IslandPath Analysis: Sphingopyxis alaskensis RB2256



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 65.57   STD DEV: 3.76
Sphingopyxis alaskensis RB2256, complete genome - 1..3345170
3165 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 67.99	0	173..1534	+	453	103485499	-	Sala_0001	-	chromosomal replication initiator protein DnaA
2	 66.52	0	1682..2353	-	223	103485500	-	Sala_0002	-	glutathione S-transferase-like protein
3	 65.00	0	2549..3208	-	219	103485501	-	Sala_0003	-	GTPase EngB
4	 64.27	0	3205..4959	-	584	103485502	-	Sala_0004	-	putative inner membrane protein translocase component YidC
5	 68.54	0	5006..5218	-	70	103485503	-	Sala_0005	-	hypothetical protein
6	 68.05	0	5439..6161	-	240	103485504	-	Sala_0006	-	ribonuclease P protein component
7	 58.56	-1	6361..6693	+	110	103485505	-	Sala_0007	-	entericidin EcnAB
8	 69.50	+1	6735..7511	-	258	103485506	-	Sala_0008	-	hydrolase, alpha/beta fold family protein
9	 60.94	-1	7591..8253	-	220	103485507	-	Sala_0009	-	glutathione S-transferase-like protein
10	 69.09	0	8250..8702	-	150	103485508	-	Sala_0010	-	hypothetical protein
11	 65.08	0	8689..9192	-	167	103485509	-	Sala_0011	-	3-demethylubiquinone-9 3-methyltransferase
12	 66.29	0	9228..10031	-	267	103485510	-	Sala_0012	-	glyoxalase/bleomycin resistance protein/dioxygenase
13	 69.00	0	10071..10370	-	99	103485511	-	Sala_0013	-	hypothetical protein
14	 66.22	0	10373..11044	-	223	103485512	-	Sala_0014	-	glutathione S-transferase-like protein
15	 63.62	0	11093..11815	-	240	103485513	-	Sala_0015	-	hypothetical protein
16	 65.19	0	11849..12523	-	224	103485514	-	Sala_0016	-	glutathione S-transferase-like protein
17	 66.26	0	12546..13529	-	327	103485515	-	Sala_0017	-	alpha/beta hydrolase fold
18	 63.47	0	13559..13777	-	72	103485516	-	Sala_0018	-	hypothetical protein
19	 65.75	0	13851..14285	-	144	103485517	-	Sala_0019	-	glyoxalase/bleomycin resistance protein/dioxygenase
20	 68.29	0	14357..15097	-	246	103485518	-	Sala_0020	-	TetR family transcriptional regulator
21	 71.37	+1	15206..16714	+	502	103485519	-	Sala_0021	-	Mg chelatase-related protein
22	 67.00	0	16724..17023	+	99	103485520	-	Sala_0022	-	hypothetical protein
23	 69.80	+1	17078..18832	+	584	103485521	-	Sala_0023	-	diguanylate cyclase
24	 65.91	0	18852..19247	-	131	103485522	-	Sala_0024	-	hypothetical protein
25	 67.41	0	19249..20457	-	402	103485523	-	Sala_0025	-	peptidase M23B
26	 66.67	0	20688..22094	+	468	103485524	-	Sala_0026	-	isoprenylcysteine carboxyl methyltransferase
27	 65.03	0	22212..24476	-	754	103485525	-	Sala_0027	-	TonB-dependent receptor
28	 66.39	0	24779..25867	-	362	103485526	-	Sala_0028	-	PepSY-associated TM helix
29	 67.13	0	25868..28018	-	716	103485527	-	Sala_0029	-	TonB-dependent receptor
30	 68.53	0	28222..30534	+	770	103485528	-	Sala_0030	-	patatin
31	 67.81	0	30847..31545	-	232	103485529	-	Sala_0031	-	ThiJ/PfpI
32	 69.70	+1	31966..32262	-	98	103485530	-	Sala_0032	-	entericidin EcnAB
