IslandPath Analysis: Shewanella amazonensis SB2B



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 53.89   STD DEV: 3.86
Shewanella amazonensis SB2B, complete genome - 1..4306142
3645 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.11	0	70..510	-	146	119773143	-	Sama_0001	-	flavodoxin
2	 50.60	0	657..1571	+	304	119773144	-	Sama_0002	-	hypothetical protein
3	 55.91	0	1522..2367	-	281	119773145	-	Sama_0003	-	carboxylesterase
4	 57.58	0	2377..3510	-	377	119773146	-	Sama_0004	-	alcohol dehydrogenase, zinc-binding
5	 57.73	0	3686..4558	+	290	119773147	-	Sama_0005	-	LysR, substrate-binding
6	 50.10	0	4686..5186	+	166	119773148	-	Sama_0006	-	hypothetical protein
7	 54.74	0	5295..6401	+	368	119773149	-	Sama_0007	-	oxidoreductase, FAD/FMN-binding
8	 57.12	0	6502..7863	-	453	119773150	trmE	Sama_0008	-	tRNA modification GTPase TrmE
9	 54.18	0	7951..9576	-	541	119773151	-	Sama_0009	-	inner membrane protein, 60 kDa
10	 47.06	-1	9581..9835	-	84	119773152	-	Sama_0010	-	hypothetical protein
11	 48.18	-1	9802..10158	-	118	119773153	-	Sama_0011	-	ribonuclease P protein component
12	 57.97	+1	10175..10312	-	45	119773154	rpmH	Sama_0012	-	50S ribosomal protein L34
13	 52.33	0	10775..12148	+	457	119773155	dnaA	Sama_0013	-	chromosomal replication initiation protein
14	 54.13	0	12168..13268	+	366	119773156	-	Sama_0014	-	DNA-directed DNA polymerase
15	 52.45	0	13296..14378	+	360	119773157	-	Sama_0015	-	DNA replication and repair protein RecF
16	 54.30	0	14471..16888	+	805	119773158	-	Sama_0016	-	DNA topoisomerase (ATP-hydrolyzing)
17	 52.99	0	16992..17393	-	133	119773159	-	Sama_0017	-	MutT/nudix family protein
18	 59.63	+1	17393..18046	-	217	119773160	-	Sama_0018	-	pyroglutamyl-peptidase I
19	 55.59	0	18058..19041	-	327	119773161	-	Sama_0019	-	putative transmembrane protein
20	 57.62	0	19038..19778	-	246	119773162	-	Sama_0020	-	hypothetical protein
21	 59.09	+1	19768..20493	-	241	119773163	-	Sama_0021	-	hypothetical protein
22	 58.84	+1	20486..21418	-	310	119773164	-	Sama_0022	-	Urea carboxylase
23	 54.00	0	21420..22082	-	220	119773165	-	Sama_0023	-	hypothetical protein
24	 50.09	0	22337..23392	+	351	119773166	-	Sama_0024	-	putative signal transduction protein
25	 57.78	+1	23457..25526	-	689	119773167	glyS	Sama_0025	-	glycyl-tRNA synthetase subunit beta
26	 55.85	0	25552..26457	-	301	119773168	glyQ	Sama_0026	-	glycyl-tRNA synthetase subunit alpha
27	 50.18	0	26565..27134	+	189	119773169	-	Sama_0027	-	DNA-3-methyladenine glycosylase I
28	 51.61	0	27239..30427	-	1062	119773170	-	Sama_0028	-	amidohydrolase
29	 47.00	-1	30571..30870	-	99	119773171	-	Sama_0029	-	redox protein regulator of disulfide bond formation
30	 50.58	0	31147..33129	+	660	119773172	-	Sama_0030	-	putative methyl-accepting chemotaxis sensory transducer
31	 55.67	0	33194..34357	-	387	119773173	fadA	Sama_0031	-	3-ketoacyl-CoA thiolase
32	 55.42	0	34377..36527	-	716	119773174	fadB	Sama_0032	-	multifunctional fatty acid oxidation complex subunit alpha
