IslandPath Analysis: Carboxydothermus hydrogenoformans Z-2901



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.28   STD DEV: 5.58
Carboxydothermus hydrogenoformans Z-2901, complete genome - 1..2401520
2620 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 46.67	0	225..359	+	44	78043997	rpmH	CHY_0001	-	50S ribosomal protein L34
2	 32.76	-1	426..776	+	116	78045102	rnpA	CHY_0002	-	ribonuclease P protein component
3	 39.47	0	769..996	+	75	78043459	-	CHY_0003	-	hypothetical protein
4	 36.76	0	1004..1675	+	223	78043134	-	CHY_0004	-	sporulation associated-membrane protein
5	 42.19	0	1662..2282	+	206	78045166	jag	CHY_0005	-	jag protein
6	 40.55	0	2359..3744	+	461	78044593	trmE	CHY_0006	-	tRNA modification GTPase TrmE
7	 43.99	0	3754..5649	+	631	78043339	gidA1	CHY_0007	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
8	 41.10	0	5633..6340	+	235	78044839	gidB	CHY_0008	-	glucose-inhibited division protein B
9	 44.05	0	6483..7247	+	254	78043660	soj	CHY_0009	-	sporulation initiation inhibitor protein soj
10	 43.90	0	7237..8097	+	286	78043063	-	CHY_0010	-	stage 0 sporulation protein J
11	 48.35	+1	8127..9278	+	383	78044965	-	CHY_0011	-	cysteine desulfurase family protein
12	 47.97	+1	9471..10502	+	343	78043356	-	CHY_0012	-	hypothetical protein
13	 47.87	+1	10537..11430	+	297	78044734	-	CHY_0013	-	LysR family transcriptional regulator
14	 43.36	0	11478..12644	-	388	78042797	-	CHY_0014	-	hypothetical protein
15	 46.45	0	12646..13392	-	248	78043590	-	CHY_0015	-	hypothetical protein
16	 44.28	0	13393..14196	-	267	78043673	-	CHY_0016	-	hypothetical protein
17	 38.99	0	14277..14771	+	164	78043587	-	CHY_0017	-	hypothetical protein
18	 41.00	0	14773..15411	+	212	78042838	-	CHY_0018	-	phosphoribosyl transferase domain-containing protein
19	 43.88	0	15458..15694	+	78	78044281	-	CHY_0019	-	hypothetical protein
20	 40.10	0	15615..16205	-	196	78043277	-	CHY_0020	-	hypothetical protein
21	 37.11	0	16298..17302	+	334	78044479	-	CHY_0021	-	hypothetical protein
22	 36.05	0	17312..17863	+	183	78045219	-	CHY_0022	-	hypothetical protein
23	 42.46	0	17854..19245	+	463	78043016	-	CHY_0023	-	putative aminopeptidase 1
24	 47.00	+1	19380..19796	+	138	78045022	-	CHY_0024	-	hypothetical protein
25	 42.40	0	19798..20679	-	293	78045025	-	CHY_0025	-	hypothetical protein
26	 36.53	0	20666..21478	-	270	78042960	-	CHY_0026	-	putative DNA ligase, ATP-dependent
27	 38.80	0	21494..22279	-	261	78043847	-	CHY_0027	-	KU domain-containing protein
28	 21.30	-2	22346..22453	-	35	78044067	-	CHY_0028	-	hypothetical protein
29	 45.13	0	22437..23648	+	403	78044623	-	CHY_0029	-	putative inner membrane protein
30	 48.29	+1	23650..23883	+	77	78044446	-	CHY_0030	-	hypothetical protein
31	 48.85	+1	23931..25019	-	362	78044617	ychF	CHY_0031	-	translation-associated GTPase
32	 39.80	0	25089..25289	-	66	78043835	-	CHY_0032	-	hypothetical protein
33	 43.04	0	25282..26136	-	284	78045203	-	CHY_0033	-	mechanosensitive ion channel family protein
