IslandPath Analysis: Kineococcus radiotolerans SRS30216



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 74.20   STD DEV: 3.88
Kineococcus radiotolerans SRS30216, complete genome - 1..4761183
4480 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.53	-1	66..1622	+	518	152963973	-	Krad_0001	-	chromosomal replication initiator protein DnaA
2	 73.87	0	2432..3583	+	383	152963974	-	Krad_0002	-	DNA polymerase III, beta subunit
3	 69.95	-1	3642..4556	+	304	152963975	-	Krad_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 75.68	0	4564..5739	+	391	152963976	-	Krad_0004	-	DNA replication and repair protein RecF
5	 80.89	+1	5705..6358	+	217	152963977	-	Krad_0005	-	hypothetical protein
6	 69.53	-1	6642..8702	+	686	152963978	-	Krad_0006	-	DNA gyrase, B subunit
7	 70.80	0	8767..11499	+	910	152963979	-	Krad_0007	-	DNA gyrase subunit A
8	 73.26	0	11496..12011	+	171	152963980	-	Krad_0008	-	hypothetical protein
9	 75.48	0	12217..12636	+	139	152963981	-	Krad_0009	-	glyoxalase/bleomycin resistance protein/dioxygenase
10	 75.55	0	12677..13678	+	333	152963982	-	Krad_0010	-	ATPase central domain-containing protein
11	 78.86	+1	13675..14289	+	204	152963983	-	Krad_0011	-	protein tyrosine phosphatase
12	 73.71	0	14331..15722	-	463	152963984	-	Krad_0012	-	non-specific protein-tyrosine kinase
13	 75.09	0	15901..17301	+	466	152963985	-	Krad_0013	-	undecaprenyl-phosphate galactose phosphotransferase
14	 79.51	+1	17298..18434	+	378	152963986	-	Krad_0014	-	glycosyl transferase, group 1
15	 77.18	0	18451..19905	-	484	152963987	-	Krad_0015	-	virulence factor MVIN family protein
16	 78.22	+1	19905..21047	-	380	152963988	-	Krad_0016	-	glycosyl transferase group 1
17	 78.75	+1	21044..22144	-	366	152963989	-	Krad_0017	-	glycosyl transferase group 1
18	 74.33	0	22132..23514	-	460	152963990	-	Krad_0018	-	O-antigen polymerase
19	 78.35	+1	23511..24623	-	370	152963991	-	Krad_0019	-	glycosyl transferase group 1
20	 70.37	0	24762..24923	+	53	152963992	-	Krad_0020	-	hypothetical protein
21	 75.99	0	25070..26206	-	378	152963993	-	Krad_0021	-	mucin-associated surface protein (MASP)
22	 67.98	-1	26280..26813	+	177	152963994	-	Krad_0022	-	peptidylprolyl isomerase
23	 74.55	0	26866..27702	+	278	152963995	-	Krad_0023	-	rhomboid family protein
24	 76.41	0	27929..28852	-	307	152963996	-	Krad_0024	-	hypothetical protein
25	 73.57	0	28951..29283	-	110	152963997	-	Krad_0025	-	hypothetical protein
26	 76.93	0	29386..30135	+	249	152963998	-	Krad_0026	-	hypothetical protein
27	 75.45	0	30132..30848	+	238	152963999	-	Krad_0027	-	sortase family protein
28	 72.22	0	30858..31019	+	53	152964000	-	Krad_0028	-	hypothetical protein
29	 75.12	0	31065..31490	+	141	152964001	-	Krad_0029	-	hypothetical protein
30	 75.02	0	31587..33107	+	506	152964002	-	Krad_0030	-	cell envelope-related transcriptional attenuator
31	 77.29	0	33148..34173	-	341	152964003	-	Krad_0031	-	oxidoreductase domain-containing protein
32	 79.39	+1	34276..35265	+	329	152964004	-	Krad_0032	-	alanine racemase
