IslandPath Analysis: Campylobacter jejuni subsp. jejuni 81-176



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 30.58   STD DEV: 3.77
Campylobacter jejuni subsp. jejuni 81-176, complete genome - 1..1616554
1653 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 30.23	0	1..1323	+	440	121612751	dnaA	CJJ81176_0027	-	chromosomal replication initiation protein
2	 25.94	-1	1483..2550	+	355	121612492	dnaN	CJJ81176_0028	-	DNA polymerase III subunit beta
3	 33.03	0	2579..4888	+	769	121612557	gyrB	CJJ81176_0029	-	DNA gyrase subunit B
4	 30.99	0	4914..5255	-	113	121612266	-	CJJ81176_0030	-	hypothetical protein
5	 32.93	0	5258..6496	-	412	121613203	-	CJJ81176_0031	-	molybdopterin oxidoreductase family protein
6	 31.95	0	6707..8008	+	433	121612732	-	CJJ81176_0032	-	Na+/H+ antiporter family protein
7	 34.98	+1	8142..12629	+	1495	121613706	gltB	CJJ81176_0033	-	glutamate synthase, large subunit
8	 23.00	-2	12649..14370	+	573	121612537	-	CJJ81176_0034	-	hypothetical protein
9	 34.58	+1	14381..15826	+	481	121613542	gltD	CJJ81176_0035	-	glutamate synthase subunit beta
10	 32.29	0	15827..16402	-	191	121612583	rnhB	CJJ81176_0036	-	ribonuclease HII
11	 27.50	0	16435..16674	-	79	121613207	comEA	CJJ81176_0037	-	competence protein ComEA
12	 35.87	+1	16739..17290	-	183	121612692	rbr	CJJ81176_0038	-	rubrerythrin
13	 37.21	+1	17546..19222	+	558	121613697	ilvD	CJJ81176_0039	-	dihydroxy-acid dehydratase
14	 34.67	+1	19234..19383	-	49	121612806	-	CJJ81176_0040	-	inner membrane protein YagU
15	 35.82	+1	19349..19630	-	93	121612314	-	CJJ81176_0041	-	membrane protein, putative, degenerate
16	 32.52	0	19722..20948	-	408	121613008	-	CJJ81176_0042	-	hypothetical protein
17	 34.07	0	21025..21699	+	224	121612477	-	CJJ81176_0043	-	exsB protein
18	 33.27	0	21720..23246	-	508	121613521	-	CJJ81176_0044	-	DsbB family disulfide bond formation protein
19	 31.55	0	23258..23425	-	55	121613284	-	CJJ81176_0045	-	hypothetical protein
20	 27.69	0	23531..25285	-	584	121612100	-	CJJ81176_0046	-	methyl-accepting chemotaxis protein
21	 32.02	0	25299..26213	-	304	121612556	ccpA-1	CJJ81176_0047	-	cytochrome c551 peroxidase
22	 31.85	0	26277..27155	-	292	121612391	-	CJJ81176_0048	-	fumarylacetoacetate hydrolase family protein
23	 29.46	0	27267..28169	-	300	121613293	-	CJJ81176_0049	-	RNA pseudouridine synthase family protein
24	 34.24	0	28247..29575	+	442	121612216	purB-1	CJJ81176_0050	-	adenylosuccinate lyase
25	 33.54	0	29591..31960	+	789	121613048	nrdA	CJJ81176_0051	-	ribonucleotide-diphosphate reductase subunit alpha
26	 31.31	0	31999..33384	-	461	121612756	-	CJJ81176_0052	-	sodium/dicarboxylate symporter
27	 34.29	0	33504..34127	-	207	121613393	thyX	CJJ81176_0053	-	FAD-dependent thymidylate synthase
28	 34.31	0	34247..35878	+	543	121612860	pyrG	CJJ81176_0054	-	CTP synthetase
29	 29.71	0	35865..37436	+	523	121612339	recJ	CJJ81176_0055	-	single-stranded-DNA-specific exonuclease RecJ
30	 34.77	+1	37522..38568	+	348	121612621	ansA	CJJ81176_0056	-	L-asparaginase
31	 18.30	-2	44542..44694	-	50	121613586	-	CJJ81176_0061	-	hypothetical protein
32	 34.86	+1	45264..47234	+	656	121612652	-	CJJ81176_0063	-	hypothetical protein