33	 52.95	0	36808..38127	+	439	119773175	-	Sama_0033	-	proline dipeptidase
34	 52.66	0	38130..38750	+	206	119773176	-	Sama_0034	-	hypothetical protein
35	 52.95	0	38875..40332	+	485	119773177	-	Sama_0035	-	TrkH family potassium uptake protein
36	 52.25	0	40332..40865	+	177	119773178	-	Sama_0036	-	protoporphyrinogen oxidase
37	 49.19	-1	40878..41186	-	102	119773179	-	Sama_0037	-	ArsR family transcriptional regulator
38	 51.99	0	41376..41927	+	183	119773180	-	Sama_0038	-	protoporphyrinogen oxidase
39	 54.40	0	41933..43375	-	480	119773181	-	Sama_0039	-	potassium uptake protein TrkH
40	 54.33	0	43378..44787	-	469	119773182	trkA	Sama_0040	-	potassium transporter peripheral membrane component
41	 57.55	0	44805..46088	-	427	119773183	-	Sama_0041	-	sun protein
42	 58.15	+1	46088..47050	-	320	119773184	-	Sama_0042	-	methionyl-tRNA formyltransferase
43	 49.21	-1	47066..47569	-	167	119773185	-	Sama_0043	-	peptide deformylase
44	 51.87	0	47757..48797	+	346	119773186	-	Sama_0044	-	LysM domain-containing protein
45	 54.18	0	48882..49898	+	338	119773187	-	Sama_0045	-	DNA processing protein DprA, putative
46	 48.12	-1	49901..50380	+	159	119773188	-	Sama_0046	-	hypothetical protein
47	 49.44	-1	50462..50728	-	88	119773189	-	Sama_0047	-	hypothetical protein
48	 52.48	0	51290..51853	+	187	119773190	-	Sama_0048	-	topoisomerase DNA-binding C4 zinc finger domain-containing protein
49	 50.61	0	51951..52523	+	190	119773191	-	Sama_0049	-	SUA5/YciO/YrdC-like protein
50	 55.52	0	52537..53451	+	304	119773192	-	Sama_0050	-	coproporphyrinogen III oxidase
51	 51.85	0	53477..53908	-	143	119773193	-	Sama_0051	-	globin
52	 52.45	0	54060..54896	+	278	119773194	-	Sama_0052	-	shikimate dehydrogenase
53	 52.33	0	54899..55156	+	85	119773195	-	Sama_0053	-	hypothetical protein
54	 51.91	0	55153..55701	-	182	119773196	-	Sama_0054	-	carbonic anhydrase
55	 53.57	0	61309..61560	+	83	119773197	-	Sama_0055	-	hypothetical protein
56	 51.54	0	61576..62031	+	151	119773198	-	Sama_0056	-	Rrf2 family protein
57	 50.73	0	62006..62758	-	250	119773199	-	Sama_0057	-	protein of unknown function DUF610, YibQ
58	 51.04	0	62780..63976	-	398	119773200	-	Sama_0058	-	C-terminal processing peptidase
59	 52.95	0	64007..65143	-	378	119773201	-	Sama_0059	-	M24/M37 family peptidase
60	 55.19	0	65149..66690	-	513	119773202	-	Sama_0060	-	phosphoglyceromutase
61	 49.62	-1	66964..67356	+	130	119773203	-	Sama_0061	-	rhodanese-like protein
62	 52.29	0	67576..68055	+	159	119773204	-	Sama_0062	-	preprotein translocase subunit SecB
63	 56.96	0	68062..69081	+	339	119773205	gpsA	Sama_0063	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
64	 54.36	0	69152..70345	+	397	119773206	-	Sama_0064	-	hypothetical protein
65	 54.36	0	70912..71829	+	305	119773207	-	Sama_0065	-	response regulator receiver protein
66	 51.31	0	71844..72794	+	316	119773208	-	Sama_0066	-	ABC-type nitrate/sulfonate/bicarbonate transport system protein