33	 75.94	0	35270..35668	+	132	152964005	-	Krad_0033	-	hypothetical protein
34	 77.30	0	35739..36866	+	375	152964006	-	Krad_0034	-	hypothetical protein
35	 75.95	0	36963..37673	+	236	152964007	-	Krad_0035	-	putative integral membrane protein
36	 77.30	0	37698..38882	-	394	152964008	-	Krad_0036	-	diguanylate cyclase
37	 68.58	-1	39268..39633	-	121	152964009	-	Krad_0037	-	hypothetical protein
38	 73.18	0	39650..40417	-	255	152964010	-	Krad_0038	-	hypothetical protein
39	 71.88	0	40726..41646	+	306	152964011	-	Krad_0039	-	LGFP repeat-containing protein
40	 73.92	0	42103..42474	-	123	152964012	-	Krad_0041	-	putative monovalent cation/H+ antiporter subunit G
41	 73.12	0	42471..42749	-	92	152964013	-	Krad_0042	-	multiple resistance and pH regulation protein F
42	 72.97	0	42746..43348	-	200	152964014	-	Krad_0043	-	multisubunit Na+/H+ antiporter MnhE subunit-like protein
43	 71.74	0	43345..44922	-	525	152964015	-	Krad_0044	-	NADH dehydrogenase (quinone)
44	 71.23	0	44919..45356	-	145	152964016	-	Krad_0045	-	NADH-ubiquinone oxidoreductase chain 4L
45	 74.38	0	45353..48166	-	937	152964017	-	Krad_0046	-	putative monovalent cation/H+ antiporter subunit A
46	 75.43	0	48262..48672	+	136	152964018	-	Krad_0047	-	DNA binding domain-containing protein
47	 75.34	0	48669..49475	+	268	152964019	-	Krad_0048	-	Excalibur domain-containing protein
48	 74.44	0	49503..51122	-	539	152964020	-	Krad_0049	-	methyl-accepting chemotaxis sensory transducer
49	 80.81	+1	51242..51934	-	230	152964021	-	Krad_0050	-	metal dependent phosphohydrolase
50	 74.61	0	52012..52590	-	192	152964022	-	Krad_0051	-	TetR family transcriptional regulator
51	 78.34	+1	52614..53555	+	313	152964023	-	Krad_0052	-	hypothetical protein
52	 74.41	0	53567..54199	+	210	152964024	-	Krad_0053	-	hypothetical protein
53	 78.95	+1	54285..55082	+	265	152964025	-	Krad_0054	-	hypothetical protein
54	 81.59	+1	55079..55681	+	200	152964026	-	Krad_0055	-	hypothetical protein
55	 73.58	0	55678..55923	+	81	152964027	-	Krad_0056	-	hypothetical protein
56	 72.22	0	55945..58338	-	797	152964028	-	Krad_0057	-	ABC transporter-related protein
57	 80.48	+1	58414..59376	-	320	152964029	-	Krad_0058	-	asparaginase/glutaminase
58	 74.53	0	59570..60625	+	351	152964030	-	Krad_0059	-	LGFP repeat-containing protein
59	 71.88	0	60681..61562	-	293	152964031	-	Krad_0060	-	short-chain dehydrogenase/reductase SDR
60	 79.41	+1	61613..62554	-	313	152964032	-	Krad_0061	-	threonine dehydratase
61	 74.31	0	62742..63029	+	95	152964033	-	Krad_0062	-	hypothetical protein
62	 76.79	0	63122..63901	+	259	152964034	-	Krad_0063	-	SpoOM family protein
63	 76.71	0	63935..64651	-	238	152964035	-	Krad_0064	-	response regulator receiver
64	 77.11	0	64648..66237	-	529	152964036	-	Krad_0065	-	signal transduction histidine kinase regulating citrate/malate metabolism
65	 74.18	0	66370..67407	+	345	152964037	-	Krad_0066	-	hypothetical protein
66	 75.84	0	67404..67970	+	188	152964038	-	Krad_0067	-	integral membrane protein
