IslandPath Analysis: Streptococcus thermophilus LMD-9



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.31   STD DEV: 4.08
Streptococcus thermophilus LMD-9, complete genome - 1..1856368
1710 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.85	0	101..1465	+	454	116626973	dnaA	STER_0001	-	chromosomal replication initiation protein
2	 35.36	0	1620..2756	+	378	116626974	-	STER_0002	-	DNA polymerase III subunit beta
3	 39.70	0	2825..4081	-	418	116626975	-	STER_0003	-	transposase
4	 35.42	0	4226..4417	+	63	116626976	-	STER_0004	-	hypothetical protein
5	 41.49	0	4630..5745	+	371	116626977	-	STER_0005	-	translation-associated GTPase
6	 36.67	0	5818..6387	+	189	116626978	-	STER_0006	-	peptidyl-tRNA hydrolase
7	 38.24	0	6380..9886	+	1168	116626979	-	STER_0007	-	transcription-repair coupling factor
8	 34.78	-1	10072..10347	+	91	116626980	-	STER_0008	-	S4 domain-containing protein
9	 37.10	0	10331..10702	+	123	116626981	-	STER_0009	-	cell-cycle protein, MesJ/Ycf62 family, putative
10	 33.33	-1	10702..10833	+	43	116626982	-	STER_0010	-	hypothetical protein
11	 36.58	0	10830..12122	+	430	116626983	-	STER_0011	-	hypothetical protein
12	 37.20	0	12122..13387	+	421	116626984	-	STER_0012	-	putative cell-cycle protein, MesJ/Ycf62 family
13	 36.28	0	13469..14011	+	180	116626985	-	STER_0013	-	hypoxanthine-guanine phosphoribosyltransferase
14	 39.99	0	14027..15994	+	655	116626986	-	STER_0014	-	cell division protein
15	 37.44	0	16037..16936	-	299	116626987	-	STER_0015	-	transposase
16	 37.24	0	17393..17929	+	178	116626988	-	STER_0016	-	transposase
17	 35.38	0	18257..18745	+	162	116626989	-	STER_0018	-	transposase
18	 31.77	-1	25595..26425	+	276	116626990	-	STER_0040	-	rod shape-determining protein MreC
19	 28.19	-2	26427..26951	+	174	116626991	-	STER_0041	-	rod shape-determining protein MreD
20	 42.25	0	27036..28403	+	455	116626992	-	STER_0042	-	glucan binding protein
21	 38.30	0	28617..29582	+	321	116626993	-	STER_0043	-	ribose-phosphate pyrophosphokinase
22	 38.10	0	30689..31864	+	391	116626994	-	STER_0045	-	aromatic amino acid aminotransferase
23	 35.27	0	31851..32624	+	257	116626995	recO	STER_0046	-	DNA repair protein RecO
24	 43.08	0	32842..33846	+	334	116626996	-	STER_0047	-	putative glycerol-3-phosphate acyltransferase PlsX
25	 33.33	-1	33846..34091	+	81	116626997	-	STER_0048	-	acyl carrier protein
26	 37.57	0	34376..35083	+	235	116626998	-	STER_0049	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
27	 41.98	0	35139..38864	+	1241	116626999	-	STER_0050	-	phosphoribosylformylglycinamidine synthase II (FGAM synthetase)
28	 42.92	0	39033..40472	+	479	116627000	-	STER_0051	-	amidophosphoribosyltransferase
29	 43.82	+1	40503..41522	+	339	116627001	-	STER_0052	-	phosphoribosylaminoimidazole synthetase
30	 45.77	+1	41522..42076	+	184	116627002	purN	STER_0053	-	phosphoribosylglycinamide formyltransferase
31	 45.41	+1	42145..43692	+	515	116627003	purH	STER_0054	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
32	 36.03	0	43864..44382	+	172	116627004	-	STER_0055	-	IS861, transposase (orf1), IS3 family, truncated
33	 46.07	+1	45089..45928	-	279	116627005	-	STER_0057	-	cell wall protein precursor, choline binding protein
34	 47.51	+2	46237..47499	+	420	116627006	-	STER_0058	-	phosphoribosylamine--glycine ligase
35	 49.10	+2	47833..48333	+	166	116627007	-	STER_0059	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
36	 46.25	+1	48320..49411	+	363	116627008	-	STER_0060	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
37	 31.67	-1	50368..50427	+	19	116627009	-	STER_0062	-	hypothetical protein
38	 35.76	0	50431..50595	+	54	116627010	-	STER_0063	-	hypothetical protein
39	 45.19	+1	50874..52172	+	432	116627011	-	STER_0064	-	adenylosuccinate lyase
40	 43.62	+1	53036..54727	-	563	116627012	argS	STER_0065	-	arginyl-tRNA synthetase
41	 42.25	0	54885..55310	+	141	116627013	-	STER_0066	-	arginine repressor
42	 43.06	0	55310..55669	+	119	116627014	-	STER_0067	-	hypothetical protein
43	 42.56	0	55662..58220	+	852	116627015	-	STER_0068	-	DNA mismatch repair protein
44	 42.54	0	58254..58709	-	151	116627016	-	STER_0069	-	hypothetical protein
45	 41.07	0	58723..59097	-	124	116627017	-	STER_0070	-	response regulator
46	 34.69	-1	59333..59626	+	97	116627018	-	STER_0071	-	hypothetical protein
47	 41.20	0	59678..61621	+	647	116627019	mutL	STER_0072	-	DNA mismatch repair protein
48	 32.88	-1	61751..61972	+	73	116627020	-	STER_0073	-	hypothetical protein