33	 72.33	+1	32447..32764	-	105	103485531	-	Sala_0033	-	outer membrane protein
34	 66.46	0	32993..33979	+	328	103485532	-	Sala_0034	-	ArsR family transcriptional regulator
35	 67.09	0	33976..34914	+	312	103485533	-	Sala_0035	-	5,10-methylenetetrahydrofolate reductase
36	 64.70	0	34911..35978	+	355	103485534	-	Sala_0036	-	5-methyltetrahydrofolate--homocysteine S-methyltransferase
37	 62.47	0	36101..38722	+	873	103485535	-	Sala_0037	-	5-methyltetrahydrofolate--homocysteine methyltransferase
38	 66.88	0	38833..39786	+	317	103485536	-	Sala_0038	-	hypothetical protein
39	 64.49	0	39789..40247	-	152	103485537	-	Sala_0039	-	hypothetical protein
40	 66.98	0	40437..40757	-	106	103485538	-	Sala_0040	-	hypothetical protein
41	 62.68	0	40793..41344	-	183	103485539	-	Sala_0041	-	TspO and MBR like proteins
42	 67.21	0	41406..42146	-	246	103485540	-	Sala_0042	-	hemolysin A
43	 69.38	+1	42262..44322	-	686	103485541	-	Sala_0043	-	thiol:disulfide interchange protein
44	 68.86	0	44414..46099	+	561	103485542	-	Sala_0044	-	type I phosphodiesterase/nucleotide pyrophosphatase
45	 69.57	+1	46087..46947	+	286	103485543	-	Sala_0045	-	pyrroline-5-carboxylate reductase
46	 68.09	0	46964..47527	-	187	103485544	-	Sala_0046	-	MarR family transcriptional regulator
47	 66.21	0	47553..48638	+	361	103485545	-	Sala_0047	-	branched-chain amino acid aminotransferase
48	 57.38	-2	48884..50962	+	692	103485546	-	Sala_0048	-	phage integrase
49	 63.78	0	51177..54644	-	1155	103485547	-	Sala_0049	-	hypothetical protein
50	 62.11	0	54644..55894	-	416	103485548	-	Sala_0050	-	metallophosphoesterase
51	 64.25	0	55994..57361	-	455	103485549	-	Sala_0051	-	UBA/ThiF-type NAD/FAD binding fold containing protein
52	 64.38	0	57375..57854	-	159	103485550	-	Sala_0052	-	hypothetical protein
53	 63.40	0	57838..58296	-	152	103485551	-	Sala_0053	-	hypothetical protein
54	 63.42	0	58298..58759	-	153	103485552	-	Sala_0054	-	hypothetical protein
55	 64.21	0	58843..62181	-	1112	103485553	-	Sala_0055	-	UvrD/REP helicase
56	 60.68	-1	62186..62770	-	194	103485554	-	Sala_0056	-	hypothetical protein
57	 61.20	-1	62767..63480	-	237	103485555	-	Sala_0057	-	ECF subfamily RNA polymerase sigma-24 factor
58	 54.11	-2	63977..64852	+	291	103485556	-	Sala_0058	-	hypothetical protein
59	 65.23	0	65272..67644	+	790	103485557	-	Sala_0059	-	hypothetical protein
60	 60.91	-1	68024..69100	+	358	103485558	-	Sala_0060	-	amidohydrolase 2
61	 63.65	0	69196..69759	+	187	103485559	-	Sala_0061	-	hypothetical protein
62	 61.94	0	69756..70496	+	246	103485560	-	Sala_0062	-	hypothetical protein
63	 60.12	-1	70663..71181	+	172	103485561	-	Sala_0063	-	hypothetical protein
64	 63.22	0	71489..72214	+	241	103485562	-	Sala_0064	-	hypothetical protein
65	 63.82	0	72355..72810	+	151	103485563	-	Sala_0065	-	17 kDa surface antigen
66	 59.30	-1	72897..73181	-	94	103485564	-	Sala_0066	-	hypothetical protein