34	 48.36	+1	26291..28180	-	629	78043206	cooSV	CHY_0034	-	carbon-monoxide dehydrogenase, catalytic subunit
35	 43.64	0	28352..28642	+	96	78042831	rpsF	CHY_0035	-	30S ribosomal protein S6
36	 48.15	+1	28661..29092	+	143	78044015	-	CHY_0036	-	single-strand binding protein
37	 45.02	0	29111..29341	+	76	78043292	rpsR	CHY_0037	-	30S ribosomal protein S18
38	 42.42	0	29465..30454	+	329	78044007	-	CHY_0038	-	hypothetical protein
39	 38.60	0	30426..30881	+	151	78043341	rplI	CHY_0039	-	ribosomal protein L9
40	 47.45	+1	30884..32782	+	632	78043822	-	CHY_0040	-	putative ATP-dependent protease La
41	 46.32	0	32795..34126	+	443	78043236	dnaB	CHY_0041	-	replicative DNA helicase
42	 43.89	0	34295..34957	+	220	78044629	-	CHY_0042	-	hypothetical protein
43	 48.20	+1	35012..36067	+	351	78044081	-	CHY_0043	-	putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit
44	 48.12	+1	36081..36824	+	247	78043364	-	CHY_0044	-	putative keto/oxoacid ferredoxin oxidoreductase, beta subunit
45	 49.29	+1	36827..37390	+	187	78043393	-	CHY_0045	-	putative keto/oxoacid ferredoxin oxidoreductase, gamma subunit
46	 53.16	+2	37406..37642	+	78	78044911	-	CHY_0046	-	putative keto/oxoacid ferredoxin oxidoreductase, delta subunit
47	 45.81	0	37724..39238	-	504	78042679	-	CHY_0047	-	serine protease
48	 38.16	0	39312..39518	+	68	78044185	-	CHY_0048	-	hypothetical protein
49	 44.02	0	39554..40882	+	442	78045175	cad	CHY_0049	-	lysine decarboxylase
50	 45.42	0	40882..41493	+	203	78044441	tmk	CHY_0050	-	thymidylate kinase
51	 41.42	0	41486..42289	+	267	78043743	-	CHY_0051	-	putative DNA polymerase III, delta prime subunit
52	 45.82	0	42345..43193	+	282	78042958	-	CHY_0052	-	putative tpl protein
53	 44.54	0	43159..43524	+	121	78042983	-	CHY_0053	-	hypothetical protein
54	 47.87	+1	43493..44242	+	249	78043617	-	CHY_0054	-	hypothetical protein
55	 46.17	0	44242..45051	+	269	78043091	-	CHY_0055	-	hypothetical protein
56	 46.92	+1	45171..46046	+	291	78043675	-	CHY_0056	-	putative osmotically inducible protein
57	 44.56	0	46164..47276	+	370	78044578	-	CHY_0057	-	putative serine protease Do
58	 43.33	0	47337..47816	+	159	78045158	-	CHY_0058	-	hypothetical protein
59	 34.98	-1	48186..49094	-	302	78042746	-	CHY_0059	-	LysR family transcriptional regulator
60	 40.54	0	49465..50865	+	466	78043316	-	CHY_0060	-	anion transporter family protein
61	 39.36	0	50977..51822	+	281	78044230	-	CHY_0061	-	fumarate hydratase
62	 40.90	0	51846..52400	+	184	78043076	-	CHY_0062	-	fumarate hydratase
63	 41.11	0	52405..54114	+	569	78044723	frdA	CHY_0063	-	fumarate reductase, flavoprotein subunit
64	 40.36	0	54115..55068	+	317	78044013	frdB1	CHY_0064	-	fumarate reductase, iron-sulfur subunit
65	 40.28	0	55194..56057	+	287	78043435	-	CHY_0065	-	putative succinate/fumarate oxidoreductase
66	 39.94	0	56176..57432	+	418	78043041	-	CHY_0066	-	hypothetical protein
67	 43.74	0	57665..58933	+	422	78044497	dsdA	CHY_0067	-	D-serine dehydratase
