IslandPath Analysis: Neisseria meningitidis MC58



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.38   STD DEV: 7.55
Neisseria meningitidis MC58, complete genome - 1..2272360
2063 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.58	0	7..498	-	163	15675949	-	NMB0001	-	putative acetyltransferase
2	 49.24	0	502..897	-	131	15675950	-	NMB0002	-	hypothetical protein
3	 53.91	0	918..2312	-	464	15675951	gltX	NMB0003	-	glutamyl-tRNA synthetase
4	 54.88	0	2517..3161	-	214	15675952	-	NMB0004	-	EpiH/GdmH-related protein
5	 51.69	0	3158..3511	-	117	15675953	arsC	NMB0005	-	arsenate reductase
6	 53.83	0	3635..4117	+	160	15675954	-	NMB0006	-	thioredoxin-related protein
7	 55.45	0	4311..4961	+	216	15675955	ftsE	NMB0007	-	ABC transporter ATP-binding protein
8	 56.21	0	4958..5875	+	305	15675956	-	NMB0008	-	putative cell division protein FtsX
9	 51.41	0	5966..6214	+	82	15675957	-	NMB0009	-	BolA/YrbA family protein
10	 58.17	0	6281..7492	-	403	15675958	pgk	NMB0010	-	phosphoglycerate kinase
11	 58.77	0	7573..8826	-	417	15675959	murA	NMB0011	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
12	 50.10	0	9346..10317	-	323	15675960	-	NMB0012	-	hypothetical protein
13	 53.56	0	10350..10799	-	149	15675961	-	NMB0013	-	hypothetical protein
14	 59.67	+1	10840..12111	-	423	15675962	kdtA	NMB0014	-	3-deoxy-D-manno-octulosonic-acid transferase
15	 53.83	0	12174..13622	-	482	15675963	gnd	NMB0015	-	6-phosphogluconate dehydrogenase
16	 42.62	-1	13918..14154	+	78	15675964	-	NMB0016	-	hypothetical protein
17	 53.90	0	15221..16144	-	307	15675965	lpxC	NMB0017	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
18	 52.24	0	17229..17741	-	170	15675966	pilE	NMB0018	-	pilin PilE
19	 52.55	0	18517..18927	-	136	77358699	-	NMB0019	-	pilS cassette
20	 53.33	0	19267..19641	-	124	77358700	-	NMB0020	-	pilS cassette
21	 52.53	0	19918..20292	-	124	77358701	-	NMB0021	-	pilS cassette
22	 51.62	0	20832..21170	-	112	77358702	-	NMB0022	-	pilS cassette
23	 52.45	0	21470..21877	-	135	77358703	-	NMB0023	-	pilS cassette
24	 50.08	0	21891..22487	-	198	77358704	-	NMB0024	-	pilS cassette
25	 53.24	0	22825..23502	-	225	77358705	-	NMB0025	-	large pilS cassette
26	 57.18	0	23528..23875	-	115	15677981	-	NMB0026	-	pilS cassette
27	 55.45	0	23904..24233	-	109	15675967	-	NMB0027	-	peptidyl-prolyl cis-trans isomerase
28	 46.58	0	24311..24529	-	72	15675968	-	NMB0028	-	hypothetical protein
29	 53.04	0	24651..25604	+	317	15675969	hprA	NMB0029	-	glycerate dehydrogenase
30	 54.28	0	25679..27736	-	685	15675970	metG	NMB0030	-	methionyl-tRNA synthetase
31	 57.37	0	27852..29690	-	612	15675971	glmS	NMB0031	-	D-fructose-6-phosphate amidotransferase
32	 49.62	0	29966..30493	+	175	15675972	-	NMB0032	-	hypothetical protein
33	 59.05	+1	30911..32236	-	441	15675973	-	NMB0033	-	putative membrane-bound lytic murein transglycosylase A
34	 55.60	0	32447..33286	+	279	15675974	-	NMB0034	-	hypothetical protein
