IslandPath Analysis: Streptococcus pneumoniae TIGR4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 39.46   STD DEV: 5.02
Streptococcus pneumoniae TIGR4, complete genome - 1..2160842
2105 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 36.49	0	197..1558	+	453	15899950	dnaA	SP_0001	-	chromosomal replication initiation protein
2	 34.30	-1	1717..2853	+	378	15899951	-	SP_0002	-	DNA polymerase III subunit beta
3	 34.94	0	2864..3112	+	82	15899952	-	SP_0003	-	hypothetical protein
4	 40.23	0	3196..4311	+	371	15899953	-	SP_0004	-	translation-associated GTPase
5	 33.68	-1	4382..4951	+	189	15899954	-	SP_0005	-	peptidyl-tRNA hydrolase
6	 35.01	0	4952..8461	+	1169	15899955	-	SP_0006	-	transcription-repair coupling factor
7	 34.83	0	8519..8785	+	88	15899956	-	SP_0007	-	S4 domain-containing protein
8	 34.69	0	8778..9146	+	122	15899957	-	SP_0008	-	hypothetical protein
9	 30.89	-1	9151..9273	+	40	15899958	-	SP_0009	-	hypothetical protein
10	 32.78	-1	9266..10534	+	422	15899959	-	SP_0010	-	hypothetical protein
11	 33.80	-1	10531..11808	+	425	15899960	-	SP_0011	-	MesJ/Ycf62 family protein
12	 33.15	-1	11812..12354	+	180	15899961	-	SP_0012	-	hypoxanthine-guanine phosphoribosyltransferase
13	 39.10	0	12370..14328	+	652	15899962	-	SP_0013	-	cell division protein FtsH
14	 37.50	0	14450..14929	+	159	15899963	-	SP_0014	-	transcriptional regulator ComX1
15	 35.49	0	20404..20820	+	138	15899964	-	SP_0015	-	IS630-Spn1, transposase Orf1
16	 38.05	0	20929..21267	+	112	15899965	-	SP_0016	-	IS630-Spn1, transposase Orf2
17	 28.81	-2	22359..22601	+	80	15899966	-	SP_0018	-	hypothetical protein
18	 40.56	0	22832..24118	+	428	15899967	-	SP_0019	-	adenylosuccinate synthetase
19	 43.59	0	24319..24786	+	155	15899968	-	SP_0020	-	cytidine/deoxycytidylate deaminase family protein
20	 44.37	0	24973..25416	+	147	15899969	dut	SP_0021	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
21	 41.09	0	25418..25933	+	171	15899970	-	SP_0022	-	hypothetical protein
22	 43.57	0	27381..27878	+	165	15899971	-	SP_0024	-	hypothetical protein
23	 34.76	0	27903..28112	+	69	15899972	-	SP_0025	-	hypothetical protein
24	 39.10	0	28094..28717	+	207	15899973	-	SP_0026	-	hypothetical protein
25	 41.69	0	28862..29830	+	322	15899974	-	SP_0027	-	ribose-phosphate pyrophosphokinase
26	 44.87	+1	30372..30605	-	77	15899975	-	SP_0029	-	hypothetical protein
27	 43.73	0	30563..30889	-	108	15899976	-	SP_0030	-	competence-induced protein Ccs16
28	 39.05	0	30929..31243	-	104	15899977	-	SP_0031	-	hypothetical protein
29	 43.77	0	31535..34168	+	877	15899978	-	SP_0032	-	DNA polymerase I
30	 44.52	+1	34253..34690	+	145	15899979	-	SP_0033	-	hypothetical protein
31	 46.59	+1	35009..36019	-	336	15899980	-	SP_0034	-	hypothetical protein
32	 46.07	+1	36168..37337	+	389	15899981	-	SP_0035	-	aromatic amino acid aminotransferase
33	 41.50	0	37334..38104	+	256	15899982	recO	SP_0036	-	DNA repair protein RecO