33	 33.00	0	47275..49344	+	689	121612148	-	CJJ81176_0064	-	cytochrome c family protein
34	 25.30	-1	49388..49972	+	194	121612852	-	CJJ81176_0065	-	hypothetical protein
35	 30.04	0	49965..52670	+	901	121612515	-	CJJ81176_0066	-	cytochrome c biogenesis protein
36	 37.22	+1	52705..54375	-	556	121613257	ggt	CJJ81176_0067	-	gamma-glutamyltransferase
37	 31.49	0	54605..58339	+	1244	121612693	-	CJJ81176_0068	-	type II restriction-modification enzyme
38	 23.84	-1	58339..59223	+	294	121613607	-	CJJ81176_0069	-	hypothetical protein
39	 24.67	-1	59461..60903	+	480	121612434	-	CJJ81176_0070	-	transglycosylase domain-containing protein
40	 23.80	-1	61018..62559	+	513	121613387	-	CJJ81176_0071	-	putative integral membrane protein
41	 33.05	0	62588..63289	-	233	121612271	-	CJJ81176_0072	-	hypothetical protein
42	 35.31	+1	63276..64487	-	403	121613225	-	CJJ81176_0073	-	Bcr/CflA subfamily drug resistance transporter
43	 31.33	0	64590..65939	+	449	121612999	-	CJJ81176_0074	-	hypothetical protein
44	 36.88	+1	65963..67006	-	347	121612292	-	CJJ81176_0075	-	cytochrome c family protein
45	 24.54	-1	67184..67831	-	215	121613635	-	CJJ81176_0076	-	hypothetical protein
46	 37.20	+1	67831..69639	-	602	121612682	typA	CJJ81176_0077	-	GTP-binding protein TypA
47	 21.30	-2	69774..70097	+	107	121612574	-	CJJ81176_0078	-	hypothetical protein
48	 26.23	-1	70117..71946	+	609	121612481	-	CJJ81176_0079	-	hypothetical protein
49	 36.84	+1	72000..72884	+	294	121613172	flgD	CJJ81176_0080	-	flagellar basal body rod modification protein
50	 34.07	0	72888..74525	+	545	121612241	flgE-1	CJJ81176_0081	-	flagellar hook protein
51	 25.36	-1	74529..76397	-	622	121612936	-	CJJ81176_0082	-	hypothetical protein
52	 25.52	-1	76682..77116	-	144	121613643	-	CJJ81176_0083	-	hypothetical protein
53	 33.33	0	77645..77764	+	39	121612159	-	CJJ81176_0084	-	hypothetical protein
54	 34.82	+1	77987..78322	+	111	121613331	-	CJJ81176_0085	-	anion transporter
55	 38.33	+2	78274..78453	+	59	121612408	-	CJJ81176_0086	-	anion transporter
56	 32.81	0	78413..78604	+	63	121613497	-	CJJ81176_0087	-	2-oxoglutarate/malate translocator
57	 39.29	+2	78615..78782	+	55	121612875	-	CJJ81176_0088	-	anion transporter
58	 35.04	+1	78801..79151	+	116	121613645	-	CJJ81176_0089	-	2-oxoglutarate/malate translocator
59	 33.04	0	79179..80195	-	338	121613044	trmU	CJJ81176_0090	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
60	 30.69	0	80195..80800	-	201	121612195	-	CJJ81176_0091	-	lysine decarboxylase family protein
61	 28.26	0	80921..81709	-	262	121613153	-	CJJ81176_0092	-	hypothetical protein
62	 34.01	0	81723..82316	-	197	121612458	-	CJJ81176_0093	-	hypothetical protein
63	 31.63	0	82860..83504	+	214	121613168	-	CJJ81176_0094	-	HmcD domain-containing protein
64	 27.94	0	83489..83692	+	67	121612336	-	CJJ81176_0095	-	peptidase family protein
65	 29.74	0	83698..84087	+	129	121613047	-	CJJ81176_0096	-	peptidase family protein
66	 33.82	0	84136..84957	-	273	121612924	fliY	CJJ81176_0097	-	flagellar motor switch protein FliY
67	 34.07	0	84975..86054	-	359	121613064	fliM	CJJ81176_0098	-	flagellar motor switch protein FliM