67	 66.83	0	73686..74876	-	396	103485565	-	Sala_0067	-	putative transposase
68	 66.01	0	74882..75790	-	302	103485566	-	Sala_0068	-	phage integrase
69	 62.54	0	75977..76849	-	290	103485567	-	Sala_0069	-	hypothetical protein
70	 59.68	-1	76846..77403	-	185	103485568	-	Sala_0070	-	hypothetical protein
71	 60.71	-1	77512..78048	+	178	103485569	-	Sala_0071	-	hypothetical protein
72	 63.70	0	78229..79272	-	347	103485570	-	Sala_0072	-	beta-lactamase-like protein
73	 60.87	-1	79659..79934	-	91	103485571	-	Sala_0073	-	hypothetical protein
74	 63.53	0	80291..81436	-	381	103485572	-	Sala_0074	-	thioredoxin-like protein
75	 61.92	0	81527..82579	-	350	103485573	-	Sala_0075	-	twin-arginine translocation pathway signal
76	 65.57	0	82625..83080	-	151	103485574	-	Sala_0076	-	hypothetical protein
77	 59.78	-1	83189..83740	-	183	103485575	-	Sala_0077	-	TetR family transcriptional regulator
78	 63.62	0	83846..84697	+	283	103485576	-	Sala_0078	-	short-chain dehydrogenase/reductase SDR
79	 56.76	-2	84803..85024	-	73	103485577	-	Sala_0079	-	hypothetical protein
80	 61.87	0	85075..85491	-	138	103485578	-	Sala_0080	-	OsmC-like protein
81	 63.85	0	85527..86873	-	448	103485579	-	Sala_0081	-	epoxide hydrolase-like protein
82	 66.17	0	86908..87717	-	269	103485580	-	Sala_0082	-	short-chain dehydrogenase/reductase SDR
83	 64.01	0	87851..88753	-	300	103485581	-	Sala_0083	-	LysR family transcriptional regulator
84	 63.30	0	89025..89618	-	197	103485582	-	Sala_0084	-	TetR family transcriptional regulator
85	 66.95	0	89692..90405	+	237	103485583	-	Sala_0085	-	oxidoreductase
86	 58.33	-1	90499..90834	-	111	103485584	-	Sala_0086	-	hypothetical protein
87	 60.86	-1	90958..91749	-	263	103485585	-	Sala_0087	-	hypothetical protein
88	 62.61	0	91752..92687	-	311	103485586	-	Sala_0088	-	hypothetical protein
89	 60.12	-1	93158..93844	+	228	103485587	-	Sala_0089	-	ribose 5-phosphate isomerase
90	 61.28	-1	94088..94663	+	191	103485588	-	Sala_0090	-	MarR family transcriptional regulator
91	 63.48	0	94707..95270	-	187	103485589	-	Sala_0091	-	TetR family transcriptional regulator
92	 59.39	-1	95423..95848	+	141	103485590	-	Sala_0092	-	hypothetical protein
93	 63.12	0	95841..96686	+	281	103485591	-	Sala_0093	-	NmrA-like protein
94	 63.48	0	96726..97007	+	93	103485592	-	Sala_0094	-	hypothetical protein
95	 60.31	-1	97276..98235	+	319	103485593	-	Sala_0095	-	LysR family transcriptional regulator
96	 61.70	-1	99504..100208	+	234	103485594	-	Sala_0097	-	glutathione S-transferase-like protein
97	 58.20	-1	100205..101173	+	322	103485595	-	Sala_0098	-	Mg2+ transporter protein, CorA-like protein
98	 59.86	-1	101270..101842	+	190	103485596	-	Sala_0099	-	hypothetical protein
99	 55.19	-2	101928..102380	+	150	103485597	-	Sala_0100	-	hypothetical protein
100	 66.04	0	102403..103683	-	426	103485598	-	Sala_0101	-	major facilitator transporter
65.57	MEAN

3.76	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.