IslandPath Analysis: Rickettsia rickettsii str. Iowa



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.95   STD DEV: 4.51
Rickettsia rickettsii str. Iowa, complete genome - 1..1268175
1384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.59	0	1..822	+	273	165932550	-	RrIowa_0001	-	hypothetical protein
2	 29.56	0	1082..1399	+	105	165932551	-	RrIowa_0002	-	thioredoxin
3	 29.60	0	1409..2158	+	249	165932552	-	RrIowa_0003	-	O-antigen export system ATP-binding protein
4	 29.09	0	2159..2935	+	258	165932553	-	RrIowa_0004	-	O-antigen export system permease protein
5	 32.56	0	2932..6033	+	1033	165932554	-	RrIowa_0005	-	putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase
6	 32.51	0	6077..6319	-	80	165932555	-	RrIowa_0006	-	PEMK-like protein
7	 36.98	+1	6443..7237	-	264	165932556	-	RrIowa_0007	-	UDP-N-acetylglucosamine acyltransferase
8	 36.07	0	7244..7681	-	145	165932557	-	RrIowa_0008	-	(3R)-hydroxymyristoyl-ACP dehydratase
9	 35.16	0	7877..8914	-	345	165932558	-	RrIowa_0009	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
10	 41.81	+2	8966..9142	-	58	165932559	-	RrIowa_0010	-	hypothetical protein
11	 34.17	0	9627..9986	+	119	165932560	-	RrIowa_0011	-	hypothetical protein
12	 29.03	0	10010..10195	+	61	165932561	-	RrIowa_0012	-	hypothetical protein
13	 21.28	-2	10961..11101	+	46	165932562	-	RrIowa_0013	-	hypothetical protein
14	 28.99	0	11213..11350	+	45	165932563	-	RrIowa_0014	-	hypothetical protein
15	 26.00	-1	11497..11646	-	49	165932564	-	RrIowa_0015	-	hypothetical protein
16	 32.21	0	11702..11968	-	88	165932565	-	RrIowa_0016	-	hypothetical protein
17	 29.33	0	12022..12321	-	99	165932566	-	RrIowa_0017	-	hypothetical protein
18	 39.71	+1	12789..13808	+	339	165932567	-	RrIowa_0019	-	tRNA-dihydrouridine synthase
19	 28.68	0	13826..14749	+	307	165932568	-	RrIowa_0020	-	hypothetical protein
20	 24.36	-1	14835..14990	+	51	165932569	-	RrIowa_0021	-	hypothetical protein
21	 29.36	0	14998..15525	-	175	165932570	-	RrIowa_0022	-	ATP/GTP hydrolase
22	 30.19	0	15513..16466	-	317	165932571	-	RrIowa_0023	-	periplasmic solute binding protein
23	 31.12	0	16463..17773	-	436	165932572	-	RrIowa_0024	-	poly(A) polymerase
24	 32.44	0	18263..18487	-	74	165932573	-	RrIowa_0025	-	hypothetical protein
25	 32.52	0	18572..19309	-	245	165932574	comA	RrIowa_0026	-	DNA translocation competence protein
26	 27.89	0	19321..19467	-	48	165932575	-	RrIowa_0027	-	hypothetical protein
27	 29.91	0	19665..19781	+	38	165932576	-	RrIowa_0028	-	hypothetical protein
28	 33.82	0	20187..25787	+	1866	165932577	-	RrIowa_0029	-	hypothetical protein
29	 32.38	0	26069..26173	+	34	165932578	-	RrIowa_0031	-	hypothetical protein
30	 26.05	-1	27105..27845	+	246	165932579	-	RrIowa_0032	-	hypothetical protein
31	 26.47	-1	27944..28045	+	33	165932580	-	RrIowa_0033	-	hypothetical protein
32	 22.95	-1	28186..28368	+	60	165932581	-	RrIowa_0034	-	TPR repeat-containing protein
