IslandPath Analysis: Salinispora arenicola CNS-205



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 69.55   STD DEV: 3.52
Salinispora arenicola CNS-205, complete genome - 1..5786361
4917 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.86	0	148..1923	+	591	159035675	-	Sare_0001	-	chromosomal replication initiator protein DnaA
2	 70.11	0	2705..3838	+	377	159035676	-	Sare_0002	-	DNA polymerase III, beta subunit
3	 69.30	0	3877..4749	+	290	159035677	-	Sare_0003	-	6-phosphogluconate dehydrogenase-like protein
4	 72.59	0	4766..5896	+	376	159035678	-	Sare_0004	-	recombination protein F
5	 77.06	+2	5889..6494	+	201	159035679	-	Sare_0005	-	hypothetical protein
6	 68.73	0	6485..7066	-	193	159035680	-	Sare_0006	-	hypothetical protein
7	 65.13	-1	7563..9509	+	648	159035681	-	Sare_0007	-	DNA gyrase, B subunit
8	 66.79	0	9641..12160	+	839	159035682	-	Sare_0008	-	DNA gyrase subunit A
9	 71.95	0	12165..13073	+	302	159035683	-	Sare_0009	-	hypothetical protein
10	 66.83	0	14087..15292	+	401	159035684	-	Sare_0010	-	XRE family transcriptional regulator
11	 74.44	+1	15477..15656	+	59	159035685	-	Sare_0011	-	hypothetical protein
12	 70.51	0	15656..15889	+	77	159035686	-	Sare_0012	-	hypothetical protein
13	 68.81	0	16357..16869	+	170	159035687	-	Sare_0013	-	hypothetical protein
14	 67.72	0	17038..17418	+	126	159035688	-	Sare_0014	-	hypothetical protein
15	 68.16	0	17613..17879	-	88	159035689	-	Sare_0015	-	regulator of chromosome condensation, RCC1
16	 70.63	0	18032..18661	-	209	159035690	-	Sare_0016	-	regulator of chromosome condensation, RCC1
17	 65.12	-1	19079..20239	-	386	159035691	-	Sare_0017	-	hemolysin-type calcium-binding region
18	 63.57	-1	20879..21007	+	42	159035692	-	Sare_0018	-	hypothetical protein
19	 68.48	0	21409..23997	-	862	159035693	-	Sare_0019	-	valyl-tRNA synthetase
20	 73.38	+1	24135..25088	+	317	159035694	-	Sare_0020	-	Sua5/YciO/YrdC/YwlC family protein
21	 73.83	+1	25147..29685	-	1512	159035695	-	Sare_0021	-	ATPase, P-type (transporting), HAD superfamily, subfamily IC
22	 63.84	-1	29847..30164	+	105	159035696	-	Sare_0022	-	hypothetical protein
23	 65.64	-1	30307..30501	+	64	159035697	-	Sare_0023	-	hypothetical protein
24	 72.17	0	30588..31223	-	211	159035698	-	Sare_0024	-	DSBA oxidoreductase
25	 69.76	0	31244..31663	-	139	159035699	-	Sare_0025	-	Fe-S metabolism associated SufE
26	 68.08	0	31823..32248	-	141	159035700	-	Sare_0026	-	CBS domain-containing protein
27	 70.70	0	32505..33272	+	255	159035701	-	Sare_0027	-	GDSL family lipase
28	 70.47	0	33356..34249	+	297	159035702	-	Sare_0028	-	rhodanese domain-containing protein
29	 71.36	0	34333..35568	-	411	159035703	-	Sare_0029	-	peptidase S8 and S53 subtilisin kexin sedolisin
30	 71.13	0	35894..36475	+	193	159035704	-	Sare_0030	-	TetR family transcriptional regulator
31	 70.03	0	36598..37935	+	445	159035705	-	Sare_0031	-	carbamoyl-phosphate synthase L chain ATP-binding
32	 71.38	0	38129..39040	+	303	159035706	-	Sare_0032	-	pyruvate carboxyltransferase
