IslandPath Analysis: Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 36.17   STD DEV: 3.74
Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130 chromosome I, complete sequence - 1..4277185
3394 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 31.61	-1	292..1623	+	443	45655915	dnaA	LIC10001	-	chromosomal replication initiator protein
2	 32.35	-1	3279..4400	+	373	45655916	dnaN	LIC10002	-	DNA polymerase III beta subunit
3	 30.42	-1	5062..6159	+	365	45655917	recF	LIC10003	-	DNA repair and genetic recombination protein
4	 32.47	0	6156..6620	+	154	45655918	-	LIC10004	-	hypothetical protein
5	 37.14	0	6686..8605	+	639	45655919	-	LIC10005	-	DNA gyrase subunit B
6	 36.33	0	8624..11128	+	834	45655920	gyrA	LIC10006	-	DNA gyrase subunit A
7	 37.58	0	11133..12122	+	329	45655921	-	LIC10007	-	nifR3-like protein
8	 44.35	+2	12129..12473	+	114	45655922	-	LIC10008	-	hypothetical protein
9	 34.15	0	12715..13452	+	245	45655923	-	LIC10009	-	putative lipoprotein
10	 35.13	0	13804..14805	-	333	45655924	-	LIC10010	-	hypothetical protein
11	 41.53	+1	15216..15776	-	186	45655925	lipL21	LIC10011	-	LipL21
12	 33.27	0	15855..17462	+	535	45655926	-	LIC10012	-	hypothetical protein
13	 32.44	0	17484..18377	+	297	45655927	-	LIC10013	-	sigma 54 activator
14	 31.50	-1	18319..19407	-	362	45655928	-	LIC10014	-	hypothetical protein
15	 40.74	+1	19980..20195	+	71	45655929	-	LIC10015	-	hypothetical protein
16	 32.09	-1	20186..20749	-	187	45655930	maf	LIC10016	-	Maf-like protein
17	 32.67	0	20801..21706	+	301	45655931	-	LIC10017	-	hypothetical protein
18	 31.35	-1	21851..22354	+	167	45655932	-	LIC10018	-	putative lipoprotein
19	 38.71	0	22359..23102	+	247	45655933	-	LIC10019	-	3-oxoacyl-acyl carrier protein reductase
20	 32.35	-1	23118..23726	+	202	45655934	-	LIC10020	-	hypothetical protein
21	 40.29	+1	24216..25898	+	560	45655935	-	LIC10021	-	putative lipoprotein
22	 31.13	-1	26728..27090	-	120	45655936	-	LIC10022	-	arsenate reductase
23	 40.34	+1	28185..29198	+	337	45655937	fliG	LIC10023	-	flagellar motor switch protein G
24	 30.57	-1	29263..31539	+	758	45655938	-	LIC10024	-	adenylate/guanylate cyclase
25	 30.11	-1	32228..32785	+	185	45655939	-	LIC10025	-	hypothetical protein
26	 30.31	-1	32934..33959	+	341	45655940	-	LIC10026	-	hypothetical protein
27	 40.57	+1	34184..34888	+	234	45655941	-	LIC10027	-	hypothetical protein
28	 36.39	0	34892..35251	+	119	45655942	-	LIC10028	-	putative lipoprotein
29	 40.40	+1	35248..36096	-	282	45655943	-	LIC10029	-	inositol monophosphatase
30	 33.33	0	36116..37027	-	303	45655944	-	LIC10030	-	hypothetical protein
31	 35.86	0	37639..39615	-	658	45655945	lacZ	LIC10031	-	beta-galactosidase
32	 35.90	0	39801..40658	+	285	45655946	-	LIC10032	-	hypothetical protein
33	 29.67	-1	40666..41238	+	190	45655947	-	LIC10033	-	hypothetical protein
34	 34.20	0	41220..41915	+	231	45655948	-	LIC10034	-	hypothetical protein
35	 32.67	0	41921..44176	+	751	45655949	rnR	LIC10035	-	ribonuclease R
36	 34.11	0	44336..44848	+	170	45655950	-	LIC10036	-	hypothetical protein
37	 39.10	0	44852..46465	+	537	45655951	-	LIC10037	-	GMC oxidoreductase
38	 32.74	0	46607..48115	+	502	45655952	-	LIC10038	-	hypothetical protein
39	 30.64	-1	48326..49030	-	234	45655953	aroD	LIC10039	-	3-dehydroquinate dehydratase
40	 35.91	0	49034..50002	-	322	45655954	kpsF	LIC10040	-	polysialic acid capsule expression protein
41	 33.89	0	49986..50525	-	179	45655955	-	LIC10041	-	transcription activator or transcription antitermination factor
42	 31.04	-1	50509..50988	-	159	45655956	-	LIC10042	-	hypothetical protein
43	 35.81	0	52070..53767	+	565	45655957	aer	LIC10043	-	Aer
44	 37.54	0	54372..55250	+	292	45655958	-	LIC10044	-	hypothetical protein
45	 37.91	0	55247..56185	+	312	45655959	-	LIC10045	-	dTDP-glucose 4-6-dehydratase
46	 39.91	+1	56259..57428	+	389	45655960	pntA	LIC10046	-	proton-translocating transhydrogenase, subunit alpha part 1
47	 39.11	0	57387..57923	-	178	45655961	-	LIC10047	-	hypothetical protein
48	 36.29	0	57920..59239	-	439	45655962	hisS	LIC10048	-	histidyl-tRNA synthetase
49	 35.68	0	59246..60394	-	382	45655963	-	LIC10049	-	hypothetical protein
