IslandPath Analysis: Bifidobacterium longum DJO10A



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.56   STD DEV: 4.30
Bifidobacterium longum DJO10A, complete genome - 1..2375792
1990 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.25	-1	49..288	+	79	189438864	cspC1	BLD_0001	-	Cold shock protein
2	 63.84	0	526..2151	+	541	189438865	groL	BLD_0002	-	Chaperonin HSP60
3	 60.82	0	2248..2538	-	96	189438866	-	BLD_0003	-	hypothetical protein
4	 53.75	-1	2754..3419	+	221	189438867	-	BLD_0004	-	Hypothetical membrane protein
5	 58.06	0	3412..4143	+	243	189438868	-	BLD_0005	-	Response regulator
6	 59.70	0	4258..6165	+	635	189438869	baeS1	BLD_0006	-	Signal transduction histidine kinase
7	 62.05	0	6235..6624	+	129	189438870	cspC2	BLD_0007	-	Cold shock protein
8	 59.60	0	6633..7820	+	395	189438871	-	BLD_0008	-	hypothetical protein
9	 63.46	0	7932..8897	-	321	189438872	uspA1	BLD_0009	-	Universal stress protein
10	 62.95	0	9047..11656	+	869	189438873	clpA1	BLD_0010	-	ATP-binding subunit of Clp protease
11	 57.50	0	11836..13155	-	439	189438874	-	BLD_0011	-	Cytosine deaminase-like protein
12	 57.55	0	13298..14800	+	500	189438875	-	BLD_0012	-	Polyketide synthase expression regulator
13	 60.55	0	15026..16366	+	446	189438876	-	BLD_0013	-	Putative permease
14	 61.13	0	16452..17210	+	252	189438877	-	BLD_0014	-	Amidase-like protein
15	 60.01	0	17535..19157	+	540	189438878	ushA1	BLD_0015	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like esterase
16	 64.82	0	19363..20823	-	486	189438879	-	BLD_0016	-	Hypothetical membrane protein
17	 63.69	0	20980..22323	+	447	189438880	hisS	BLD_0017	-	Histidyl-tRNA synthetase
18	 63.94	0	22359..24158	+	599	189438881	aspS	BLD_0018	-	Aspartyl-tRNA synthetase
19	 51.26	-2	24635..25588	-	317	189438882	-	BLD_0019	-	hypothetical protein
20	 61.35	0	26215..26985	+	256	189438883	hisP1	BLD_0020	-	ABC-type amino acid transport system ATPase component
21	 62.02	0	27017..27856	+	279	189438884	hisJ1	BLD_0021	-	ABC-type amino acid transport system periplasmic component
22	 60.32	0	27856..28533	+	225	189438885	hisM1	BLD_0022	-	ABC-type amino acid transport system permease component
23	 64.67	0	28539..29639	+	366	189438886	hisM2	BLD_0023	-	ABC-type amino acid transport system permease component
24	 62.36	0	29737..31269	+	510	189438887	pgpB1	BLD_0024	-	Membrane-associated phospholipid phosphatase
25	 61.21	0	31490..31837	+	115	189438888	-	BLD_0025	-	Transposase
26	 63.91	0	31880..32641	-	253	189438889	-	BLD_0026	-	DNA replication protein
27	 67.52	+1	32638..33105	-	155	189438890	-	BLD_0027	-	hypothetical protein
28	 66.67	+1	33102..34031	-	309	189438891	-	BLD_0028	-	Transposase
29	 66.28	+1	34248..35024	+	258	189438892	-	BLD_0029	-	Transposase
30	 66.10	+1	35111..36166	-	351	189438893	-	BLD_0030	-	Integrase
31	 68.01	+1	36163..37128	-	321	189438894	-	BLD_0031	-	Integrase
32	 67.66	+1	37125..38327	-	400	189438895	-	BLD_0032	-	Integrase
33	 59.13	0	38534..38785	+	83	189438896	-	BLD_0033	-	Transposase
34	 53.51	-1	38885..39925	-	346	189438897	tetW1	BLD_0034	-	truncated tetracycline resistance protein