33	 67.97	0	39238..40770	+	510	159035707	-	Sare_0033	-	propionyl-CoA carboxylase
34	 66.75	0	40828..41982	+	384	159035708	-	Sare_0034	-	acyl-CoA dehydrogenase domain-containing protein
35	 74.12	+1	42110..44671	+	853	159035709	-	Sare_0035	-	XRE family transcriptional regulator
36	 72.12	0	45043..45207	-	54	159035710	-	Sare_0036	-	hypothetical protein
37	 67.68	0	45370..46848	+	492	159035711	-	Sare_0037	-	hypothetical protein
38	 74.39	+1	46934..48370	-	478	159035712	-	Sare_0038	-	hypothetical protein
39	 69.59	0	48473..48883	-	136	159035713	-	Sare_0039	-	hypothetical protein
40	 67.71	0	48987..49274	-	95	159035714	-	Sare_0040	-	hypothetical protein
41	 62.70	-1	49693..50574	+	293	159035715	-	Sare_0041	-	XRE family transcriptional regulator
42	 68.02	0	50544..50765	+	73	159035716	-	Sare_0042	-	hypothetical protein
43	 70.37	0	50962..51366	+	134	159035717	-	Sare_0043	-	hypothetical protein
44	 68.27	0	51562..53118	+	518	159035718	-	Sare_0044	-	peptidase S8 and S53 subtilisin kexin sedolisin
45	 69.03	0	53191..53994	-	267	159035719	-	Sare_0045	-	WecB/TagA/CpsF family glycosyl transferase
46	 64.53	-1	53991..55064	-	357	159035720	-	Sare_0046	-	NAD-dependent epimerase/dehydratase
47	 69.16	0	55506..56267	+	253	159035721	-	Sare_0047	-	FHA domain-containing protein
48	 67.90	0	56274..56759	+	161	159035722	-	Sare_0048	-	FHA domain-containing protein
49	 70.91	0	56756..58192	+	478	159035723	-	Sare_0049	-	protein serine/threonine phosphatase
50	 69.01	0	58221..59711	+	496	159035724	-	Sare_0050	-	cell cycle protein
51	 67.86	0	59708..61219	+	503	159035725	-	Sare_0051	-	peptidoglycan glycosyltransferase
52	 72.41	0	61221..62648	+	475	159035726	-	Sare_0052	-	serine/threonine protein kinase
53	 69.81	0	62645..64456	+	603	159035727	-	Sare_0053	-	serine/threonine protein kinase with PASTA sensor(s)
54	 68.51	0	64501..65151	-	216	159035728	-	Sare_0054	-	para-aminobenzoate synthase component II
55	 70.18	0	65155..65439	-	94	159035729	-	Sare_0055	-	hypothetical protein
56	 71.63	0	65444..67114	-	556	159035730	-	Sare_0056	-	sortase family protein
57	 70.40	0	67111..67914	-	267	159035731	-	Sare_0057	-	hypothetical protein
58	 67.05	0	68100..68363	+	87	159035732	-	Sare_0058	-	hypothetical protein
59	 67.50	0	68671..70827	+	718	159035733	-	Sare_0059	-	hypothetical protein
60	 65.38	-1	71210..72223	+	337	159035734	-	Sare_0060	-	NLP/P60 protein
61	 66.67	0	72345..72923	-	192	159035735	-	Sare_0061	-	deoxycytidine triphosphate deaminase
62	 71.54	0	73001..73534	+	177	159035736	-	Sare_0062	-	pyridoxamine 5'-phosphate oxidase-related FMN-binding
63	 67.36	0	73610..74614	-	334	159035737	-	Sare_0063	-	hypothetical protein
64	 74.50	+1	75029..75577	-	182	159035738	-	Sare_0064	-	hypothetical protein
65	 67.80	0	76641..77435	-	264	159035739	-	Sare_0065	-	Zn-dependent hydrolase of the beta-lactamase fold-like protein
66	 69.17	0	77525..78124	+	199	159035740	-	Sare_0066	-	hypothetical protein
