IslandPath Analysis: Halobacterium sp. NRC-1



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 67.88   STD DEV: 5.16
Halobacterium sp. NRC-1, complete genome - 1..2014239
2075 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.34	0	248..1453	+	401	15789341	-	VNG0001H	-	hypothetical protein
2	 64.86	0	1450..2115	+	221	15789342	yvrO	VNG0002G	-	YvrO
3	 62.79	0	2145..3254	+	369	15789343	-	VNG0003C	-	hypothetical protein
4	 69.98	0	3322..5643	+	773	15789344	-	VNG0005H	-	hypothetical protein
5	 69.10	0	5646..7451	-	601	15789345	glmS	VNG0006G	-	hypothetical protein
6	 69.19	0	7454..8641	-	395	15789346	graD5	VNG0008G	-	GraD5
7	 69.24	0	8655..9860	-	401	15789347	graD2	VNG0009G	-	GraD2
8	 66.32	0	9980..11413	+	477	15789348	-	VNG0011C	-	hypothetical protein
9	 60.69	-1	11478..12614	-	378	15789349	-	VNG0013C	-	hypothetical protein
10	 59.05	-1	12978..13187	+	69	15789350	-	VNG0014C	-	hypothetical protein
11	 62.30	-1	13462..13644	-	60	15789351	-	VNG0015H	-	hypothetical protein
12	 61.29	-1	13809..14180	-	123	15789352	-	VNG0016H	-	hypothetical protein
13	 57.58	-1	14484..14780	+	98	15789353	-	VNG0017H	-	hypothetical protein
14	 56.44	-2	14868..15131	+	87	15789354	-	VNG0018H	-	hypothetical protein
15	 49.49	-2	15310..15408	+	32	15789355	-	VNG0019H	-	hypothetical protein
16	 46.29	-2	15419..16051	-	210	15789356	-	VNG0020H	-	hypothetical protein
17	 59.41	-1	16342..17706	+	454	15789357	-	VNG0021H	-	hypothetical protein
18	 58.06	-1	18357..18902	+	181	15789358	-	VNG0022H	-	hypothetical protein
19	 58.65	-1	18895..19530	+	211	15789359	-	VNG0023H	-	hypothetical protein
20	 59.19	-1	19703..20023	-	106	15789360	-	VNG0024H	-	hypothetical protein
21	 55.30	-2	20219..20482	-	87	15789361	-	VNG0025H	-	hypothetical protein
22	 59.85	-1	20533..21456	-	307	15789362	-	VNG0026C	-	hypothetical protein
23	 59.57	-1	22103..22750	-	215	15789363	-	VNG0027H	-	hypothetical protein
24	 57.66	-1	23336..23890	+	184	15789364	-	VNG0028C	-	hypothetical protein
25	 55.92	-2	24109..24564	-	151	15789365	-	VNG0029H	-	hypothetical protein
26	 54.55	-2	26201..26596	+	131	15789366	-	VNG0030H	-	hypothetical protein
27	 55.65	-2	26648..29008	+	786	15789367	-	VNG0031H	-	hypothetical protein
28	 50.78	-2	29046..29429	+	127	15789368	-	VNG0032H	-	hypothetical protein
29	 59.82	-1	29476..29913	-	145	15789369	-	VNG0033H	-	hypothetical protein
30	 61.76	-1	29913..30014	-	33	15789370	-	VNG0034H	-	hypothetical protein
31	 60.39	-1	30356..31168	-	270	15789371	-	VNG0035H	-	hypothetical protein
32	 56.63	-2	31838..32086	+	82	15789372	-	VNG0037H	-	hypothetical protein
33	 56.47	-2	32101..32355	+	84	15789373	-	VNG0038H	-	hypothetical protein
34	 57.44	-2	32555..32890	-	111	15789374	-	VNG0039H	-	hypothetical protein
35	 57.72	-1	33182..33628	-	148	15789375	-	VNG0040C	-	hypothetical protein
36	 59.80	-1	33610..33915	-	101	15789376	-	VNG0041C	-	hypothetical protein
37	 56.28	-2	34651..35931	-	426	15789377	ntp	VNG0042G	-	transposase
38	 54.96	-2	36321..36713	+	130	15789378	-	VNG0043H	-	hypothetical protein
39	 61.89	-1	36715..37971	+	418	15789379	-	VNG0044H	-	hypothetical protein
40	 56.71	-2	38017..39432	+	471	15789380	-	VNG0045C	-	hypothetical protein
41	 60.63	-1	39611..40903	-	430	15789381	ugd	VNG0046G	-	UDP-glucose dehydrogenase
42	 62.00	-1	40991..41719	+	242	16554457	graD6	VNG0047Gm	-	dTDP-glucose pyrophosphorylase
43	 40.00	-2	41880..42659	+	259	15789383	-	VNG0049H	-	hypothetical protein
44	 43.45	-2	42707..44149	+	480	15789384	-	VNG0050C	-	hypothetical protein
45	 50.58	-2	44245..45456	-	403	15789385	rfbU1	VNG0051G	-	LPS biosynthesis
46	 55.14	-2	47199..48473	-	424	15789386	-	VNG0052H	-	hypothetical protein
47	 51.97	-2	48767..49222	+	151	15789387	-	VNG0053H	-	hypothetical protein
48	 52.98	-2	49352..49972	-	206	15789388	-	VNG0054H	-	hypothetical protein
49	 54.31	-2	49985..50251	+	88	15789389	-	VNG0055H	-	hypothetical protein
