IslandPath Analysis: Candidatus Blochmannia pennsylvanicus str. BPEN



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.96   STD DEV: 3.14
Candidatus Blochmannia pennsylvanicus str. BPEN, complete genome - 1..791654
610 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.76	0	1..1899	+	632	71891794	gidA	BPEN_001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 31.23	0	2617..3426	+	269	71891795	atpB	BPEN_002	-	F0F1 ATP synthase subunit A
3	 37.92	+1	3466..3705	+	79	71891796	atpE	BPEN_003	-	F0F1 ATP synthase subunit C
4	 30.23	0	3765..4247	+	160	71891797	atpF	BPEN_004	-	F0F1 ATP synthase subunit B
5	 28.75	-1	4248..4793	+	181	71891798	atpH	BPEN_005	-	ATP synthase, F1 sector, delta-subunit
6	 35.80	+1	4831..6372	+	513	71891799	atpA	BPEN_006	-	F0F1 ATP synthase subunit alpha
7	 31.14	0	6405..7271	+	288	71891800	atpG	BPEN_007	-	F0F1 ATP synthase subunit gamma
8	 34.85	0	7302..8690	+	462	71891801	atpD	BPEN_008	-	F0F1 ATP synthase subunit beta
9	 31.26	0	8728..9162	+	144	71891802	atpC	BPEN_009	-	ATP synthase, F1 sector, epsilon-subunit
10	 32.97	0	9294..10682	+	462	71891803	glmU	BPEN_010	-	N-acetyl glucosamine-1-phosphate uridyltransferase
11	 31.21	0	10913..12325	-	470	71891804	trmE	BPEN_011	-	tRNA modification GTPase TrmE
12	 28.79	-1	12400..14316	-	638	71891805	yidCD	BPEN_012	-	hypothetical protein
13	 31.03	0	14295..14642	-	115	71891806	rnpA	BPEN_013	-	RNase P, protein component
14	 39.22	+2	14666..14818	-	50	71891807	rmpH	BPEN_014	-	50S ribosomal subunit protein L34
15	 30.62	0	15161..16264	+	367	71891808	dnaN	BPEN_015	-	DNA polymerase III, beta-subunit
16	 33.08	0	16575..18989	+	804	71891809	gyrB	BPEN_016	-	DNA gyrase, subunit B
17	 27.01	-1	19201..19611	+	136	71891810	ibpA	BPEN_017	-	heat shock protein A
18	 26.39	-1	19765..20772	-	335	71891811	-	BPEN_018	-	transmembrane protein
19	 31.15	0	21218..22132	+	304	71891812	glyQ	BPEN_019	-	glycyl-tRNA synthetase subunit alpha
20	 29.17	0	22156..24243	+	695	71891813	glyS	BPEN_020	-	glycine-tRNA synthetase, beta subunit
21	 30.42	0	24354..24971	-	205	71891814	sodA	BPEN_021	-	superoxide dismutase (Mn)
22	 31.02	0	25566..27638	+	690	71891815	prlC	BPEN_023	-	oligopeptidase A
23	 32.04	0	28064..29686	-	540	71891816	pitA	BPEN_024	-	inorganic phosphate transporter
24	 30.70	0	30037..30909	+	290	71891817	ubiA	BPEN_025	-	4-hydroxybenzoate octaprenyltransferase
25	 32.70	0	31195..31668	-	157	71891818	zur	BPEN_026	-	Zn transport system transcriptional repressor
26	 33.69	0	32173..33588	+	471	71891819	dnaB	BPEN_027	-	replicative DNA helicase
27	 36.18	+1	34030..34521	+	163	71891820	ssb	BPEN_028	-	ssDNA-binding protein controls activity of RecBCD nuclease
28	 35.40	+1	35067..36710	+	547	71891821	yjcE	BPEN_029	-	CPA1 family Na+/H+ antiporter
29	 33.10	0	37404..38693	+	429	71891822	gltP	BPEN_030	-	glutamate/aspartate:proton symporter
30	 31.84	0	39009..39410	-	133	71891823	yjgF	BPEN_031	-	putative translation initiation inhibitor
31	 31.19	0	39495..40520	-	341	71891824	argI	BPEN_032	-	ornithine carbamoyltransferase subunit I
