IslandPath Analysis: Synechococcus sp. JA-3-3Ab



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.19   STD DEV: 4.44
Synechococcus sp. JA-3-3Ab, complete genome - 1..2932766
2760 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 57.19	0	71..1474	+	467	86604734	dnaA	CYA_0001	-	chromosomal replication initiation protein
2	 62.75	0	1645..2334	+	229	86604735	-	CYA_0003	-	hypothetical protein
3	 66.18	+1	2331..3152	-	273	86604736	-	CYA_0002	-	hypothetical protein
4	 62.53	0	3256..5142	-	628	86604737	-	CYA_0004	-	FtsH family metalloprotease
5	 64.73	+1	5268..6143	-	291	86604738	-	CYA_0005	-	short chain dehydrogenase/reductase family oxidoreductase
6	 56.14	0	6134..6247	+	37	86604739	-	CYA_0006	-	hypothetical protein
7	 60.96	0	6354..7019	+	221	86604740	-	CYA_0007	-	hypothetical protein
8	 64.82	+1	7057..9606	-	849	86604741	-	CYA_0008	-	type II DNA topoisomerase, A subunit
9	 61.97	0	9806..11209	+	467	86604742	-	CYA_0009	-	phosphoglucomutase/phosphomannomutase family protein
10	 58.52	0	11268..11660	-	130	86604743	-	CYA_0010	-	glyoxalase family protein
11	 56.65	0	11810..13177	-	455	86604744	thiC	CYA_0011	-	thiamine biosynthesis protein ThiC
12	 45.03	-2	13486..14220	-	244	86604745	-	CYA_0012	-	hypothetical protein
13	 65.59	+1	14217..14957	-	246	86604746	-	CYA_0013	-	hypothetical protein
14	 65.59	+1	14998..15462	-	154	86604747	-	CYA_0014	-	GUN4-like family protein
15	 56.82	0	15513..16040	-	175	86604748	-	CYA_0015	-	hypothetical protein
16	 62.61	0	16201..16965	-	254	86604749	gvpW	CYA_0016	-	gas vesicle protein W
17	 62.32	0	17166..17786	+	206	86604750	-	CYA_0018	-	hypothetical protein
18	 64.89	+1	17769..18500	-	243	86604751	surE	CYA_0017	-	stationary phase survival protein SurE
19	 62.60	0	18689..19720	+	343	86604752	gap-1	CYA_0020	-	glyceraldehyde-3-phosphate dehydrogenase, type I
20	 65.88	+1	19706..20212	-	168	86604753	folK	CYA_0019	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
21	 61.02	0	20219..20590	-	123	86604754	folB	CYA_0021	-	dihydroneopterin aldolase
22	 63.68	0	20577..21446	-	289	86604755	folP	CYA_0022	-	dihydropteroate synthase
23	 50.00	-2	21788..21895	-	35	86604756	-	CYA_0023	-	hypothetical protein
24	 60.99	0	22084..23175	-	363	86604757	-	CYA_0024	-	translation-associated GTPase
25	 62.51	0	23329..24723	-	464	86604758	rumA	CYA_0025	-	23S rRNA (uracil-5-)-methyltransferase RumA
26	 65.89	+1	24911..26074	-	387	86604759	-	CYA_0026	-	O-antigen polymerase family protein
27	 62.57	0	26202..26567	-	121	86604760	-	CYA_0027	-	ferredoxin, 2Fe-2S
28	 59.16	0	26693..27145	+	150	86604761	-	CYA_0028	-	putative mannose-6-phosphate isomerase
29	 61.38	0	27153..29534	-	793	86604762	-	CYA_0029	-	M48B family peptidase
30	 54.81	-1	29715..30161	-	148	86604763	-	CYA_0030	-	FUR family transcriptional regulator
31	 62.99	0	30488..30868	+	126	86604764	-	CYA_0031	-	hypothetical protein