35	 52.94	-1	39937..40803	-	288	189438898	tetW2	BLD_0035	-	truncated tetracycline resistance protein
36	 60.21	0	41531..45466	+	1311	189438899	ushA2	BLD_0036	-	5'-nucleotidase/2',3'-cyclic phosphodiesterase-like esterase
37	 62.31	0	45579..45968	+	129	189438900	-	BLD_0037	-	hypothetical protein
38	 50.61	-2	46022..46351	+	109	189438901	-	BLD_0038	-	hypothetical protein
39	 58.47	0	46417..47490	+	357	189438902	-	BLD_0039	-	hypothetical protein
40	 61.60	0	47624..50191	+	855	189438903	-	BLD_0040	-	Superfamily II helicase
41	 61.81	0	50274..51653	+	459	189438904	-	BLD_0041	-	ATPase for Holliday junction resolvase
42	 58.37	0	51712..52434	+	240	189438905	-	BLD_0042	-	Response regulator
43	 57.13	0	52431..54128	+	565	189438906	baeS2	BLD_0043	-	Signal transduction histidine kinase
44	 58.17	0	54125..55855	+	576	189438907	-	BLD_0044	-	hypothetical protein
45	 58.54	0	56171..57154	+	327	189438908	rbsB	BLD_0045	-	ABC-type sugar transport system periplasmic component
46	 57.20	0	57295..58836	+	513	189438909	mglA1	BLD_0046	-	ABC-type sugar transport system ATPase component
47	 57.42	0	58838..59908	+	356	189438910	araH1	BLD_0047	-	ABC-type ribose/xylose/arabinose/galactoside transport systems permease component
48	 58.85	0	59905..60927	+	340	189438911	araH2	BLD_0048	-	ABC-type ribose/xylose/arabinose/galactoside transport systems permease component
49	 58.30	0	61150..62607	-	485	189438912	araJ1	BLD_0049	-	Sugar efflux permease
50	 59.98	0	62906..63892	+	328	189438913	serA1	BLD_0050	-	Phosphoglycerate dehydrogenase
51	 59.05	0	64017..64436	-	139	189438914	-	BLD_0051	-	membrane-anchored glycerophosphoryl diester phosphodiesterase-like protein
52	 64.93	+1	64862..65494	-	210	189438915	-	BLD_0052	-	Hypothetical membrane protein
53	 57.65	0	65604..65969	+	121	189438916	-	BLD_0053	-	Hypothetical membrane protein
54	 59.80	0	66068..66373	-	101	189438917	-	BLD_0054	-	Putative RNA-binding protein
55	 62.72	0	66445..68877	-	810	189438918	-	BLD_0055	-	ATPase component of ABC-type transport systems
56	 60.40	0	69008..69661	-	217	189438919	-	BLD_0056	-	Hypothetical membrane protein
57	 60.26	0	69913..70926	+	337	189438920	-	BLD_0057	-	Putative glycosyltransferase
58	 65.88	+1	70987..72258	+	423	189438921	-	BLD_0058	-	IS30 family transposase
59	 59.54	0	72372..73157	-	261	189438922	nfnB1	BLD_0059	-	Nitroreductase
60	 60.29	0	73403..74170	+	255	189438923	-	BLD_0060	-	Transcriptional regulator
61	 61.14	0	74556..75821	+	421	189438924	-	BLD_0061	-	Aspartate/tyrosine/aromatic aminotransferase
62	 58.52	0	75869..76654	+	261	189438925	cbiO1	BLD_0062	-	ABC-type cobalt transport system ATPase component
63	 58.59	0	76711..78480	-	589	189438926	-	BLD_0063	-	arylsulfate sulfotransferase
64	 61.36	0	78615..80876	-	753	189438927	-	BLD_0064	-	Putative PMT family glycosyltransferase
65	 61.55	0	81043..84597	+	1184	189438928	-	BLD_0065	-	hypothetical protein
66	 63.74	0	84662..87424	+	920	189438929	lig	BLD_0066	-	NAD-dependent DNA ligase
67	 65.05	+1	87601..88716	+	371	189438930	mrp1	BLD_0067	-	ATPase for chromosome partitioning
68	 54.03	-1	88990..89820	-	276	189438931	-	BLD_0068	-	hypothetical protein
