IslandPath Analysis: Leptospira borgpetersenii serovar Hardjo-bovis JB197



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No RNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 41.05   STD DEV: 2.74
Leptospira borgpetersenii serovar Hardjo-bovis JB197 chromosome 2, complete sequence - 1..299762
235 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.92	-1	139..891	+	250	116332446	-	LBJ_4000	-	ParA-like protein
2	 35.34	-2	875..1720	+	281	116332447	-	LBJ_4001	-	ParB-like protein
3	 39.39	0	2098..2988	+	296	116332448	-	LBJ_4002	-	hypothetical protein
4	 46.18	+1	3014..5527	+	837	116332449	-	LBJ_4003	-	hypothetical protein
5	 40.44	0	5538..6410	+	290	116332450	metF	LBJ_4004	-	5,10-methylenetetrahydrofolate reductase
6	 41.21	0	6766..7590	-	274	116332451	-	LBJ_4005	-	hypothetical protein
7	 42.16	0	7901..8761	+	286	116332452	-	LBJ_4006	-	HAD family phosphatase
8	 38.25	-1	8732..9016	-	94	116332453	-	LBJ_4007	-	hypothetical protein
9	 42.01	0	9054..9929	+	291	116332454	hemA	LBJ_4008	-	glutamyl-tRNA reductase
10	 43.59	0	9914..11542	+	542	116332455	hemCD	LBJ_4009	-	bifunctional porphobilinogen deaminase/uroporphyrinogen synthase
11	 44.03	+1	11511..12464	+	317	116332456	hemB	LBJ_4010	-	delta-aminolevulinic acid dehydratase
12	 47.36	+2	12461..13786	+	441	116332457	hemL	LBJ_4011	-	glutamate-1-semialdehyde aminotransferase
13	 41.17	0	13786..14691	+	301	116332458	-	LBJ_4012	-	sensor protein of a two component response regulator
14	 44.59	+1	14693..15385	+	230	116332459	-	LBJ_4013	-	two component regulatory system response regulator
15	 41.94	0	15375..16397	+	340	116332460	hemE	LBJ_4014	-	uroporphyrinogen decarboxylase
16	 42.15	0	16394..17743	+	449	116332461	hemN	LBJ_4015	-	coproporphyrinogen III oxidase
17	 43.22	0	17843..18793	+	316	116332462	-	LBJ_4016	-	hypothetical protein
18	 44.39	+1	18800..20101	+	433	116332463	hemY	LBJ_4017	-	protoporphyrinogen oxidase
19	 41.14	0	20091..21191	-	366	116332464	hemH	LBJ_4018	-	ferrochelatase
20	 40.92	0	21298..22404	-	368	116332465	-	LBJ_4019	-	hypothetical protein
21	 44.01	+1	22608..23525	+	305	116332466	-	LBJ_4020	-	ParA-like protein
22	 41.24	0	23518..24225	+	235	116332467	-	LBJ_4021	-	ParB-like protein
23	 43.78	0	24254..24856	+	200	116332468	-	LBJ_4022	-	flavoprotein
24	 39.29	0	25636..26391	+	251	116332469	-	LBJ_4023	-	hypothetical protein
25	 32.66	-2	27429..28610	-	393	116332470	-	LBJ_4025	-	hypothetical protein
26	 38.38	0	29782..30951	-	389	116332471	-	LBJ_4027	-	hypothetical protein
27	 43.09	0	31048..31416	+	122	116332472	-	LBJ_4028	-	cyclic nucleotide-binding protein
28	 42.57	0	31892..32638	+	248	116332473	-	LBJ_4029	-	Short chain dehydrogenase
29	 39.67	0	32614..33165	+	183	116332474	wzb	LBJ_4030	-	protein-tyrosine-phosphatase
30	 45.23	+1	33188..34456	+	422	116332475	ndh	LBJ_4031	-	NADH dehydrogenase