32	 66.12	+1	30915..32189	+	424	86604765	-	CYA_0032	-	putative D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase
33	 59.94	0	32567..33220	+	217	86604766	-	CYA_0034	-	hypothetical protein
34	 56.69	0	33590..34060	+	156	86604767	psaL-1	CYA_0035	-	photosystem I reaction center protein subunit XI
35	 50.88	-2	34110..34223	+	37	86604768	psaI	CYA_0036	-	photosystem I reaction center subunit VIII
36	 46.62	-2	34557..34955	+	132	86604769	-	CYA_0037	-	ISSoc4, transposase orfA
37	 46.56	-2	34937..35488	+	183	86604770	-	CYA_0038	-	ISSoc4, transposase orfB
38	 62.78	0	35581..37047	-	488	86604771	-	CYA_0039	-	hypothetical protein
39	 61.86	0	37430..38884	+	484	86604772	-	CYA_0041	-	bacteriochlorophyll delivery (BCD) family transporter
40	 64.63	0	38881..39174	-	97	86604773	-	CYA_0040	-	hypothetical protein
41	 63.96	0	39584..41692	+	702	86604774	-	CYA_0042	-	WD domain-/G-beta repeat-containing protein
42	 63.51	0	41742..43040	+	432	86604775	-	CYA_0043	-	amine oxidase, flavin-containing
43	 56.10	0	43128..43799	+	223	86604776	-	CYA_0044	-	hypothetical protein
44	 56.10	0	43925..44719	+	264	86604777	-	CYA_0045	-	hypothetical protein
45	 62.62	0	44778..45890	-	370	86604778	trmU	CYA_0046	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
46	 63.35	0	45989..46711	-	240	86604779	-	CYA_0047	-	HEAT repeat-containing PBS lyase
47	 64.48	0	46915..47829	+	304	86604780	-	CYA_0048	-	hypothetical protein
48	 56.09	0	48013..48570	-	185	86604781	-	CYA_0049	-	hypothetical protein
49	 60.65	0	48908..49837	+	309	86604782	-	CYA_0050	-	TPR repeat-containing protein
50	 62.71	0	49892..51004	-	370	86604783	-	CYA_0051	-	oligopeptide ABC transporter, permease protein
51	 59.54	0	50663..51715	+	350	86604784	-	CYA_0054	-	hypothetical protein
52	 60.68	0	51170..51670	-	166	86604785	-	CYA_0052	-	hypothetical protein
53	 45.68	-2	51700..52647	-	315	86604786	-	CYA_0053	-	ISSoc4, transposase orfAB
54	 64.59	0	52802..53860	-	352	86604787	selD	CYA_0055	-	selenide, water dikinase
55	 54.68	-1	53979..57464	+	1161	86604788	dnaE	CYA_0057	-	DNA polymerase III subunit alpha
56	 66.30	+1	57450..57725	-	91	86604789	-	CYA_0056	-	glutaredoxin family protein
57	 63.16	0	57735..58562	-	275	86604790	-	CYA_0058	-	carbon-nitrogen family hydrolase
58	 59.91	0	58599..58820	-	73	86604791	-	CYA_0059	-	hypothetical protein
59	 64.25	0	59052..59795	-	247	86604792	-	CYA_0060	-	hypothetical protein
60	 58.08	0	59792..60373	-	193	86604793	-	CYA_0061	-	RNA polymerase sigma factor
61	 61.96	0	60603..61409	-	268	86604794	-	CYA_0062	-	putative lipoprotein
62	 57.26	0	61552..61668	-	38	86604795	-	CYA_0063	-	hypothetical protein
63	 58.75	0	61714..62496	-	260	86604796	-	CYA_0064	-	hypothetical protein
64	 58.20	0	62514..63257	-	247	86604797	-	CYA_0065	-	hypothetical protein
65	 59.47	0	63306..63791	-	161	86604798	-	CYA_0066	-	FHA domain-containing protein
66	 51.78	-1	65283..65759	+	158	86604799	-	CYA_0068	-	ISSoc3, orfA transposase