32	 30.17	0	40789..43662	-	957	71891825	valS	BPEN_033	-	valine tRNA synthetase
33	 30.02	0	43659..44111	-	150	71891826	holC	BPEN_034	-	DNA polymerase III, chi subunit
34	 31.94	0	44226..45737	-	503	71891827	pepA	BPEN_035	-	cytosol aminopeptidase
35	 24.87	-2	45983..47104	+	373	71891828	yjgP	BPEN_036	-	putative transmembrane protein, transport
36	 27.84	-1	47110..48183	+	357	71891829	yjgQ	BPEN_037	-	putative transmembrane protein, transport
37	 28.56	-1	48217..49116	-	299	71891830	yidZ	BPEN_038	-	transcriptional regulator
38	 38.41	+2	49993..50130	+	45	71891831	-	BPEN_040	-	hypothetical protein
39	 33.49	0	50149..50796	+	215	71891832	znuC	BPEN_041	-	high-affinity Zn ABC transporter ATP-binding protein
40	 30.78	0	50887..51747	+	286	71891833	znuB	BPEN_042	-	high-affinity Zn ABC transporter membrane protein
41	 30.58	0	52506..53231	-	241	71891834	yhbG	BPEN_043	-	ABC transporter ATP-binding protein
42	 26.27	-1	53277..53786	-	169	71891835	yhbN	BPEN_044	-	ABC transporter periplasmic substrate-binding protein
43	 26.38	-1	53764..54381	-	205	71891836	yrbK	BPEN_045	-	hypothetical protein
44	 28.15	-1	56953..57222	+	89	71891837	yrbA	BPEN_046	-	BolA family transcriptional regulator
45	 36.89	+1	57272..58537	+	421	71891838	murA	BPEN_047	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
46	 35.08	0	58826..60199	-	457	71891839	degQ	BPEN_048	-	serine protease
47	 23.56	-2	60426..60824	-	132	71891840	yhcB	BPEN_049	-	hypothetical protein
48	 31.49	0	61354..61788	+	144	71891841	rplM	BPEN_050	-	50S ribosomal protein L13
49	 35.59	+1	61816..62214	+	132	71891842	rpsI	BPEN_051	-	30S ribosomal subunit protein S9
50	 29.10	0	63709..64299	-	196	71891843	yraP	BPEN_052	-	putative periplasmic protein
51	 32.89	0	64871..65764	+	297	71891844	yraL	BPEN_053	-	hypothetical protein
52	 29.63	0	66815..67381	+	188	71891845	yqjA	BPEN_055	-	hypothetical protein
53	 33.01	0	67947..69782	-	611	71891846	rpoD	BPEN_057	-	RNA polymerase sigma-70 factor
54	 29.04	0	69956..71701	-	581	71891847	dnaG	BPEN_058	-	DNA primase
55	 31.94	0	71861..72076	-	71	71891848	rpsU	BPEN_059	-	30S ribosomal subunit protein S21
56	 36.84	+1	72239..73264	+	341	71891849	gcp	BPEN_060	-	putative O-sialoglycoprotein endopeptidase
57	 34.18	0	73289..73876	-	195	71891850	ygiH	BPEN_061	-	hypothetical protein
58	 28.65	-1	73996..74379	+	127	71891851	folB	BPEN_062	-	dihydroneopterin aldolase, also has dihydroneopterin triphosphate
59	 28.93	0	74475..75359	+	294	71891852	bacA	BPEN_063	-	bacitracin resistance protein
60	 33.66	0	75623..76849	-	408	71891853	cca	BPEN_064	-	tRNA CCA-pyrophosphorylase
61	 34.03	0	77297..78730	+	477	71891854	hldE	BPEN_065	-	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase
62	 37.52	+1	79574..80218	+	214	71891855	ribB	BPEN_067	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
63	 30.35	0	80554..81291	+	245	71891856	plsC	BPEN_068	-	1-acyl-glycerol-3-phosphate acyltransferase
64	 33.42	0	81475..82662	-	395	71891857	metC	BPEN_069	-	beta-cystathionase
65	 32.39	0	84670..84987	-	105	71891858	cutA	BPEN_071	-	periplasmic divalent cation tolerance protein
