IslandPath Analysis: Prosthecochloris aestuarii DSM 271



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.15   STD DEV: 4.10
Prosthecochloris aestuarii DSM 271, complete genome - 1..2512923
2263 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.68	-1	1..1479	+	492	194332854	-	Paes_0001	-	chromosomal replication initiator protein DnaA
2	 41.05	-2	1749..2876	+	375	194332855	-	Paes_0002	-	DNA polymerase III, beta subunit
3	 41.51	-2	2893..4005	+	370	194332856	-	Paes_0003	-	DNA replication and repair protein RecF
4	 40.21	-2	4005..4295	+	96	194332857	-	Paes_0004	-	hypothetical protein
5	 42.81	-1	4367..5590	-	407	194332858	-	Paes_0005	-	beta-lactamase domain protein
6	 43.95	-1	5789..8191	-	800	194332859	-	Paes_0006	-	DNA polymerase B region
7	 47.72	0	8261..10123	-	620	194332860	-	Paes_0007	-	glucose inhibited division protein A
8	 47.95	0	10694..11131	+	145	194332861	-	Paes_0008	-	thiosulfate-binding protein SoxY
9	 46.28	0	11156..11464	+	102	194332862	-	Paes_0009	-	Sulphur oxidation protein SoxZ
10	 48.29	0	11525..11905	+	126	194332863	-	Paes_0010	-	cytochrome c class I
11	 49.57	0	11922..13214	+	430	194332864	-	Paes_0011	-	Flavocytochrome c sulphide dehydrogenase flavin-binding
12	 50.81	0	13381..15165	+	594	194332865	-	Paes_0012	-	protein-export membrane protein SecD
13	 49.46	0	15190..16119	+	309	194332866	-	Paes_0013	-	protein-export membrane protein SecF
14	 49.39	0	16227..17546	+	439	194332867	-	Paes_0014	-	SurA domain
15	 50.28	0	17535..19469	-	644	194332868	-	Paes_0015	-	DNA gyrase, B subunit
16	 50.26	0	19561..19944	-	127	194332869	-	Paes_0016	-	protein of unknown function UPF0102
17	 52.98	0	19959..20579	-	206	194332870	-	Paes_0017	-	Ribonuclease H
18	 55.21	+1	20672..20863	+	63	194332871	-	Paes_0018	-	hypothetical protein
19	 51.15	0	20912..22567	+	551	194332872	-	Paes_0019	-	ribonuclease, Rne/Rng family
20	 53.36	0	22582..23445	+	287	194332873	-	Paes_0020	-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase
21	 52.30	0	23505..25175	+	556	194332874	-	Paes_0021	-	carboxyl-terminal protease
22	 53.19	0	25177..25851	-	224	194332875	-	Paes_0022	-	hypothetical protein
23	 51.05	0	25852..26991	-	379	194332876	-	Paes_0023	-	geranylgeranyl reductase
24	 52.22	0	27054..28520	-	488	194332877	-	Paes_0024	-	glycyl-tRNA synthetase
25	 55.06	+1	28904..29377	+	157	194332878	-	Paes_0025	-	Rhodanese domain protein
26	 53.59	0	29460..29696	+	78	194332879	-	Paes_0026	-	SirA family protein
27	 56.49	+1	29764..31158	+	464	194332880	-	Paes_0027	-	cobyrinic acid a,c-diamide synthase
28	 52.08	0	31555..31890	+	111	194332881	-	Paes_0028	-	sulfur relay protein, TusE/DsrC/DsvC family
29	 55.42	+1	31945..33198	+	417	194332882	-	Paes_0029	-	sulfite reductase, dissimilatory-type alpha subunit
30	 54.81	+1	33271..34350	+	359	194332883	-	Paes_0030	-	sulfite reductase, dissimilatory-type beta subunit
31	 57.05	+1	34374..36110	+	578	194332884	-	Paes_0031	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