34	 47.63	+1	38101..39093	+	330	15899983	-	SP_0037	-	putative glycerol-3-phosphate acyltransferase PlsX
35	 38.89	0	39099..39332	+	77	15899984	-	SP_0038	-	acyl carrier protein, putative
36	 26.19	-2	39716..39841	-	41	15899985	-	SP_0040	-	hypothetical protein
37	 47.19	+1	39871..40101	+	76	15899986	-	SP_0041	-	bacteriocin BlpU
38	 44.34	0	40816..42969	+	717	15899987	-	SP_0042	-	competence factor transporting ATP-binding/permease protein ComA
39	 44.52	+1	42982..44331	+	449	15899988	-	SP_0043	-	competence factor transport protein ComB
40	 40.11	0	44501..45208	+	235	15899989	-	SP_0044	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
41	 45.54	+1	45410..49135	+	1241	15899990	-	SP_0045	-	phosphoribosylformylglycinamidine synthase, putative
42	 46.50	+1	49228..50670	+	480	15899991	-	SP_0046	-	amidophosphoribosyltransferase
43	 47.02	+1	50889..51911	+	340	15899992	-	SP_0047	-	phosphoribosylaminoimidazole synthetase
44	 47.44	+1	51908..52453	+	181	15899993	purN	SP_0048	-	phosphoribosylglycinamide formyltransferase
45	 29.22	-2	52537..53046	+	169	15899994	-	SP_0049	-	vanZ protein, putative
46	 47.03	+1	53071..54618	+	515	15899995	purH	SP_0050	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
47	 47.74	+1	54740..56002	+	420	15899996	-	SP_0051	-	phosphoribosylamine--glycine ligase
48	 47.01	+1	56259..56375	+	38	15899997	-	SP_0052	-	hypothetical protein
49	 50.31	+2	56405..56893	+	162	15899998	-	SP_0053	-	phosphoribosylaminoimidazole carboxylase catalytic subunit
50	 47.07	+1	56880..57971	+	363	15899999	-	SP_0054	-	phosphoribosylaminoimidazole carboxylase ATPase subunit
51	 35.53	0	57981..58208	+	75	15900000	-	SP_0055	-	hypothetical protein
52	 46.42	+1	58271..59569	+	432	15900001	-	SP_0056	-	adenylosuccinate lyase
53	 42.22	0	59624..63562	-	1312	15900002	-	SP_0057	-	beta-N-acetylhexosaminidase
54	 37.52	0	63890..64606	-	238	15900003	-	SP_0058	-	GntR family transcriptional regulator
55	 24.51	-2	64593..64694	+	33	15900004	-	SP_0059	-	hypothetical protein
56	 42.11	0	64955..66742	+	595	15900005	-	SP_0060	-	Beta-galactosidase 3
57	 41.30	0	66739..67215	+	158	15900006	-	SP_0061	-	PTS system, IIB component
58	 44.26	0	67243..68148	+	301	15900007	-	SP_0062	-	PTS system, IIC component
59	 40.44	0	68135..68950	+	271	15900008	-	SP_0063	-	PTS system, IID component
60	 43.70	0	68957..69361	+	134	15900009	-	SP_0064	-	PTS system, IIA component
61	 41.73	0	69660..70826	+	388	15900010	-	SP_0065	-	sugar isomerase domain-containing protein
62	 45.38	+1	70942..71979	+	345	15900011	-	SP_0066	-	aldose 1-epimerase
63	 40.23	0	72141..72401	+	86	15900012	-	SP_0067	-	hypothetical protein
64	 38.89	0	72456..72653	+	65	15900013	-	SP_0068	-	hypothetical protein
65	 42.14	0	72674..73309	+	211	15900014	-	SP_0069	-	choline binding protein I
66	 35.29	0	73353..73454	+	33	15900015	-	SP_0070	-	hypothetical protein
