55	0	59196..59813	+	205	89255506	-	FTL_0059	-	methyltransferase glucose-inhibited cell division protein
58	 33.33	0	59810..60478	+	222	89255507	-	FTL_0060	-	hypothetical protein
59	 31.86	0	60471..61355	-	294	89255508	-	FTL_0061	-	hypothetical protein
60	 30.69	0	61557..62048	-	163	89255509	-	FTL_0062	-	transcription regulator
61	 30.52	0	62556..63692	+	378	89255510	-	FTL_0063	-	major facilitator transporter
62	 35.01	0	66214..66810	+	198	89255511	-	FTL_0068	-	phosphoheptose isomerase
63	 29.97	0	66818..67174	+	118	89255512	-	FTL_0069	-	outer membrane lipoprotein
64	 33.70	0	67248..67520	-	90	89255513	rpsT	FTL_0070	-	30S ribosomal protein S20
65	 37.65	+1	67790..69574	+	594	89255514	-	FTL_0071	-	GTP-binding protein LepA
66	 36.57	+1	69588..70667	+	359	89255515	-	FTL_0072	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
67	 33.94	0	70687..71679	-	330	89255516	-	FTL_0073	-	hypothetical protein
68	 33.33	0	71761..72279	-	172	89255517	-	FTL_0074	-	peptide deformylase
69	 35.36	0	72282..72725	-	147	89255518	-	FTL_0075	-	riboflavin synthase beta subunit (6,7-dimethl-8-ribityllumazine synthase)
70	 35.64	0	72735..73946	-	403	89255519	-	FTL_0076	-	riboflavin biosynthesis protein ribA/GTP-cyclohydrolase II
71	 31.02	0	73939..74544	-	201	89255520	-	FTL_0077	-	riboflavin synthase subunit alpha
72	 34.08	0	74537..75604	-	355	89255521	-	FTL_0078	-	riboflavin biosynthesis protein ribD
73	 29.51	0	75931..76557	-	208	89255522	isftu2	FTL_0079	-	transposase
74	 32.17	0	76775..77604	-	276	89255523	isftu1	FTL_0080	-	transposase
75	 32.36	0	78577..79092	-	171	89255524	-	FTL_0082	-	B-type cytochrome
76	 32.73	0	80142..81293	+	383	89255525	-	FTL_0085	-	Na(+)/H(+) antiporter 1
77	 29.58	0	81358..82077	+	239	89255526	-	FTL_0086	-	hypothetical protein
78	 34.41	0	82083..82823	-	246	89255527	-	FTL_0087	-	acetyltransferase protein
79	 33.60	0	82837..83589	-	250	89255528	-	FTL_0088	-	acetyltransferase protein
80	 37.04	+1	83752..84075	-	107	89255529	-	FTL_0089	-	ferredoxin
81	 31.15	0	84308..84949	+	213	89255530	-	FTL_0090	-	hypothetical protein
82	 34.05	0	85149..85565	+	138	89255531	-	FTL_0091	-	O-methyltransferase
83	 35.49	0	85682..86842	-	386	89255532	purT	FTL_0092	-	phosphoribosylglycinamide formyltransferase 2
84	 36.11	+1	86896..89088	-	730	89255533	-	FTL_0093	-	chitinase
85	 35.85	0	89339..91918	-	859	89255534	-	FTL_0094	-	ClpB protein
86	 29.66	0	92864..93217	+	117	89255535	-	FTL_0097	-	hypothetical protein
87	 35.43	0	93272..94081	-	269	89255536	trpA	FTL_0098	-	tryptophan synthase subunit alpha
88	 39.46	+2	94081..95271	-	396	89255537	-	FTL_0099	-	tryptophan synthase subunit beta
89	 31.14	0	95358..96863	-	501	89255538	-	FTL_0100	-	carboxypeptidase,fragment
90	 36.24	+1	96799..97863	-	354	89255539	-	FTL_0101	-	voltage-gated ClC-type chloride channel clcA
91	 33.33	0	97893..98216	-	107	89255540	-	FTL_0102	-	hypothetical protein
92	 29.47	0	98400..98684	-	94	89255541	-	FTL_0103	-	hypothetical protein
93	 32.85	0	98687..99097	-	136	89255542	-	FTL_0104	-	hypothetical protein
94	 31.55	0	99118..99510	-	130	89255543	-	FTL_0105	-	hypothetical protein
95	 31.44	0	100311..101191	+	293	89255544	isftu1	FTL_0107	-	transposase
96	 29.67	0	101192..102064	-	290	89255545	-	FTL_0108	-	hypothetical protein
97	 30.10	0	102157..102558	+	133	89255546	-	FTL_0109	-	hypothetical protein
98	 29.90	0	102568..102771	+	67	89255547	-	FTL_0110	-	hypothetical protein
99	 32.25	0	102852..103406	+	184	89255548	-	FTL_0111	-	intracellular growth locus, subunit A
100	 31.03	0	103420..104940	+	506	89255549	-	FTL_0112	-	intracellular growth locus, subunit B
32.49	MEAN

3.39	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.