35	 53.73	0	33283..34449	+	388	15675975	-	NMB0035	-	hypothetical protein
36	 58.69	0	34713..35978	+	421	15675976	-	NMB0036	-	hypothetical protein
37	 52.42	0	36050..36379	-	109	15675977	phnA	NMB0037	-	phnA protein
38	 57.33	0	36454..37824	-	456	15675978	glmU	NMB0038	-	UDP-N-acetylglucosamine pyrophosphorylase
39	 53.11	0	37879..38151	-	90	15675979	-	NMB0039	-	hypothetical protein
40	 55.60	0	38144..38857	-	237	15675980	-	NMB0040	-	putative hydrolase
41	 59.58	+1	38916..39917	+	333	15675981	-	NMB0041	-	ABC transporter, periplasmic solute-binding protein
42	 53.36	0	40011..40859	+	282	15675982	-	NMB0042	-	hypothetical protein
43	 61.11	+1	40885..41370	+	161	15675983	-	NMB0043	-	hypothetical protein
44	 54.75	0	41472..43040	-	522	15675984	pilB	NMB0044	-	trifunctional thioredoxin/methionine sulfoxide reductase A/B protein
45	 55.85	0	43186..44451	+	421	15675985	pilA	NMB0045	-	signal recognition particle protein
46	 51.56	0	44458..44682	+	74	15675986	-	NMB0046	-	hypothetical protein
47	 39.30	-1	45079..45363	+	94	15675987	-	NMB0047	-	hypothetical protein
48	 60.44	+1	53030..55180	-	716	15675988	-	NMB0050	-	hypothetical protein
49	 55.91	0	55466..56692	-	408	15675989	-	NMB0051	-	twitching motility protein
50	 56.80	0	56855..57898	-	347	15675990	pilT-1	NMB0052	-	twitching motility protein PilT
51	 56.91	0	58018..58704	+	228	15675991	-	NMB0053	-	hypothetical protein
52	 53.19	0	58704..59111	+	135	15675992	-	NMB0054	-	hypothetical protein
53	 53.54	0	59160..59951	+	263	15675993	proC	NMB0055	-	pyrroline-5-carboxylate reductase
54	 49.88	0	60098..60514	+	138	15675994	dksA	NMB0056	-	DnaK suppressor protein
55	 54.06	0	66354..66710	+	118	15675995	-	NMB0057	-	hypothetical protein
56	 42.14	-1	66739..66897	+	52	15675996	-	NMB0058	-	hypothetical protein
57	 53.21	0	66979..68100	+	373	15675997	dnaJ	NMB0059	-	dnaJ protein
58	 54.53	0	68296..70314	+	672	15675998	-	NMB0060	-	hypothetical protein
59	 53.06	0	70969..71835	-	288	15675999	rfbA-1	NMB0062	-	glucose-1-phosphate thymidylyltransferase
60	 53.46	0	71898..72965	-	355	15676000	rfbB-1	NMB0063	-	dTDP-D-glucose 4,6-dehydratase
61	 50.88	0	73081..74100	-	339	15676001	galE	NMB0064	-	UDP-glucose 4-epimerase
62	 34.63	-2	74483..75409	+	308	15676002	-	NMB0065	-	hypothetical protein
63	 25.71	-2	75694..76428	+	244	15676003	ermC	NMB0066	-	rRNA adenine N-6-methyltransferase
64	 29.06	-2	76613..77290	-	225	15677983	-	NMB0067	-	polysialic acid capsule biosynthesis protein SiaD
65	 40.76	-1	77374..78423	-	349	15676004	siaC	NMB0068	-	polysialic acid capsule biosynthesis protein SiaC
66	 40.17	-1	78424..79110	-	228	15676005	siaB	NMB0069	-	polysialic acid capsule biosynthesis protein SiaB
67	 38.01	-1	79114..80247	-	377	15676006	synX	NMB0070	-	polysialic acid capsule biosynthesis protein SynX
68	 46.68	0	80382..81557	+	391	15676007	ctrA	NMB0071	-	capsule polysaccharide export outer membrane protein