33	 29.90	0	28700..29194	-	164	165932582	-	RrIowa_0035	-	F0F1 ATP synthase subunit B
34	 25.32	-1	29194..29667	-	157	165932583	-	RrIowa_0036	-	F0F1 ATP synthase subunit B'
35	 37.13	+1	29686..29922	-	78	165932584	-	RrIowa_0037	-	F0F1 ATP synthase subunit C
36	 30.32	0	30106..30834	-	242	165932585	-	RrIowa_0038	-	F0F1 ATP synthase subunit A
37	 28.28	0	30839..31135	-	98	165932586	-	RrIowa_0039	-	hypothetical protein
38	 31.06	0	31213..32046	-	277	165932587	dsbA	RrIowa_0040	-	thiol:disulfide interchange protein
39	 35.44	0	32210..32731	+	173	165932588	-	RrIowa_0041	-	carD-like transcriptional regulator
40	 32.02	0	32978..34582	-	534	165932589	-	RrIowa_0042	-	methyltransferase
41	 34.29	0	34705..34914	+	69	165932590	-	RrIowa_0043	-	hypothetical protein
42	 31.12	0	35011..36093	-	360	165932591	recF	RrIowa_0044	-	recombination protein F
43	 29.70	0	36117..36419	-	100	165932592	-	RrIowa_0045	-	hypothetical protein
44	 35.96	0	36403..36516	-	37	165932593	-	RrIowa_0046	-	hypothetical protein
45	 27.07	-1	36755..37249	-	164	165932594	-	RrIowa_0047	-	dihydrofolate reductase
46	 26.88	-1	37246..37338	-	30	165932595	-	RrIowa_0048	-	hypothetical protein
47	 30.61	0	38996..39655	-	219	165932596	-	RrIowa_0051	-	hypothetical protein
48	 26.00	-1	39737..40036	-	99	165932597	-	RrIowa_0052	-	hypothetical protein
49	 27.02	-1	40204..40599	-	131	165932598	-	RrIowa_0053	-	hypothetical protein
50	 19.35	-2	40706..40891	+	61	165932599	-	RrIowa_0054	-	hypothetical protein
51	 23.81	-1	41023..41295	-	90	165932601	-	RrIowa_0056	-	hypothetical protein
52	 19.77	-2	41279..41455	+	58	165932600	-	RrIowa_0055	-	hypothetical protein
53	 25.35	-1	41671..41958	-	95	165932602	-	RrIowa_0057	-	hypothetical protein
54	 27.12	-1	42131..42307	-	58	165932603	-	RrIowa_0058	-	hypothetical protein
55	 21.15	-2	42297..42452	-	51	165932604	-	RrIowa_0059	-	hypothetical protein
56	 26.63	-1	42595..43191	+	198	165932605	-	RrIowa_0060	-	cytochrome c oxidase Cu(A) center assembly protein
57	 31.58	0	43202..43771	-	189	165932606	algH	RrIowa_0061	-	hypothetical protein
58	 27.06	-1	43837..44505	+	222	165932607	-	RrIowa_0062	-	hypothetical protein
59	 32.93	0	45067..45564	+	165	165932608	-	RrIowa_0063	-	hypothetical protein
60	 34.34	0	45569..45865	+	98	165932609	-	RrIowa_0064	-	hypothetical protein
61	 36.55	+1	45968..46309	+	113	165932610	-	RrIowa_0065	-	hypothetical protein
62	 34.32	0	46543..47865	-	440	165932611	-	RrIowa_0066	-	hypothetical protein
63	 29.34	0	48027..48377	-	116	165932612	-	RrIowa_0067	-	hypothetical protein
64	 24.85	-1	48534..48698	-	54	165932613	-	RrIowa_0068	-	hypothetical protein
65	 31.31	0	49184..49381	-	65	165932614	-	RrIowa_0071	-	hypothetical protein
66	 38.16	+1	49809..50264	-	151	165932615	-	RrIowa_0072	-	acetoacetyl-CoA reductase
67	 34.57	0	50373..50534	-	53	165932616	-	RrIowa_0073	-	acetoacetyl-CoA reductase
68	 33.92	0	50834..51004	-	56	165932617	-	RrIowa_0074	-	hypothetical protein