49	 38.92	0	62124..62714	+	196	116627021	ruvA	STER_0074	-	Holliday junction DNA helicase motor protein
50	 36.58	0	62721..63275	+	184	116627022	-	STER_0075	-	3-methyladenine DNA glycosylase
51	 40.09	0	63371..64642	+	423	116627023	-	STER_0076	-	competence damage-inducible protein A
52	 40.88	0	64678..65817	+	379	116627024	recA	STER_0077	-	recombinase A
53	 32.83	-1	65994..66392	+	132	116627025	spxA	STER_0078	-	transcriptional regulator Spx
54	 39.25	0	72798..77192	+	1464	116627026	polC	STER_0095	-	DNA polymerase III PolC
55	 42.35	0	77356..78597	+	413	116627027	-	STER_0096	-	aminopeptidase PepS
56	 39.39	0	78617..78847	+	76	116627028	-	STER_0097	-	hypothetical protein
57	 37.93	0	78980..79066	+	28	116627029	-	STER_0098	-	hypothetical protein
58	 37.86	0	79497..80048	+	183	116627030	-	STER_0100	-	hypothetical protein
59	 36.40	0	80098..80586	-	162	116627031	-	STER_0101	-	transposase
60	 41.41	0	82956..83723	+	255	116627032	rpsB	STER_0105	-	30S ribosomal protein S2
61	 40.63	0	83841..84881	+	346	116627033	tsf	STER_0106	-	elongation factor Ts
62	 46.28	+1	84991..85461	-	156	116627034	-	STER_0107	-	hypothetical protein
63	 39.69	0	85705..86160	+	151	116627035	-	STER_0108	-	class III stress gene transcriptional regulator
64	 42.47	0	86161..88611	+	816	116627036	-	STER_0109	-	ATP-dependent Clp protease, ATP-binding subunit
65	 40.47	0	90195..90881	+	228	116627037	-	STER_0111	-	transposase
66	 40.11	0	90896..91765	+	289	116627038	-	STER_0112	-	transposase
67	 40.43	0	91828..93081	-	417	116627039	-	STER_0113	-	D-alanyl-D-alanine carboxypeptidase, penicillin-binding protein
68	 43.49	+1	93284..95509	+	741	116627040	-	STER_0114	-	polynucleotide phosphorylase/polyadenylase
69	 41.12	0	95518..96288	+	256	116627041	-	STER_0115	-	hypothetical protein
70	 45.09	+1	96361..96981	+	206	116627042	-	STER_0116	-	serine acetyltransferase
71	 40.48	0	97363..98706	+	447	116627043	cysS	STER_0117	-	cysteinyl-tRNA synthetase
72	 40.55	0	98699..99100	+	133	116627044	-	STER_0118	-	hypothetical protein
73	 32.69	-1	99382..99537	+	51	116627045	-	STER_0119	-	hypothetical protein
74	 46.03	+1	99613..99801	+	62	116627046	-	STER_0120	-	hypothetical protein
75	 39.51	0	99872..100114	+	80	116627047	-	STER_0121	-	hypothetical protein
76	 42.74	0	100162..100905	+	247	116627048	-	STER_0122	-	tRNA/rRNA methyltransferase
77	 40.62	0	100944..101423	+	159	116627049	-	STER_0123	-	RNA-binding protein
78	 42.28	0	101432..102292	+	286	116627050	-	STER_0124	-	hypothetical protein
79	 33.33	-1	102593..103093	+	166	116627051	-	STER_0125	-	hypothetical protein
80	 38.56	0	103241..104197	+	318	116627052	-	STER_0126	-	2-dehydropantoate 2-reductase
81	 40.94	0	104406..104852	+	148	116627053	rplM	STER_0127	-	50S ribosomal protein L13
82	 45.80	+1	104880..105272	+	130	116627054	rpsI	STER_0128	-	30S ribosomal protein S9
83	 33.33	-1	106260..106364	+	34	116627055	-	STER_0130	-	hypothetical protein
84	 31.99	-1	106407..108122	+	571	116627056	-	STER_0131	-	hypothetical protein
85	 29.43	-2	109965..110810	+	281	116627057	-	STER_0134	-	hypothetical protein
86	 30.95	-2	110820..110987	+	55	116627058	-	STER_0135	-	hypothetical protein
87	 35.67	0	111038..111550	+	170	116627059	-	STER_0136	-	transcription regulator
88	 31.43	-1	111672..111776	+	34	116627060	-	STER_0137	-	hypothetical protein
89	 39.06	0	111876..113132	-	418	116627061	-	STER_0138	-	transposase
90	 38.91	0	113500..114180	-	226	116627062	-	STER_0139	-	transposase
91	 23.98	-2	114897..115067	+	56	116627063	-	STER_0141	-	hypothetical protein
92	 36.84	0	115091..116746	+	551	116627064	-	STER_0142	-	ABC-type oligopeptide transport system, periplasmic component
93	 39.38	0	116849..117907	+	352	116627065	-	STER_0143	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
94	 41.61	0	117907..118860	+	317	116627066	-	STER_0144	-	ABC-type dipeptide/oligopeptide/nickel transport system, permease component
95	 40.28	0	118857..120554	+	565	116627067	-	STER_0145	-	ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
96	 35.86	0	121047..121997	+	316	116627068	-	STER_0147	-	IS5 family transposase
97	 39.21	0	121994..122674	-	226	116627069	-	STER_0148	-	transposase
98	 34.76	-1	122832..124025	-	397	116627070	-	STER_0149	-	cell wall biosynthesis glycosyltransferase
99	 37.00	0	124093..125211	-	372	116627071	-	STER_0150	-	UDP-glucose 6-dehydrogenase
100	 39.54	0	125383..126639	+	418	116627072	-	STER_0151	-	transposase
39.31	MEAN

4.08	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.