50	 59.84	-1	50564..51970	-	468	15789390	-	VNG0056H	-	hypothetical protein
51	 52.64	-2	53192..54367	+	391	15789391	-	VNG0057H	-	hypothetical protein
52	 46.86	-2	54696..55745	-	349	15789392	-	VNG0058H	-	hypothetical protein
53	 59.06	-1	56287..57561	+	424	15789393	-	VNG0059H	-	hypothetical protein
54	 50.70	-2	57660..58661	-	333	15789394	lpg	VNG0060G	-	LPS glycosyltransferase
55	 53.83	-2	58827..60182	+	451	15789395	-	VNG0061C	-	hypothetical protein
56	 59.00	-1	60609..61625	-	338	15789396	lpb	VNG0062G	-	LPS biosynthesis protein
57	 60.59	-1	61700..62686	-	328	15789397	galE2	VNG0063G	-	GalE2
58	 57.88	-1	62927..63643	+	238	15789398	graD3	VNG0064G	-	GraD3
59	 61.94	-1	63881..64810	+	309	15789399	gmd	VNG0065G	-	GDP-D-mannose dehydratase
60	 58.87	-1	64976..65206	+	76	15789400	-	VNG0066H	-	hypothetical protein
61	 55.56	-2	65203..65472	+	89	15789401	-	VNG0067H	-	hypothetical protein
62	 57.41	-2	65671..65832	+	53	15789402	-	VNG0068H	-	hypothetical protein
63	 53.03	-2	66054..66251	+	65	15789403	-	VNG0069H	-	hypothetical protein
64	 57.82	-1	66241..66534	+	97	15789404	-	VNG0070H	-	hypothetical protein
65	 64.14	0	67057..67491	-	144	15789405	-	VNG0072H	-	hypothetical protein
66	 63.97	0	67908..68204	+	98	15789406	-	VNG0073C	-	hypothetical protein
67	 60.89	-1	68290..68514	+	74	15789407	-	VNG0075H	-	hypothetical protein
68	 54.17	-2	69300..69419	-	39	15789408	-	VNG0076H	-	hypothetical protein
69	 63.09	0	69967..70749	+	260	15789409	-	VNG0077H	-	hypothetical protein
70	 66.20	0	71127..71342	-	71	15789410	-	VNG0079H	-	hypothetical protein
71	 68.06	0	71317..71748	+	143	15789411	-	VNG0080H	-	hypothetical protein
72	 71.48	0	71811..72704	+	297	15789412	moaE	VNG0081G	-	hypothetical protein
73	 69.18	0	72708..73544	-	278	15789413	moeB	VNG0084G	-	MoeB
74	 69.38	0	73639..74742	+	367	15789414	moaA	VNG0085G	-	hypothetical protein
75	 75.74	+1	74752..76647	-	631	16554458	moeA2	VNG0086Gm	-	molybdopterin biosynthesis protein
76	 74.92	+1	76644..77867	-	407	15789416	moeA1	VNG0090G	-	MoeA1
77	 75.20	+1	77923..78660	-	245	15789417	pimT1	VNG0089G	-	L-isoaspartyl protein carboxyl methyltransferase
78	 76.07	+1	78683..79597	-	304	15789418	-	VNG0091C	-	hypothetical protein
79	 67.42	0	79662..80327	-	221	15789419	-	VNG0094C	-	hypothetical protein
80	 71.13	0	80387..81328	-	313	15789420	-	VNG0096C	-	hypothetical protein
81	 69.84	0	81452..82459	+	335	15789421	gapB	VNG0095G	-	glyceraldehyde-3-phosphate dehydrogenase
82	 64.34	0	82540..82926	+	128	15789422	hsp2	VNG0097G	-	Hsp2
83	 71.21	0	82932..83789	-	285	15789423	rimK	VNG0098G	-	RimK
84	 65.54	0	83885..84415	-	176	15789424	rpl10e	VNG0099G	-	50S ribosomal protein L10e
85	 58.22	-1	84617..84841	-	74	15789425	cspD1	VNG0101G	-	CspD1
86	 65.30	0	84927..85583	-	218	15789426	-	VNG0102C	-	hypothetical protein
87	 74.18	+1	85640..86611	-	323	15789427	serA3	VNG0104G	-	SerA3
88	 71.81	0	86734..87219	-	161	15789428	-	VNG0105H	-	hypothetical protein
89	 62.80	0	87668..89167	+	499	15789429	rmeM	VNG0106G	-	RmeM
90	 49.58	-2	89160..90587	+	475	15789430	rmeS	VNG0107G	-	RmeS
91	 63.04	0	90639..93641	+	1000	15789431	rmeR	VNG0108G	-	RmeR
92	 61.85	-1	93634..94359	+	241	15789432	-	VNG0110C	-	hypothetical protein
93	 58.99	-1	96010..96543	-	177	15789433	-	VNG0112H	-	hypothetical protein
94	 68.29	0	97444..98121	+	225	15789434	-	VNG0113H	-	hypothetical protein
95	 67.82	0	98226..99008	+	260	15789435	yusZ1	VNG0115G	-	YusZ1
96	 51.52	-2	100891..101715	-	274	15789436	-	VNG0116H	-	hypothetical protein
97	 65.22	0	102034..102309	-	91	15789437	-	VNG0117H	-	hypothetical protein
98	 64.32	0	102309..102692	-	127	15789438	-	VNG0118H	-	hypothetical protein
99	 60.38	-1	102863..103021	-	52	15789439	-	VNG0119H	-	hypothetical protein
100	 57.14	-2	103021..103146	-	41	15789440	-	VNG0120H	-	hypothetical protein
67.88	MEAN

5.16	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.