69	 36.36	0	52562..55135	+	857	165932618	clpB	RrIowa_0079	-	ClpB
70	 25.61	-1	55366..55857	-	163	165932619	-	RrIowa_0080	-	hypothetical protein
71	 34.01	0	55984..57018	-	344	165932620	-	RrIowa_0081	-	O-sialoglycoprotein endopeptidase
72	 31.49	0	57202..58395	-	397	165932621	-	RrIowa_0082	-	acyl-CoA desaturase
73	 27.22	-1	58674..58853	-	59	165932622	phoB	RrIowa_0083	-	phosphate regulon transcriptional regulatory protein
74	 26.62	-1	59305..59706	+	133	165932623	-	RrIowa_0084	-	30S ribosomal protein S6
75	 31.94	0	59731..60018	+	95	165932624	-	RrIowa_0085	-	30S ribosomal protein S18
76	 30.04	0	60030..60545	+	171	165932625	-	RrIowa_0086	-	50S ribosomal protein L9
77	 38.00	+1	60688..60837	-	49	165932626	-	RrIowa_0087	-	hypothetical protein
78	 30.90	0	60847..62283	+	478	165932627	tilS	RrIowa_0088	-	tRNA(Ile)-lysidine synthetase
79	 37.62	+1	62383..64296	+	637	165932628	ftsH	RrIowa_0089	-	cell division protein
80	 32.32	0	64380..64577	+	65	165932629	-	RrIowa_0090	-	hypothetical protein
81	 36.64	+1	65083..65868	+	261	165932630	-	RrIowa_0091	-	succinate dehydrogenase iron-sulfur subunit
82	 30.30	0	65958..66155	+	65	165932631	-	RrIowa_0092	-	hypothetical protein
83	 35.29	0	66152..66304	+	50	165932632	-	RrIowa_0093	-	hypothetical protein
84	 33.09	0	66429..67649	-	406	165932633	-	RrIowa_0094	-	putative cytoplasmic protein
85	 31.67	0	67628..68407	-	259	165932634	-	RrIowa_0095	-	prolipoprotein diacylglyceryl transferase
86	 24.04	-1	68466..68648	+	60	165932635	-	RrIowa_0096	-	hypothetical protein
87	 27.66	0	68652..69815	+	387	165932636	-	RrIowa_0097	-	mechanosensitive ion channel
88	 30.36	0	70007..71689	+	560	165932637	yidC	RrIowa_0098	-	putative inner membrane protein translocase component YidC
89	 30.04	0	71693..72238	+	181	165932638	-	RrIowa_0099	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase
90	 29.59	0	72252..72812	+	186	165932639	-	RrIowa_0100	-	hypothetical protein
91	 30.95	0	72981..73400	-	139	165932640	-	RrIowa_0101	-	hypothetical protein
92	 35.19	0	74731..74838	+	35	165932641	-	RrIowa_0104	-	hypothetical protein
93	 30.07	0	74905..75579	-	224	165932642	-	RrIowa_0105	-	peptide deformylase
94	 31.60	0	75778..77274	+	498	165932643	-	RrIowa_0106	-	ADP,ATP carrier protein
95	 34.88	0	77504..78799	+	431	165932644	uhpC	RrIowa_0107	-	regulatory protein
96	 32.86	0	78824..79246	+	140	165932645	-	RrIowa_0108	-	nucleoside diphosphate kinase
97	 32.74	0	79250..81118	+	622	165932646	-	RrIowa_0109	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
98	 25.56	-1	81099..81677	+	192	165932647	-	RrIowa_0110	-	glucose-inhibited division protein B
99	 28.26	0	81674..82441	+	255	165932648	parA	RrIowa_0111	-	chromosome partitioning protein
100	 27.41	-1	82428..83288	+	286	165932649	parB	RrIowa_0112	-	chromosome partitioning protein
31.95	MEAN

4.51	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.