67	 65.83	-1	78756..79595	+	279	159035741	-	Sare_0067	-	methylenetetrahydrofolate dehydrogenase (NADP(+))
68	 68.04	0	79903..80340	-	145	159035742	-	Sare_0068	-	hypothetical protein
69	 71.03	0	80497..81000	+	167	159035743	-	Sare_0069	-	hypothetical protein
70	 69.88	0	81072..81755	+	227	159035744	-	Sare_0070	-	cyclic nucleotide-binding protein
71	 65.84	-1	83114..83716	-	200	159035745	-	Sare_0072	-	hypothetical protein
72	 65.17	-1	84240..84572	+	110	159035746	-	Sare_0073	-	ArsR family transcriptional regulator
73	 70.61	0	84865..86082	+	405	159035747	-	Sare_0074	-	FAD dependent oxidoreductase
74	 65.82	-1	86607..89450	+	947	159035748	-	Sare_0075	-	peptidase M28
75	 65.33	-1	89708..90382	-	224	159035749	-	Sare_0076	-	two component transcriptional regulator
76	 68.62	0	90861..91730	-	289	159035750	-	Sare_0077	-	alpha/beta hydrolase fold
77	 68.53	0	91940..93550	-	536	159035751	-	Sare_0078	-	major facilitator transporter
78	 70.70	0	93741..94757	+	338	159035752	-	Sare_0079	-	RNA polymerase factor sigma-70
79	 65.23	-1	94729..95007	+	92	159035753	-	Sare_0080	-	hypothetical protein
80	 66.24	0	94988..95458	+	156	159035754	-	Sare_0081	-	GCN5-related N-acetyltransferase
81	 69.36	0	95530..96420	+	296	159035755	-	Sare_0082	-	luciferase family protein
82	 72.46	0	96426..96977	-	183	159035756	-	Sare_0083	-	phosphoribosyltransferase
83	 73.21	+1	97223..97864	+	213	159035757	-	Sare_0084	-	rare lipoprotein A
84	 71.72	0	97965..99092	+	375	159035758	-	Sare_0085	-	protein serine/threonine phosphatase
85	 67.48	0	99175..101028	+	617	159035759	-	Sare_0086	-	acyl-CoA dehydrogenase domain-containing protein
86	 68.15	0	101213..101482	+	89	159035760	-	Sare_0087	-	hypothetical protein
87	 72.22	0	101564..102193	-	209	159035761	-	Sare_0088	-	putative phosphohistidine phosphatase, SixA
88	 68.58	0	102219..103157	-	312	159035762	-	Sare_0089	-	AraC family transcriptional regulator
89	 70.20	0	103264..103971	+	235	159035763	-	Sare_0090	-	ThiJ/PfpI domain-containing protein
90	 66.88	0	103968..104444	+	158	159035764	-	Sare_0091	-	hypothetical protein
91	 67.02	0	104441..104722	+	93	159035765	-	Sare_0092	-	hypothetical protein
92	 68.14	0	104846..105523	-	225	159035766	-	Sare_0093	-	hemolysin III family channel protein
93	 73.25	+1	105786..106529	+	247	159035767	-	Sare_0094	-	allophanate hydrolase subunit 1
94	 74.79	+1	106526..107461	+	311	159035768	-	Sare_0095	-	urea amidolyase related protein
95	 72.00	0	107445..108194	+	249	159035769	-	Sare_0096	-	LamB/YcsF family protein
96	 71.78	0	108238..110076	-	612	159035770	-	Sare_0097	-	alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen
97	 66.93	0	111087..111854	+	255	159035771	-	Sare_0098	-	hypothetical protein
98	 71.35	0	111845..112036	+	63	159035772	-	Sare_0099	-	hypothetical protein
99	 69.84	0	112116..112304	+	62	159035773	-	Sare_0100	-	hypothetical protein
100	 69.72	0	112301..113086	-	261	159035774	-	Sare_0101	-	beta-lactamase domain-containing protein
69.55	MEAN

3.52	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.