67	 60.75	0	66081..66722	+	213	86604800	-	CYA_0069	-	hypothetical protein
68	 62.74	0	66762..67652	+	296	86604801	-	CYA_0070	-	hypothetical protein
69	 59.79	0	68588..69808	+	406	86604802	chlP	CYA_0072	-	geranylgeranyl reductase
70	 60.40	0	69815..70660	-	281	86604803	-	CYA_0073	-	hypothetical protein
71	 61.84	0	71021..72367	+	448	86604804	secD	CYA_0074	-	preprotein translocase subunit SecD
72	 60.54	0	72364..73359	+	331	86604805	secF	CYA_0075	-	preprotein translocase subunit SecF
73	 67.01	+1	73398..75167	-	589	86604806	-	CYA_0076	-	hypothetical protein
74	 62.48	0	75903..77240	+	445	86604807	murF	CYA_0077	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase
75	 55.86	0	77338..77559	+	73	86604808	-	CYA_0078	-	hypothetical protein
76	 57.54	0	77913..78449	+	178	86604809	-	CYA_0079	-	fasciclin domain-containing protein
77	 57.94	0	78557..79003	-	148	86604810	-	CYA_0080	-	hypothetical protein
78	 64.83	+1	79112..80905	+	597	86604811	menD	CYA_0082	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
79	 64.71	+1	80829..81851	-	340	86604812	miaA	CYA_0081	-	tRNA delta(2)-isopentenylpyrophosphate transferase
80	 62.53	0	82003..82824	+	273	86604813	-	CYA_0083	-	hypothetical protein
81	 62.03	0	82982..83692	-	236	86604814	rpe	CYA_0084	-	ribulose-phosphate 3-epimerase
82	 60.22	0	83852..84037	-	61	86604815	-	CYA_0085	-	hypothetical protein
83	 63.99	0	84185..84595	+	136	86604816	-	CYA_0086	-	glyoxalase family protein
84	 66.67	+1	84592..86178	+	528	86604817	-	CYA_0088	-	carbohydrate kinase family protein
85	 62.94	0	86175..87005	-	276	86604818	-	CYA_0087	-	putative undecaprenol kinase
86	 61.84	0	87209..87829	-	206	86604819	-	CYA_0089	-	hypothetical protein
87	 53.23	-1	88002..88187	-	61	86604820	-	CYA_0090	-	hypothetical protein
88	 59.14	0	88306..89487	-	393	86604821	-	CYA_0091	-	ISSoc1, transposase
89	 59.45	0	89675..90367	-	230	86604822	-	CYA_0092	-	hypothetical protein
90	 55.56	-1	90367..91023	-	218	86604823	-	CYA_0093	-	response regulator
91	 59.96	0	91262..92380	+	372	86604824	-	CYA_0094	-	UbiE/COQ5 family methlytransferase
92	 60.40	0	92497..92991	+	164	86604825	-	CYA_0095	-	hypothetical protein
93	 59.13	0	93105..93449	+	114	86604826	-	CYA_0096	-	hypothetical protein
94	 63.97	0	93643..95199	+	518	86604827	-	CYA_0097	-	major facilitator transporter
95	 58.82	0	95249..95350	+	33	86604828	-	CYA_0098	-	hypothetical protein
96	 62.80	0	95382..96572	+	396	86604829	-	CYA_0099	-	glycosyl transferase, group 1
97	 61.92	0	96917..98413	+	498	86604830	-	CYA_0100	-	GAF/SpoIIE domain-containing protein
98	 57.53	0	98507..98725	+	72	86604831	-	CYA_0102	-	hypothetical protein
99	 61.11	0	98709..98816	-	35	86604832	-	CYA_0101	-	hypothetical protein
100	 62.65	0	98857..100326	+	489	86604833	argH	CYA_0103	-	argininosuccinate lyase
60.19	MEAN

4.44	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.