50	 36.00	0	60404..62467	-	687	45655964	-	LIC10050	-	peptidoglycan-associated cytoplasmic membrane protein
51	 32.62	0	62561..63403	+	280	45655965	folP	LIC10051	-	7,8-dihydropteroate synthase protein
52	 30.14	-1	64172..65422	-	416	45655966	-	LIC10052	-	hypothetical protein
53	 33.89	0	65480..66382	-	300	45655967	-	LIC10053	-	hypothetical protein
54	 36.54	0	66432..67397	+	321	45655968	rlpA	LIC10054	-	putative lipoprotein
55	 40.11	+1	68117..68824	-	235	45655969	cysE	LIC10055	-	serine acetyltransferase
56	 36.35	0	69026..69952	+	308	45655970	-	LIC10056	-	hypothetical protein
57	 35.65	0	70123..71331	+	402	45655971	-	LIC10057	-	hypothetical protein
58	 31.67	-1	72115..73497	-	460	45655972	-	LIC10058	-	drug:Na+ antiporter
59	 36.53	0	73514..74797	-	427	45655973	-	LIC10059	-	proton glutamate symport protein
60	 34.90	0	74937..78122	+	1061	45655974	-	LIC10060	-	hypothetical protein
61	 34.68	0	78115..79005	+	296	45655975	-	LIC10061	-	hypothetical protein
62	 28.51	-2	79606..79833	+	75	45655976	-	LIC10062	-	hypothetical protein
63	 33.33	0	79879..83085	+	1068	45655977	-	LIC10063	-	histidine kinase sensor protein
64	 39.54	0	83798..84280	-	160	45655978	-	LIC10064	-	hypothetical protein
65	 35.06	0	84344..84865	-	173	45655979	dcd	LIC10065	-	deoxycytidine triphosphate deaminase
66	 37.93	0	84866..85648	-	260	45655980	-	LIC10066	-	enoyl-CoA hydratase/isomerase family protein
67	 36.23	0	85681..86475	+	264	45655981	-	LIC10067	-	hypothetical protein
68	 41.90	+1	87380..87589	+	69	45655982	-	LIC10068	-	hypothetical protein
69	 33.58	0	87678..88076	-	132	45655983	glo1	LIC10069	-	glyoxylase I
70	 31.04	-1	88156..89244	-	362	45655984	-	LIC10070	-	hypothetical protein
71	 35.59	0	89241..90881	-	546	45655985	-	LIC10071	-	hypothetical protein
72	 31.47	-1	90975..91724	+	249	45655986	-	LIC10072	-	hypothetical protein
73	 34.98	0	91713..92564	-	283	45655987	-	LIC10073	-	3-demethylubiquinone-9 3-methyltransferase
74	 39.95	+1	92703..93548	+	281	45655988	dapF	LIC10074	-	diaminopimelate epimerase
75	 36.15	0	93555..94265	-	236	45655989	-	LIC10075	-	hypothetical protein
76	 41.75	+1	94298..94582	-	94	45655990	-	LIC10076	-	hypothetical protein
77	 34.20	0	96008..96355	+	115	45655991	-	LIC10077	-	hypothetical protein
78	 31.94	-1	96359..96934	-	191	45655992	-	LIC10078	-	hypothetical protein
79	 40.45	+1	97126..97659	-	177	45655993	-	LIC10079	-	hypothetical protein
80	 27.49	-2	98030..98851	-	273	45655994	-	LIC10080	-	hypothetical protein
81	 35.20	0	99567..99887	-	106	45655995	-	LIC10082	-	hypothetical protein
82	 35.12	0	99931..100377	-	148	45655996	-	LIC10083	-	hypothetical protein
83	 32.85	0	100706..101953	+	415	45655997	-	LIC10086	-	RNA methyltransferase
84	 30.15	-1	102232..102891	+	219	45655998	-	LIC10087	-	hypothetical protein
85	 38.56	0	103786..105066	+	426	45655999	-	LIC10088	-	hypothetical protein
86	 34.30	0	105286..106011	+	241	45656000	-	LIC10089	-	hypothetical protein
87	 38.70	0	106049..107596	+	515	45656001	-	LIC10090	-	hypothetical protein
88	 35.82	0	107605..108648	+	347	45656002	-	LIC10091	-	putative lipoprotein
89	 29.02	-1	108645..109502	+	285	45656003	-	LIC10092	-	metallo-beta-lactamase
90	 33.33	0	109973..110899	-	308	45656004	-	LIC10093	-	hypothetical protein
91	 36.69	0	111018..113075	-	685	45656005	-	LIC10094	-	long-chain-fatty-acid CoA ligase
92	 37.54	0	113248..113604	-	118	45656006	-	LIC10095	-	hypothetical protein
93	 35.30	0	113577..114236	-	219	45656007	aat	LIC10096	-	leucyl/phenylalanyl-tRNA--protein transferase
94	 34.97	0	114286..114834	-	182	45656008	ligT	LIC10097	-	2'-5' RNA ligase
95	 32.26	-1	114882..116657	-	591	45656009	pabB	LIC10098	-	para-aminobenzoate synthase component I
96	 35.65	0	116680..118833	+	717	45656010	-	LIC10099	-	histidine kinase sensor protein
97	 29.90	-1	119602..119805	-	67	45656011	-	LIC10100	-	hypothetical protein
98	 34.26	0	120143..121645	-	500	45656012	met-7	LIC10101	-	cystathionine gamma-synthase
99	 38.40	0	121705..122769	-	354	45656013	prfA	LIC10102	-	peptide chain release factor 1
100	 37.79	0	122810..123415	+	201	45656014	-	LIC10103	-	hypothetical protein
36.17	MEAN

3.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.