IslandPath Analysis: Sorangium cellulosum 'So ce 56'



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 71.02   STD DEV: 4.11
Sorangium cellulosum 'So ce 56', complete genome - 1..13033779
9384 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 68.71	0	1..1416	+	471	162448270	dnaA	sce0001	-	chromosomal replication initiator protein DnaA
2	 74.02	0	1450..5367	-	1305	162448271	-	sce0002	-	protein kinase
3	 70.05	0	5488..7350	-	620	162448272	dnaK1	sce0003	-	dnaK protein
4	 69.40	0	7538..8122	-	194	162448273	grpE	sce0004	-	chloroplast GrpE protein
5	 74.03	0	8397..9659	+	420	162448274	argD	sce0005	-	acetylornithine aminotransferase
6	 77.08	+1	9661..12108	+	815	162448275	-	sce0006	-	cation-translocating P-type ATPase
7	 67.93	0	12157..12630	-	157	162448276	fur	sce0007	-	ferric uptake regulation protein
8	 68.90	0	12768..13841	-	357	162448277	-	sce0008	-	hypothetical protein
9	 73.18	0	13900..14697	-	265	162448278	-	sce0009	-	hypothetical protein
10	 70.69	0	15042..16085	+	347	162448279	hrcA	sce0010	-	heat-inducible transcriptional repressor
11	 75.91	+1	16078..17148	-	356	162448280	rluD1	sce0011	-	ribosomal large subunit pseudouridine synthase D
12	 70.62	0	17337..18197	+	286	162448281	-	sce0012	-	response regulator
13	 70.70	0	18294..21098	+	934	162448282	-	sce0013	-	hypothetical protein
14	 74.39	0	21433..23037	-	534	162448283	hemD	sce0014	-	uroporphyrinogen-III synthase
15	 70.77	0	23241..23606	+	121	162448284	-	sce0015	-	hypothetical protein
16	 72.26	0	23817..24818	+	333	162448285	uroS	sce0016	-	delta-aminolevulinic acid dehydratase
17	 75.17	+1	24822..25397	+	191	162448286	-	sce0017	-	hypothetical protein
18	 71.05	0	25409..27211	-	600	162448287	msbA1	sce0018	-	carbohydrate ABC transporter
19	 70.12	0	27361..29157	-	598	162448288	msbA2	sce0019	-	carbohydrate ABC transporter
20	 73.84	0	29184..30605	-	473	162448289	-	sce0020	-	hypothetical protein
21	 73.13	0	30983..31585	+	200	162448290	kpH	sce0021	-	pseudouridylate synthase
22	 72.06	0	31725..33614	-	629	162448291	-	sce0022	-	protein kinase
23	 70.76	0	33798..34652	-	284	162448292	-	sce0023	-	hypothetical protein
24	 73.30	0	34663..35823	-	386	162448293	-	sce0024	-	hypothetical protein
25	 72.94	0	36099..37007	+	302	162448294	-	sce0025	-	hypothetical protein
26	 75.32	+1	37138..38883	+	581	162448295	lnt	sce0026	-	hypothetical protein
27	 65.37	-1	38870..39178	-	102	162448296	-	sce0027	-	hypothetical protein
28	 70.13	0	39247..39852	-	201	162448297	-	sce0028	-	hypothetical protein
29	 66.05	-1	39860..40510	-	216	162448298	tal2	sce0029	-	hypothetical protein
30	 65.88	-1	40647..43682	-	1011	162448299	secA	sce0030	-	preprotein translocase SecA subunit
31	 72.14	0	44620..45240	+	206	162448300	-	sce0031	-	putative two component response regulator
32	 75.23	+1	45194..45940	-	248	162448301	-	sce0032	-	CRP family transcriptional regulator
33	 64.63	-1	46299..47819	+	506	162448302	rpoN	sce0033	-	RNA polymerase sigma-54 factor
34	 71.50	0	47882..48874	+	330	162448303	-	sce0034	-	hypothetical protein
35	 75.18	+1	48915..49913	+	332	162448304	-	sce0035	-	hypothetical protein
36	 70.15	0	49972..51234	-	420	162448305	fbp1	sce0036	-	fructose-2,6-bisphosphate 2-phosphatase
37	 75.89	+1	51244..52056	-	270	162448306	-	sce0037	-	hypothetical protein
38	 68.41	0	52143..53348	+	401	162448307	-	sce0038	-	protein kinase
39	 73.38	0	53766..56312	+	848	162448308	pbp1	sce0039	-	penicillin-binding protein
40	 74.89	0	56617..57321	-	234	162448309	-	sce0040	-	hypothetical protein
41	 75.69	+1	57451..58458	-	335	162448310	-	sce0041	-	hypothetical protein
42	 74.14	0	58445..59809	-	454	162448311	-	sce0042	-	protein kinase
43	 73.82	0	59978..60970	-	330	162448312	-	sce0043	-	hypothetical protein
44	 72.29	0	61113..62090	-	325	162448313	speB1	sce0044	-	agmatinase
45	 73.97	0	62099..62878	-	259	162448314	plsC1	sce0045	-	1-acylglycerol-3-phosphate O-acyltransferase
46	 67.91	0	62891..63451	-	186	162448315	-	sce0046	-	acetyltransferase
47	 71.97	0	63615..64595	-	326	162448316	-	sce0047	-	putative 3-oxoacyl-[acyl-carrier-protein] reductase
48	 71.92	0	64837..67065	-	742	162448317	-	sce0048	-	multifunctional fatty acid oxidation complex subunit alpha
49	 72.31	0	67062..68372	-	436	162448318	-	sce0049	-	3-ketoacyl-CoA thiolase