31	 43.04	0	34607..34987	-	126	116332476	-	LBJ_4032	-	hypothetical protein
32	 43.78	0	35409..36212	+	267	116332477	-	LBJ_4033	-	Short chain dehydrogenase
33	 42.32	0	36222..36644	+	140	116332478	-	LBJ_4034	-	hypothetical protein
34	 41.40	0	36706..37077	+	123	116332479	-	LBJ_4035	-	hypothetical protein
35	 36.12	-1	37857..39113	+	418	116332480	-	LBJ_4036	-	transposase ISLbp1
36	 38.98	0	39193..40254	+	353	116332481	-	LBJ_4037	-	hypothetical protein
37	 42.08	0	40617..41942	+	441	116332482	-	LBJ_4038	-	lipoprotein
38	 42.53	0	42990..43598	+	202	116332483	-	LBJ_4039	-	hypothetical protein
39	 45.24	+1	45366..46373	+	335	116332484	-	LBJ_4042	-	MoxR-like ATPase
40	 42.00	0	46379..47209	+	276	116332485	-	LBJ_4043	-	hypothetical protein
41	 39.66	0	47206..48075	+	289	116332486	-	LBJ_4044	-	hypothetical protein
42	 45.15	+1	48072..49010	+	312	116332487	batA	LBJ_4045	-	BatA
43	 42.24	0	49007..50050	+	347	116332488	batB	LBJ_4046	-	BatB
44	 43.35	0	50047..50745	+	232	116332489	batC	LBJ_4047	-	BatC
45	 41.68	0	50739..52379	+	546	116332490	batD	LBJ_4048	-	BatD
46	 41.11	0	52376..54187	+	603	116332491	htpG	LBJ_4049	-	heat shock protein 90
47	 39.51	0	54206..54772	+	188	116332492	-	LBJ_4050	-	hypothetical protein
48	 39.32	0	54753..55253	-	166	116332493	-	LBJ_4051	-	hypothetical protein
49	 37.65	-1	55739..55900	+	53	116332494	-	LBJ_4052	-	lipoprotein
50	 41.41	0	55962..56951	+	329	116332495	-	LBJ_4053	-	hypothetical protein
51	 37.43	-1	57603..57944	-	113	116332496	-	LBJ_4054	-	antagonist of anti-sigma factor
52	 42.23	0	57941..58963	-	340	116332497	-	LBJ_4055	-	sugar kinase
53	 42.09	0	59410..59877	+	155	116332498	-	LBJ_4056	-	hypothetical protein
54	 43.78	0	60260..60910	+	216	116332499	-	LBJ_4057	-	hypothetical protein
55	 42.80	0	60965..61777	-	270	116332500	-	LBJ_4058	-	Fatty-acid desaturase
56	 41.01	0	63280..63930	+	216	116332501	-	LBJ_4059	-	dinucleotide-binding protein
57	 40.15	0	64306..64833	+	175	116332502	-	LBJ_4060	-	hypothetical protein
58	 45.43	+1	65026..65976	-	316	116332503	-	LBJ_4061	-	protein kinase involved in LAO amino acid transport and metabolism
59	 45.85	+1	65997..68009	-	670	116332504	meaA	LBJ_4062	-	methylmalonyl-CoA mutase
60	 39.60	0	68119..69459	+	446	116332505	-	LBJ_4063	-	hypothetical protein
61	 39.78	0	69525..70253	+	242	116332506	-	LBJ_4064	-	hypothetical protein
62	 33.60	-2	71149..72624	+	491	116332507	-	LBJ_4065	-	hypothetical protein
63	 39.22	0	73091..73498	+	135	116332508	-	LBJ_4066	-	hypothetical protein
64	 40.14	0	73629..74333	+	234	116332509	-	LBJ_4067	-	LipL45-related lipoprotein
65	 39.12	0	74873..76480	+	535	116332510	-	LBJ_4068	-	GGDEF family protein
66	 37.11	-1	77013..78731	+	572	116332511	-	LBJ_4069	-	two component complex response regulator
67	 35.95	-1	78928..79500	+	190	116332512	-	LBJ_4070	-	hypothetical protein