66	 40.48	+2	85399..85692	+	97	71891859	groES	BPEN_072	-	co-chaperonin GroES
67	 39.38	+2	85742..87379	+	545	71891860	groEL	BPEN_073	-	chaperonin GroEL
68	 31.92	0	87508..88074	+	188	71891861	efp	BPEN_074	-	elongation factor P
69	 28.94	0	88088..91480	-	1130	71891862	yjeP	BPEN_075	-	hypothetical protein
70	 33.90	0	91537..92424	-	295	71891863	psd	BPEN_076	-	phosphatidylserine decarboxylase proenzyme
71	 32.62	0	93133..93696	+	187	71891864	orn	BPEN_077	-	oligoribonuclease
72	 32.52	0	94487..94975	+	162	71891865	yjeE	BPEN_079	-	nucleoside triP hydrolase domain-containing protein
73	 30.82	0	94972..96243	+	423	71891866	amiB	BPEN_080	-	N-acetylmuramoyl-L-alanine amidase
74	 31.69	0	96505..97419	+	304	71891867	miaA	BPEN_081	-	delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase
75	 32.11	0	97510..97755	+	81	71891868	hfq	BPEN_082	-	host factor I
76	 31.93	0	97918..99204	+	428	71891869	hflX	BPEN_083	-	hypothetical protein
77	 33.02	0	99260..100555	+	431	71891870	hflK	BPEN_084	-	HflK
78	 33.62	0	100556..101584	+	342	71891871	hflC	BPEN_085	-	FtsH protease regulator HflC
79	 35.41	+1	101746..103044	+	432	71891872	purA	BPEN_086	-	adenylosuccinate synthetase
80	 34.27	0	103280..104023	+	247	71891873	rlmB	BPEN_087	-	tRNA/rRNA methyltransferase
81	 30.23	0	104194..104547	+	117	71891874	rpsF	BPEN_088	-	30S ribosomal subunit protein S6
82	 36.25	+1	104772..105011	+	79	71891875	rpsR	BPEN_089	-	30S ribosomal protein S18
83	 30.74	0	105066..105527	+	153	71891876	rplI	BPEN_090	-	50S ribosomal protein L9
84	 32.94	0	105822..106577	+	251	71891877	cysQ	BPEN_091	-	CysQ
85	 29.27	0	106992..108754	+	587	71892399	ytfM	BPEN_092	-	putative outer membrane protein
86	 27.06	-1	108751..112590	+	1279	71891878	ytfN	BPEN_093	-	hypothetical protein
87	 29.78	0	112666..113199	-	177	71891879	ppa	BPEN_094	-	inorganic pyrophosphatase
88	 33.85	0	113396..114367	-	323	71891880	ispB	BPEN_095	-	octaprenyl-diphosphate synthase
89	 31.76	0	114559..114876	+	105	71891881	rplU	BPEN_096	-	50S ribosomal protein L21
90	 38.04	+1	114922..115176	+	84	71891882	rpmA	BPEN_097	-	50S ribosomal protein L27
91	 33.04	0	115536..116558	+	340	71891883	obgE	BPEN_098	-	GTPase ObgE
92	 33.75	0	116889..117365	+	158	71891884	greA	BPEN_099	-	transcription elongation factor
93	 36.52	+1	117742..118368	+	208	71891885	rrmJ	BPEN_100	-	ribosomal RNA large subunit (23S) methyltransferase J
94	 37.90	+1	118442..120370	+	642	71891886	hflB	BPEN_101	-	hypothetical protein
95	 35.24	+1	120501..121340	+	279	71891887	folP	BPEN_102	-	7,8-dihydropteroate synthase
96	 35.98	+1	121354..122715	+	453	71891888	mrsA	BPEN_103	-	PGM/PMM-family protein
97	 24.82	-2	122862..123143	+	93	71891889	secG	BPEN_104	-	preprotein translocase, membrane component
98	 33.27	0	124047..125564	+	505	71891890	nusA	BPEN_107	-	transcription elongation factor NusA
99	 34.19	0	125595..128270	+	891	71891891	infB	BPEN_108	-	translation initiation factor IF2-2
100	 29.17	0	128361..128720	+	119	71891892	rbfA	BPEN_109	-	30S ribosome-binding factor
31.96	MEAN

3.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.