50	 61.84	-2	68841..69047	+	68	162448319	-	sce0050	-	hypothetical protein
51	 74.68	0	69241..71187	-	648	162448320	-	sce0051	-	hypothetical protein
52	 71.48	0	71337..72230	-	297	162448321	-	sce0052	-	hypothetical protein
53	 71.38	0	72275..73081	-	268	162448322	-	sce0053	-	hypothetical protein
54	 71.55	0	73189..74886	-	565	162448323	-	sce0054	-	hypothetical protein
55	 71.09	0	75096..76292	+	398	162448324	-	sce0055	-	hypothetical protein
56	 71.21	0	76330..79650	+	1106	162448325	-	sce0056	-	hypothetical protein
57	 71.54	0	79812..80447	-	211	162448326	-	sce0057	-	hypothetical protein
58	 66.52	-1	80931..82277	-	448	162448327	-	sce0058	-	hypothetical protein
59	 73.72	0	82601..83593	-	330	162448328	-	sce0059	-	hypothetical protein
60	 74.74	0	83602..85125	-	507	162448329	-	sce0060	-	protein kinase
61	 73.70	0	85404..86783	-	459	162448330	-	sce0061	-	putative cAMP-binding protein
62	 73.11	0	86883..88373	-	496	162448331	dlhH1	sce0062	-	putative carboxymethylenebutenolidase
63	 72.76	0	88685..89980	-	431	162448332	-	sce0063	-	putative transcriptional regulator
64	 65.30	-1	90285..91160	-	291	162448333	-	sce0064	-	hypothetical protein
65	 70.21	0	91201..92046	-	281	162448334	-	sce0065	-	hypothetical protein
66	 70.98	0	92301..93923	+	540	162448335	yhjG1	sce0066	-	pentachlorophenol monooxygenase
67	 70.75	0	93993..94628	+	211	162448336	-	sce0067	-	TetR family transcriptional regulator
68	 69.55	0	94679..95545	-	288	162448337	-	sce0068	-	chaperonin (heat shock protein 33)
69	 72.09	0	95736..99995	-	1419	162448338	sdr	sce0069	-	cell surface SD repeat-containing protein
70	 71.92	0	100009..101835	-	608	162448339	-	sce0070	-	outer membrane porin precursor
71	 63.07	-1	102182..102793	+	203	162448340	sodA	sce0071	-	hypothetical protein
72	 70.47	0	102798..103691	+	297	162448341	-	sce0072	-	acetyltransferase
73	 68.16	0	103737..105071	-	444	162448342	argB1	sce0073	-	acetylglutamate kinase
74	 66.87	-1	105077..106078	-	333	162448343	argF1	sce0074	-	N-acetylornithine carbamoyltransferase
75	 69.55	0	106568..106879	+	103	162448344	-	sce0075	-	hypothetical protein
76	 69.32	0	107087..107614	+	175	162448345	-	sce0076	-	hypothetical protein
77	 64.22	-1	107663..108070	+	135	162448346	-	sce0077	-	hypothetical protein
78	 75.80	+1	108007..111771	-	1254	162448347	-	sce0078	-	ATP-dependent deoxyribonuclease subunit A
79	 75.62	+1	112023..112982	+	319	162448348	chlG	sce0079	-	putative octaprenyltransferase
80	 71.84	0	112979..113713	+	244	162448349	hemH1	sce0080	-	ferrochelatase
81	 77.45	+1	113710..114627	+	305	162448350	-	sce0081	-	hypothetical protein
82	 72.71	0	114642..115352	+	236	162448351	-	sce0082	-	hypothetical protein
83	 61.63	-2	115431..117158	-	575	162448353	-	sce_pseudo_01	-	pseudogene
84	 70.35	0	117146..117607	+	153	162448352	-	sce0083	-	hypothetical protein
85	 73.49	0	117802..119442	-	546	162448354	-	sce0084	-	hypothetical protein
86	 70.39	0	120147..120764	-	205	162448355	leuD	sce0085	-	isopropylmalate isomerase small subunit
87	 68.44	0	120792..122201	-	469	162448356	leuC1	sce0086	-	isopropylmalate isomerase large subunit
88	 75.22	+1	122434..123333	+	299	162448357	-	sce0087	-	LysR family transcriptional regulator
89	 66.80	-1	123458..125002	-	514	162448358	guaB1	sce0088	-	inositol-5-monophosphate dehydrogenase
90	 69.07	0	125214..126254	-	346	162448359	-	sce0089	-	AraC family transcriptional regulator
91	 64.75	-1	126521..127459	+	312	162448360	-	sce0090	-	transposase
92	 70.05	0	127945..129066	-	373	162448361	-	sce0091	-	hypothetical protein
93	 63.98	-1	129269..129715	-	148	162448362	-	sce0092	-	hypothetical protein
94	 72.22	0	129992..130657	-	221	162448363	-	sce0093	-	hypothetical protein
95	 71.85	0	130728..131711	+	327	162448364	-	sce0094	-	hypothetical protein
96	 71.79	0	131794..132612	+	272	162448365	-	sce0095	-	hypothetical protein
97	 62.26	-2	132730..133206	+	158	162448366	-	sce0096	-	hypothetical protein
98	 67.94	0	133239..134099	-	286	162448367	-	sce0097	-	proline iminopeptidase
99	 73.19	0	134226..135038	-	270	162448368	-	sce0098	-	putative carboxymethylenebutenolidase
100	 66.67	-1	135035..135451	-	138	162448369	-	sce0099	-	PPE family protein
71.02	MEAN

4.11	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.