68	 39.27	0	79388..80482	+	364	116332513	-	LBJ_4071	-	transposase IS1533
69	 40.70	0	83878..84882	+	334	116332514	-	LBJ_4075	-	hypothetical protein
70	 45.22	+1	85289..86845	+	518	116332515	-	LBJ_4076	-	FAD-dependent dehydrogenase
71	 39.58	0	86989..87228	-	79	116332516	-	LBJ_4077	-	hypothetical protein
72	 42.84	0	92339..93085	-	248	116332517	-	LBJ_4081	-	hypothetical protein
73	 39.66	0	93130..94614	-	494	116332518	-	LBJ_4082	-	polysaccharide deacetylase
74	 41.84	0	94688..95251	-	187	116332519	-	LBJ_4083	-	TPR repeat-containing lipoprotein
75	 40.89	0	95274..95789	-	171	116332520	-	LBJ_4084	-	hypothetical protein
76	 40.89	0	96695..97501	+	268	116332521	-	LBJ_4085	-	sugar phosphatase
77	 40.06	0	98083..98409	+	108	116332522	-	LBJ_4086	-	hypothetical protein
78	 37.42	-1	98990..99454	+	154	116332523	-	LBJ_4087	-	hypothetical protein
79	 40.90	0	99495..100472	+	325	116332524	-	LBJ_4088	-	ArsR family transcriptional regulator
80	 46.15	+1	100475..101785	+	436	116332525	sahH	LBJ_4089	-	S-adenosyl-L-homocysteine hydrolase
81	 44.00	+1	101861..102160	+	99	116332526	-	LBJ_4090	-	hypothetical protein
82	 45.41	+1	102207..105950	+	1247	116332527	metH	LBJ_4091	-	B12-dependent methionine synthase
83	 36.97	-1	106000..106329	+	109	116332528	-	LBJ_4092	-	hypothetical protein
84	 42.56	0	106659..107579	-	306	116332529	-	LBJ_4093	-	hypothetical protein
85	 44.27	+1	107692..109026	+	444	116332530	pfkA	LBJ_4094	-	diphosphate--fructose-6-phosphate 1-phosphotransferase
86	 40.88	0	109141..110889	-	582	116332531	-	LBJ_4095	-	Serine phosphatase RsbU, regulator of sigma subunit
87	 44.29	+1	111053..111928	-	291	116332532	argB	LBJ_4096	-	acetylglutamate kinase
88	 42.46	0	112008..112763	+	251	116332533	-	LBJ_4097	-	Short chain dehydrogenase
89	 40.30	0	112893..114614	-	573	116332534	-	LBJ_4098	-	protease
90	 40.83	0	114615..115094	-	159	116332535	-	LBJ_4099	-	bacterioferritin comigratory protein
91	 42.90	0	116041..116385	+	114	116332536	-	LBJ_4100	-	hypothetical protein
92	 43.78	0	116452..117552	+	366	116332537	-	LBJ_4101	-	hypothetical protein
93	 39.00	0	119093..120187	-	364	116332538	-	LBJ_4103	-	transposase IS1533
94	 40.37	0	122334..122873	-	179	116332539	aroK	LBJ_4105	-	shikimate kinase
95	 40.02	0	122870..123721	-	283	116332540	-	LBJ_4106	-	Signal transduction protein
96	 42.80	0	123728..124234	-	168	116332541	-	LBJ_4107	-	chemotaxis protein
97	 42.79	0	124409..125635	+	408	116332542	traB	LBJ_4108	-	pheromone shutdown protein
98	 38.69	0	125632..127758	+	708	116332543	-	LBJ_4109	-	Signal transduction protein
99	 40.70	0	127759..128328	+	189	116332544	-	LBJ_4110	-	lipoprotein
100	 38.75	0	128416..129393	-	325	116332545	-	LBJ_4111	-	hypothetical protein
41.05	MEAN

2.74	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.