67	 73.67	0	67963..69519	+	518	152964039	-	Krad_0068	-	hypothetical protein
68	 74.94	0	69516..69914	+	132	152964040	-	Krad_0069	-	UspA domain-containing protein
69	 79.17	+1	70118..70909	+	263	152964041	-	Krad_0070	-	hypothetical protein
70	 76.85	0	70952..71776	-	274	152964042	-	Krad_0071	-	metallophosphoesterase
71	 75.58	0	71773..73758	-	661	152964043	-	Krad_0072	-	protein kinase
72	 72.77	0	73822..75279	-	485	152964044	-	Krad_0073	-	peptidoglycan glycosyltransferase
73	 72.34	0	75276..76649	-	457	152964045	-	Krad_0074	-	cell cycle protein
74	 76.80	0	76649..78040	-	463	152964046	-	Krad_0075	-	protein phosphatase 2C-like protein
75	 75.25	0	78044..78544	-	166	152964047	-	Krad_0076	-	FHA domain-containing protein
76	 74.18	0	78582..79286	-	234	152964048	-	Krad_0077	-	FHA domain-containing protein
77	 74.82	0	79585..80724	-	379	152964049	-	Krad_0078	-	arabinan endo-1,5-alpha-L-arabinosidase
78	 80.14	+1	80913..81632	+	239	152964050	-	Krad_0079	-	ThiJ/PfpI domain-containing protein
79	 72.97	0	81659..82150	-	163	152964051	-	Krad_0080	-	ECF subfamily RNA polymerase sigma-24 factor
80	 79.06	+1	82218..83048	-	276	152964052	-	Krad_0081	-	hypothetical protein
81	 74.77	0	83210..83641	+	143	152964053	-	Krad_0082	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
82	 78.32	+1	83651..84268	+	205	152964054	-	Krad_0083	-	hypothetical protein
83	 74.79	0	84338..85051	-	237	152964055	-	Krad_0084	-	endoribonuclease L-PSP
84	 72.75	0	85048..86658	-	536	152964056	-	Krad_0085	-	L-amino-acid oxidase
85	 77.02	0	86852..87682	+	276	152964057	-	Krad_0086	-	NmrA family protein
86	 78.82	+1	87755..89425	+	556	152964058	-	Krad_0087	-	hypothetical protein
87	 77.25	0	89508..91718	+	736	152964059	-	Krad_0088	-	diguanylate cyclase/phosphodiesterase
88	 75.66	0	91783..92049	+	88	152964060	-	Krad_0089	-	hypothetical protein
89	 71.71	0	92046..92501	-	151	152964061	-	Krad_0090	-	large conductance mechanosensitive channel protein
90	 76.68	0	92531..93679	+	382	152964062	-	Krad_0091	-	lycopene beta and epsilon cyclase
91	 70.79	0	93669..94298	-	209	152964063	-	Krad_0092	-	YceI family protein
92	 78.10	+1	94379..95095	-	238	152964064	-	Krad_0093	-	glycerone kinase
93	 76.43	0	95131..95673	+	180	152964065	-	Krad_0094	-	GCN5-related N-acetyltransferase
94	 78.19	+1	95780..96022	+	80	152964066	-	Krad_0095	-	hypothetical protein
95	 72.55	0	96074..97876	+	600	152964067	-	Krad_0096	-	glycoside hydrolase 15-related
96	 75.43	0	97898..98365	-	155	152964068	-	Krad_0097	-	putative anti-sigma regulatory factor, serine/threonine protein kinase
97	 77.60	0	98506..101103	+	865	152964069	-	Krad_0098	-	putative PAS/PAC sensor protein
98	 77.81	0	101264..102268	+	334	152964070	-	Krad_0099	-	diguanylate cyclase
99	 78.03	0	102344..102871	+	175	152964071	-	Krad_0100	-	ECF subfamily RNA polymerase sigma-24 factor
100	 79.17	+1	102868..103563	+	231	152964072	-	Krad_0101	-	hypothetical protein
74.20	MEAN

3.88	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.