68	 38.40	0	59035..60396	+	453	78044612	-	CHY_0068	-	sodium transporter family protein
69	 34.22	-1	60721..61173	+	150	78044032	-	CHY_0069	-	nucleotidyltransferase domain-containing protein
70	 29.89	-2	61166..61600	+	144	78043071	-	CHY_0070	-	hypothetical protein
71	 43.09	0	61752..61874	+	40	78043490	-	CHY_0071	-	hypothetical protein
72	 43.53	0	61861..62223	+	120	78042932	glnB	CHY_0072	-	nitrogen regulatory protein P-II
73	 44.87	0	62220..63536	+	438	78044978	amt	CHY_0073	-	ammonium transporter
74	 41.03	0	63684..64853	+	389	78043610	-	CHY_0074	-	EAL domain-containing protein
75	 46.67	0	64901..66355	-	484	78043036	-	CHY_0075	-	amino acid carrier protein
76	 42.83	0	66711..67805	+	364	78045094	-	CHY_0076	-	PfkB family kinase
77	 45.25	0	67802..68716	+	304	78044666	-	CHY_0077	-	indigoidine systhesis protein,-like protein
78	 36.99	0	68796..69260	+	154	78043315	-	CHY_0078	-	hypothetical protein
79	 39.24	0	69282..70094	+	270	78042827	-	CHY_0079	-	amidohydrolase family protein
80	 35.43	-1	70160..70588	+	142	78044920	-	CHY_0080	-	nucleotidyltransferase domain-containing protein
81	 25.71	-2	70715..70819	+	34	78044342	-	CHY_0081	-	hypothetical protein
82	 46.89	+1	70812..71261	+	149	78042741	-	CHY_0082	-	universal stress family protein
83	 41.09	0	71306..71692	-	128	78043278	-	CHY_0083	-	putative carbon monoxide oxidation system transcription regulator CooA-2
84	 40.48	0	71950..72117	-	55	78044922	-	CHY_0084	-	hypothetical protein
85	 51.23	+1	72111..74021	-	636	78044574	cooSII	CHY_0085	-	carbon-monoxide dehydrogenase, catalytic subunit
86	 41.15	0	74040..74474	-	144	78045112	cooF1	CHY_0086	-	iron-sulfur cluster-binding protein CooF
87	 25.64	-2	74633..74749	-	38	78044551	-	CHY_0087	-	hypothetical protein
88	 43.32	0	74861..76042	+	393	78044152	-	CHY_0088	-	RND family efflux transporter MFP subunit
89	 43.29	0	76039..76731	+	230	78043038	-	CHY_0089	-	ABC transporter, ATP-binding protein
90	 43.06	0	76742..77944	+	400	78042731	-	CHY_0090	-	ABC transporter, permease protein
91	 39.23	0	77959..79416	+	485	78043258	-	CHY_0091	-	sensor histidine kinase
92	 44.26	0	79413..80117	+	234	78045188	-	CHY_0092	-	DNA-binding response regulator
93	 41.24	0	80149..80325	-	58	78043357	-	CHY_0093	-	hypothetical protein
94	 44.55	0	80332..81240	-	302	78043294	-	CHY_0094	-	SPFH domain-containing protein/band 7 family protein
95	 46.63	0	81616..82743	-	375	78042752	-	CHY_0095	-	iron-sulfur cluster-binding protein
96	 29.03	-2	82826..82918	-	30	78042650	-	CHY_0096	-	hypothetical protein
97	 40.00	0	82973..83872	+	299	78043821	-	CHY_0097	-	radical SAM domain-containing protein
98	 44.06	0	83978..85198	+	406	78042642	-	CHY_0098	-	putative transporter
99	 44.64	0	85120..86331	+	403	78044996	-	CHY_0099	-	putative methylase
100	 30.97	-1	86372..87769	+	465	78044501	-	CHY_0100	-	ATP-binding protein
41.28	MEAN

5.58	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.