67	 36.89	0	73761..79331	+	1856	15900016	-	SP_0071	-	immunoglobulin A1 protease
68	 35.96	0	79434..79547	+	37	15900017	-	SP_0072	-	hypothetical protein
69	 44.80	+1	79687..80541	+	284	15900018	-	SP_0073	-	hypothetical protein
70	 46.24	+1	80647..81204	+	185	15900019	-	SP_0074	-	acetyltransferase
71	 49.65	+2	81481..82185	+	234	15900020	-	SP_0075	-	phosphorylase Pnp/Udp family protein
72	 35.48	0	82590..82682	-	30	15900021	-	SP_0076	-	hypothetical protein
73	 31.45	-1	82659..82817	+	52	15900022	-	SP_0077	-	hypothetical protein
74	 41.52	0	82798..84177	+	459	15900023	-	SP_0078	-	Trk family potassium uptake protein
75	 43.69	0	84191..84856	+	221	15900024	-	SP_0079	-	Trk family potassium uptake protein
76	 37.96	0	84877..84984	+	35	15900025	-	SP_0080	-	hypothetical protein
77	 42.93	0	86298..88871	+	857	15900026	-	SP_0082	-	cell wall surface anchor family protein
78	 41.63	0	89038..89736	+	232	15900027	-	SP_0083	-	DNA-binding response regulator
79	 44.06	0	89733..90785	+	350	15900028	-	SP_0084	-	sensor histidine kinase
80	 43.30	0	90980..91591	+	203	15900029	rpsD	SP_0085	-	30S ribosomal protein S4
81	 29.79	-1	92025..92165	-	46	15900030	-	SP_0087	-	hypothetical protein
82	 42.22	0	92236..92505	+	89	15900031	-	SP_0088	-	hypothetical protein
83	 38.54	0	92585..92680	+	31	15900032	-	SP_0089	-	hypothetical protein
84	 40.83	0	92969..93928	+	319	15900033	-	SP_0090	-	ABC transporter, permease protein
85	 41.99	0	93942..94865	+	307	15900034	-	SP_0091	-	ABC transporter, permease protein
86	 38.41	0	95123..96598	+	491	15900035	-	SP_0092	-	ABC transporter, substrate-binding protein
87	 39.47	0	96628..96741	-	37	15900036	-	SP_0093	-	hypothetical protein
88	 33.33	-1	96713..96820	+	35	15900037	-	SP_0094	-	hypothetical protein
89	 44.07	0	96870..97856	+	328	15900038	-	SP_0095	-	hypothetical protein
90	 41.23	0	98131..98991	+	286	15900039	-	SP_0096	-	hypothetical protein
91	 40.19	0	99169..100233	-	354	15900040	-	SP_0097	-	hypothetical protein
92	 41.01	0	100296..101207	-	303	15900041	-	SP_0098	-	hypothetical protein
93	 43.94	0	101200..101793	-	197	15900042	-	SP_0099	-	hypothetical protein
94	 42.20	0	101780..102106	-	108	15900043	-	SP_0100	-	hypothetical protein
95	 44.82	+1	102245..103411	-	388	15900044	-	SP_0101	-	transporter, putative
96	 32.96	-1	103562..104626	+	354	15900045	-	SP_0102	-	glycosyl transferase
97	 42.14	0	104668..106518	+	616	15900046	-	SP_0103	-	capsular polysaccharide biosynthesis protein, putative
98	 42.97	0	106956..107588	-	210	15900047	-	SP_0104	-	HAD superfamily hydrolase
99	 47.88	+1	107610..108482	-	290	15900048	-	SP_0105	-	L-serine dehydratase, iron-sulfur-dependent, alpha subunit
100	 41.67	0	108491..109162	-	223	15900049	-	SP_0106	-	L-serine dehydratase, iron-sulfur-dependent, beta subunit
39.46	MEAN

5.02	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.