69	 64.79	0	90088..90300	-	70	189438932	purR	BLD_0069	-	Transcriptional regulator
70	 60.29	0	90438..91253	+	271	189438933	-	BLD_0070	-	ABC-type sugar transport system permease component
71	 60.44	0	91364..93499	+	711	189438934	chb	BLD_0071	-	N-acetyl-beta-hexosaminidase
72	 58.67	0	93661..93960	+	99	189438935	-	BLD_0072	-	ABC-type sugar transport system periplasmic component
73	 61.41	0	94072..95898	+	608	189438936	-	BLD_0073	-	Alpha-glucosidase
74	 64.10	0	96113..97087	+	324	189438937	fadB1	BLD_0074	-	3-hydroxyacyl-CoA dehydrogenase
75	 61.29	0	97117..97209	+	30	189438938	fadB2	BLD_0075	-	3-hydroxyacyl-CoA dehydrogenase
76	 67.88	+1	97427..97756	+	109	189438939	-	BLD_0076	-	hypothetical protein
77	 63.19	0	97808..98584	+	258	189438940	tam	BLD_0077	-	Trans-aconitate methyltransferase
78	 61.74	0	98918..99364	+	148	189438941	-	BLD_0078	-	ABC-type transport system ATPase component
79	 64.83	0	99423..100130	+	235	189438942	-	BLD_0079	-	hypothetical protein
80	 65.54	+1	100207..101007	-	266	189438943	-	BLD_0080	-	ABC-type transport system permease component
81	 68.37	+1	101004..101765	-	253	189438944	-	BLD_0081	-	SalX-type ABC antimicrobial peptide transport system ATPase component
82	 60.85	0	101897..102463	+	188	189438945	efp	BLD_0082	-	Translation elongation factor P
83	 61.26	0	102518..103090	+	190	189438946	nusB	BLD_0083	-	Transcription termination factor
84	 62.99	0	103281..104504	+	407	189438947	carA	BLD_0084	-	Carbamoylphosphate synthase small subunit
85	 64.30	0	104506..107889	+	1127	189438948	carB	BLD_0085	-	Carbamoylphosphate synthase large subunit
86	 61.97	0	107958..108809	+	283	189438949	pyrF1	BLD_0086	-	Orotidine-5'-phosphate decarboxylase
87	 63.96	0	108989..109579	+	196	189438950	gmk	BLD_0087	-	Guanylate kinase
88	 60.88	0	109581..110288	-	235	189438951	polC	BLD_0088	-	DNA polymerase III alpha subunit
89	 62.19	0	110435..112690	+	751	189438952	fusA3	BLD_0089	-	Translation elongation factor
90	 61.14	0	112699..113349	-	216	189438953	-	BLD_0090	-	Putative esterase
91	 56.21	-1	113577..114236	+	219	189438954	hisM3	BLD_0091	-	ABC-type amino acid transport system permease component
92	 58.22	0	114223..114897	+	224	189438955	hisM4	BLD_0092	-	ABC-type amino acid transport system permease component
93	 59.47	0	114890..115681	+	263	189438956	hisP2	BLD_0093	-	ABC-type amino acid transport system ATPase component
94	 59.91	0	115747..116649	+	300	189438957	hisJ2	BLD_0094	-	ABC-type amino acid transport system periplasmic component
95	 60.07	0	117008..118129	+	373	189438958	metC1	BLD_0095	-	Cystathionine beta-lyases/cystathionine gamma-synthase
96	 60.32	0	118362..118613	+	83	189438959	grxC1	BLD_0096	-	Glutaredoxin
97	 56.70	0	118725..119045	-	106	189438960	-	BLD_0097	-	Putative transcriptional regulator
98	 55.91	-1	119056..119241	+	61	189438961	qor1	BLD_0098	-	NADPH-quinone reductase
99	 48.20	-2	119333..119554	+	73	189438962	abcC1	BLD_0099	-	ABC-type metal ion transport system ATPase component
100	 62.88	0	119720..119983	+	87	189438963	metC2	BLD_0100	-	Cystathionine beta-lyse/cystathionine gamma-synthase
60.56	MEAN

4.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.