69	 46.99	0	81572..82735	+	387	15676008	ctrB	NMB0072	-	capsule polysaccharide export inner-membrane protein
70	 42.98	-1	82735..83532	+	265	15676009	ctrC	NMB0073	-	capsule polysaccharide export inner-membrane protein
71	 47.16	0	83529..84179	+	216	15676010	ctrD	NMB0074	-	capsule polysaccharide export ATP-binding protein CtrD
72	 59.45	+1	84243..86516	+	757	15676011	-	NMB0075	-	putative transcriptional accessory protein Tex
73	 36.75	-1	87536..87886	+	116	15677984	-	NMB0077	-	site-specific DNA methylase, truncation
74	 51.75	0	87929..88585	+	218	15677985	-	NMB0078	-	UDP-glucose 4-epimerase, truncation
75	 53.46	0	88701..89768	+	355	15676012	rfbB-2	NMB0079	-	dTDP-D-glucose 4,6-dehydratase
76	 53.06	0	89831..90697	+	288	15676013	rfbA-2	NMB0080	-	glucose-1-phosphate thymidylyltransferase
77	 50.81	0	90736..91290	+	184	15676014	-	NMB0081	-	dTDP-4-keto-6-deoxy-D-glucose-3,6-epimerase
78	 51.82	0	91315..93429	+	704	15676015	lipA	NMB0082	-	capsule polysaccharide modification protein
79	 48.97	0	93566..94825	+	419	15676016	lipB	NMB0083	-	capsule polysaccharide modification protein
80	 53.33	0	96815..98029	+	404	15676017	gltS	NMB0085	-	sodium/glutamate symport carrier protein
81	 58.01	0	98128..99144	+	338	15676018	-	NMB0086	-	hypothetical protein
82	 51.52	0	99155..99352	+	65	15676019	-	NMB0087	-	hypothetical protein
83	 56.67	0	99777..101177	-	466	15676020	-	NMB0088	-	putative outer membrane protein P1
84	 60.01	+1	101492..102964	-	490	15676021	pykA	NMB0089	-	pyruvate kinase
85	 38.40	-1	104406..104642	+	78	15676022	-	NMB0091	-	hypothetical protein
86	 33.77	-2	104636..104863	+	75	15676023	-	NMB0092	-	hypothetical protein
87	 26.44	-2	104863..104949	+	28	15676024	-	NMB0093	-	hypothetical protein
88	 22.75	-2	105235..105423	+	62	15676025	-	NMB0094	-	hypothetical protein
89	 46.41	0	105430..105582	+	50	15676026	-	NMB0095	-	hypothetical protein
90	 24.56	-2	105683..105853	+	56	15676027	-	NMB0096	-	hypothetical protein
91	 38.19	-1	109488..109631	-	47	15676028	-	NMB0099	-	hypothetical protein
92	 34.69	-2	109631..109777	-	48	15676029	-	NMB0100	-	hypothetical protein
93	 60.31	+1	110615..111133	+	172	15676030	-	NMB0102	-	hypothetical protein
94	 38.59	-1	111409..111903	-	164	15676031	-	NMB0103	-	putative bacteriocin resistance protein
95	 39.70	-1	112406..113080	-	224	15676032	-	NMB0104	-	hypothetical protein
96	 57.53	0	113362..114204	-	280	15676033	-	NMB0105	-	PhnO-related protein
97	 56.57	0	114443..115363	+	306	15676034	pyrB	NMB0106	-	aspartate carbamoyltransferase catalytic subunit
98	 56.21	0	115373..115831	+	152	15676035	pyrI	NMB0107	-	aspartate carbamoyltransferase regulatory subunit
99	 53.30	0	115896..116561	+	221	15676036	-	NMB0108	-	hypothetical protein
100	 55.33	0	116624..117955	-	443	15676037	-	NMB0109	-	hypothetical protein
51.38	MEAN

7.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.