68	 32.61	0	86054..86746	-	230	121612660	fliA	CJJ81176_0099	-	flagellar biosynthesis sigma factor
69	 26.61	-1	86727..87083	-	118	121613389	-	CJJ81176_0100	-	hypothetical protein
70	 30.91	0	87102..87968	-	288	121613262	-	CJJ81176_0101	-	ParaA family ATPase
71	 30.45	0	87961..89415	-	484	121613495	flhF	CJJ81176_0102	-	flagellar biosynthesis regulator FlhF
72	 30.80	0	89425..89898	-	157	121612539	folK	CJJ81176_0103	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
73	 35.21	+1	89901..90380	-	159	121612990	aroQ	CJJ81176_0104	-	3-dehydroquinate dehydratase
74	 28.94	0	90471..91700	+	409	121612374	-	CJJ81176_0105	-	chlorohydrolase
75	 32.55	0	91688..92584	+	298	121613641	sppA	CJJ81176_0106	-	signal peptide peptidase SppA, 36K type
76	 34.50	+1	92663..93694	+	343	121612896	-	CJJ81176_0107	-	hypothetical protein
77	 26.02	-1	93707..93829	+	40	121612413	-	CJJ81176_1709	-	hypothetical protein
78	 24.79	-1	93936..94052	-	38	121613131	-	CJJ81176_0108	-	hemerythrin family non-heme iron protein
79	 26.26	-1	94262..94558	-	98	121612681	-	CJJ81176_0109	-	hypothetical protein
80	 30.75	0	94731..95387	-	218	121613178	-	CJJ81176_0110	-	hypothetical protein
81	 34.86	+1	95380..96819	-	479	121612415	-	CJJ81176_0111	-	iron-sulfur cluster binding protein
82	 33.47	0	96816..97556	-	246	121612704	-	CJJ81176_0112	-	hypothetical protein
83	 35.18	+1	97679..99361	-	560	121612542	lctP	CJJ81176_0113	-	L-lactate permease
84	 31.23	0	99533..100102	-	189	121613490	cdtC	CJJ81176_0114	-	cytolethal distending toxin, subunit C
85	 36.34	+1	100113..100910	-	265	121612768	cdtB	CJJ81176_0115	-	cytolethal distending toxin, subunit B
86	 34.20	0	100907..101713	-	268	121613564	cdtA	CJJ81176_0116	-	cytolethal distending toxin, subunit A
87	 21.48	-2	101790..102059	+	89	121613710	-	CJJ81176_0117	-	hypothetical protein
88	 34.74	+1	102060..103622	+	520	121612182	cydA	CJJ81176_0118	-	cytochrome d ubiquinol oxidase, subunit I
89	 31.29	0	103622..104746	+	374	121613219	cydB	CJJ81176_0119	-	cytochrome d ubiquinol oxidase, subunit II
90	 26.44	-1	104940..105635	-	231	121612261	-	CJJ81176_0120	-	aspartate racemase, putative
91	 28.74	0	105755..106450	-	231	121612589	ung	CJJ81176_0121	-	uracil-DNA glycosylase
92	 33.33	0	106721..108127	+	468	121613732	aspA	CJJ81176_0122	-	aspartate ammonia-lyase
93	 37.25	+1	108153..109481	+	442	121612684	dcuA	CJJ81176_0123	-	anaerobic C4-dicarboxylate transporter
94	 28.27	0	109589..110950	+	453	121613226	-	CJJ81176_0124	-	putative lipoprotein
95	 27.10	0	110960..111328	+	122	121613232	-	CJJ81176_0125	-	putative lipoprotein
96	 35.10	+1	111352..111975	+	207	121613530	-	CJJ81176_0126	-	putative lipoprotein
97	 30.72	0	112057..113394	+	445	121613576	-	CJJ81176_0127	-	hypothetical protein
98	 32.50	0	113404..114606	+	400	121612858	-	CJJ81176_0128	-	hypothetical protein
99	 35.28	+1	114765..115073	+	102	121612829	rplU	CJJ81176_0129	-	50S ribosomal protein L21
100	 37.25	+1	115084..115338	+	84	121613378	rpmA	CJJ81176_0130	-	50S ribosomal protein L27
30.58	MEAN

3.77	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.