32	 55.11	+1	36155..36526	+	123	194332885	-	Paes_0032	-	hypothetical protein
33	 55.56	+1	36539..36898	+	119	194332886	-	Paes_0033	-	sulfur relay protein TusD/DsrE
34	 50.00	0	36903..37280	+	125	194332887	-	Paes_0034	-	sulfur relay protein TusC/DsrF
35	 51.36	0	37323..37616	+	97	194332888	-	Paes_0035	-	sulfur relay protein TusB/DsrH
36	 55.26	+1	37660..38106	+	148	194332889	-	Paes_0036	-	hypothetical protein
37	 51.10	0	38103..39098	+	331	194332890	-	Paes_0037	-	Nitrate reductase gamma subunit
38	 52.30	0	39101..40750	+	549	194332891	-	Paes_0038	-	DsrK protein
39	 53.85	0	40740..41129	+	129	194332892	-	Paes_0039	-	hypothetical protein
40	 55.47	+1	41126..41902	+	258	194332893	-	Paes_0040	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
41	 53.56	0	41912..43063	+	383	194332894	-	Paes_0041	-	Polysulphide reductase NrfD
42	 48.67	0	43180..43629	+	149	194332895	-	Paes_0042	-	porphyrin biosynthesis protein, putative
43	 53.28	0	43731..45119	+	462	194332896	-	Paes_0043	-	uroporphyrin-III C-methyltransferase
44	 51.02	0	45492..46079	+	195	194332897	-	Paes_0044	-	hypothetical protein
45	 51.32	0	46212..49535	-	1107	194332898	-	Paes_0045	-	Patatin
46	 52.04	0	49764..51404	+	546	194332899	-	Paes_0046	-	hypothetical protein
47	 47.71	0	51474..51779	-	101	194332900	-	Paes_0047	-	ATP-dependent Clp protease adaptor protein ClpS
48	 52.38	0	51861..52805	-	314	194332901	-	Paes_0048	-	Muramoyltetrapeptide carboxypeptidase
49	 49.44	0	52933..53199	-	88	194332902	-	Paes_0049	-	H+transporting two-sector ATPase delta/epsilon subunit
50	 53.28	0	53215..54603	-	462	194332903	-	Paes_0050	-	ATP synthase F1, beta subunit
51	 51.21	0	54943..55479	+	178	194332904	-	Paes_0051	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
52	 53.34	0	55552..57420	+	622	194332905	-	Paes_0052	-	Phosphoenolpyruvate carboxykinase (GTP)
53	 55.23	+1	57704..59119	+	471	194332906	-	Paes_0053	-	membrane protein involved in aromatic hydrocarbon degradation
54	 51.64	0	59254..59466	-	70	194332907	-	Paes_0054	-	protein of unknown function DUF1458
55	 55.49	+1	59965..61512	+	515	194332908	-	Paes_0055	-	4Fe-4S ferredoxin iron-sulfur binding domain protein
56	 56.37	+1	61525..64380	+	951	194332909	-	Paes_0056	-	molydopterin dinucleotide-binding region
57	 54.44	+1	64454..65410	+	318	194332910	-	Paes_0057	-	protein of unknown function DUF81
58	 55.95	+1	65414..65833	+	139	194332911	-	Paes_0058	-	hypothetical protein
59	 51.27	0	66039..66551	+	170	194332912	-	Paes_0059	-	hypothetical protein
60	 56.47	+1	66923..68776	-	617	194332913	-	Paes_0060	-	ATP-dependent DNA helicase RecQ
61	 45.35	-1	69351..70124	+	257	194332914	-	Paes_0062	-	putative restriction endonuclease
62	 47.62	0	70421..70714	+	97	194332915	-	Paes_0063	-	hypothetical protein
63	 44.97	-1	70711..71028	+	105	194332916	-	Paes_0064	-	transposase
64	 46.89	0	71029..71301	+	90	194332917	-	Paes_0065	-	transposase
65	 38.48	-2	71761..72810	+	349	194332918	-	Paes_0067	-	FRG domain protein
66	 33.33	-2	74650..75186	+	178	194332919	-	Paes_0069	-	hypothetical protein