67	 51.60	0	72794..75859	+	1021	119773209	-	Sama_0067	-	signal transduction histidine kinase-like protein protein
68	 54.80	0	75976..76506	+	176	119773210	mogA	Sama_0068	-	molybdenum cofactor biosynthesis protein
69	 57.05	0	76553..76999	+	148	119773211	-	Sama_0069	-	NLP/P60 family lipoprotein
70	 56.12	0	77043..77630	-	195	119773212	-	Sama_0070	-	hypothetical protein
71	 54.17	0	77654..77893	-	79	119773213	-	Sama_0071	-	hypothetical protein
72	 53.51	0	77895..78806	-	303	119773214	pbpG	Sama_0072	-	D-alanyl-D-alanine endopeptidase
73	 52.41	0	78895..79329	-	144	119773215	-	Sama_0073	-	4-hydroxybenzoyl-CoA thioesterase
74	 52.42	0	79435..80115	-	226	119773216	-	Sama_0074	-	HAD-superfamily hydrolase, subfamily IA, variant 1 family protein
75	 56.94	0	80333..81535	+	400	119773217	-	Sama_0075	-	hypothetical protein
76	 56.52	0	81833..82699	+	288	119773218	-	Sama_0076	-	transcription activator, effector binding
77	 57.57	0	82839..84014	-	391	119773219	-	Sama_0077	-	MerR family transcriptional regulator
78	 50.05	0	84659..86656	+	665	119773220	-	Sama_0078	-	prolyl oligopeptidase family protein
79	 54.46	0	86728..87702	-	324	119773221	-	Sama_0079	-	putative esterase
80	 59.81	+1	87909..89147	-	412	119773222	-	Sama_0080	-	imidazolonepropionase
81	 56.17	0	89362..90066	+	234	119773223	-	Sama_0081	-	histidine utilization repressor
82	 56.15	0	90316..92769	+	817	119773224	-	Sama_0082	-	GGDEF domain-containing protein
83	 57.23	0	92823..93776	-	317	119773225	-	Sama_0083	-	alpha/beta hydrolase fold
84	 57.42	0	93820..95679	-	619	119773226	-	Sama_0084	-	hypothetical protein
85	 56.56	0	95910..96908	+	332	119773227	-	Sama_0085	-	adenosine deaminase
86	 52.72	0	96995..98335	-	446	119773228	-	Sama_0086	-	coproporphyrinogen III oxidase
87	 55.97	0	98474..99745	+	423	119773229	-	Sama_0087	-	amidohydrolase
88	 51.92	0	99802..100269	-	155	119773230	-	Sama_0088	-	hypothetical protein
89	 55.31	0	100286..100822	-	178	119773231	-	Sama_0089	-	hypothetical protein
90	 50.81	0	100859..101539	-	226	119773232	-	Sama_0090	-	hypothetical protein
91	 54.27	0	102313..102933	-	206	119773233	-	Sama_0091	-	cytochrome c, class I
92	 51.83	0	103103..103756	+	217	119773234	-	Sama_0092	-	GTPase EngB
93	 54.91	0	104678..107449	-	923	119773235	-	Sama_0093	-	DNA-directed DNA polymerase
94	 53.36	0	107836..108489	+	217	119773236	-	Sama_0094	-	isoprenoid biosynthesis protein
95	 53.91	0	108523..109353	-	276	119773237	-	Sama_0095	-	glpG protein
96	 52.24	0	109353..109664	-	103	119773238	-	Sama_0096	-	glpE protein
97	 55.75	0	109791..110816	-	341	119773239	tdh	Sama_0097	-	L-threonine 3-dehydrogenase
98	 56.03	0	110838..112031	-	397	119773240	-	Sama_0098	-	2-amino-3-ketobutyrate coenzyme A ligase
99	 49.53	-1	112290..112925	-	211	119773241	-	Sama_0099	-	TetR family transcriptional regulator
100	 57.32	0	113051..114313	+	420	119773242	-	Sama_0100	-	3-deoxy-D-manno-octulosonic-acid (KDO) transferase
53.89	MEAN

3.86	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.