67	 33.92	-2	75189..76901	+	570	194332920	-	Paes_0070	-	RelA/SpoT domain protein
68	 46.88	0	78529..79089	-	186	194332921	-	Paes_0073	-	transposase
69	 46.84	0	79125..79598	-	157	194332922	-	Paes_0074	-	transposase
70	 43.33	-1	79824..80033	-	69	194332923	-	Paes_0075	-	RNA-directed DNA polymerase
71	 50.50	0	80534..80935	-	133	194332924	-	Paes_0077	-	hypothetical protein
72	 44.56	-1	80932..81225	-	97	194332925	-	Paes_0078	-	transposase IS3/IS911 family protein
73	 49.81	0	81364..81630	-	88	194332926	-	Paes_0079	-	transposase IS3/IS911 family protein
74	 44.30	-1	81946..82173	-	75	194332927	-	Paes_0080	-	hypothetical protein
75	 48.91	0	82313..83596	-	427	194332928	-	Paes_0081	-	transposase IS116/IS110/IS902 family protein
76	 51.43	0	83916..84545	-	209	194332929	-	Paes_0082	-	hypothetical protein
77	 55.64	+1	84645..85397	+	250	194332930	-	Paes_0083	-	Methyltransferase type 11
78	 56.37	+1	85416..85784	+	122	194332931	-	Paes_0084	-	hypothetical protein
79	 52.14	0	85860..85976	+	38	194332932	-	Paes_0085	-	hypothetical protein
80	 53.58	0	86113..87594	+	493	194332933	-	Paes_0086	-	RNA-directed DNA polymerase (Reverse transcriptase)
81	 60.28	+2	87602..87883	+	93	194332934	-	Paes_0087	-	hypothetical protein
82	 55.27	+1	88032..88496	+	154	194332935	-	Paes_0088	-	putative transmembrane protein
83	 54.87	+1	88680..89018	+	112	194332936	-	Paes_0089	-	alkylphosphonate utilization operon protein PhnA
84	 53.19	0	89027..89731	-	234	194332937	-	Paes_0090	-	DNA alkylation repair enzyme
85	 56.58	+1	89837..91165	+	442	194332938	-	Paes_0091	-	major facilitator superfamily MFS_1
86	 55.85	+1	91301..91753	+	150	194332939	-	Paes_0092	-	methionine-R-sulfoxide reductase
87	 53.11	0	91813..92808	-	331	194332940	-	Paes_0093	-	hypothetical protein
88	 55.44	+1	92962..95259	+	765	194332941	-	Paes_0094	-	NADH dehydrogenase (quinone)
89	 56.43	+1	95262..95681	+	139	194332942	-	Paes_0095	-	Na+/H+ antiporter MnhB subunit-related protein
90	 57.18	+1	95678..96046	+	122	194332943	-	Paes_0096	-	NADH-ubiquinone oxidoreductase chain 4L
91	 55.07	+1	96043..97560	+	505	194332944	-	Paes_0097	-	NADH dehydrogenase (quinone)
92	 52.53	0	97557..98030	+	157	194332945	-	Paes_0098	-	cation antiporter
93	 49.82	0	98027..98299	+	90	194332946	-	Paes_0099	-	multiple resistance and pH regulation protein F
94	 55.36	+1	98296..98640	+	114	194332947	-	Paes_0100	-	monovalent cation/proton antiporter, MnhG/PhaG subunit
95	 56.00	+1	98669..99727	-	352	194332948	-	Paes_0101	-	phytase
96	 53.26	0	99809..102649	-	946	194332949	-	Paes_0102	-	TonB-dependent receptor
97	 52.11	0	102852..103325	+	157	194332950	-	Paes_0103	-	hypothetical protein
98	 57.59	+1	103392..105353	-	653	194332951	-	Paes_0104	-	alpha amylase catalytic region
99	 53.48	0	105571..106518	+	315	194332952	-	Paes_0105	-	Cache type 2 domain protein
100	 54.92	+1	106537..107889	+	450	194332953	-	Paes_0106	-	Xanthine/uracil/vitamin C permease
50.15	MEAN

4.10	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.