IslandPath Analysis: Thermofilum pendens Hrk 5



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 57.76   STD DEV: 5.29
Thermofilum pendens Hrk 5, complete genome - 1..1781889
1824 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.74	0	30..881	+	283	119718919	-	Tpen_0001	-	phosphoesterase, PA-phosphatase related
2	 56.56	0	887..1984	-	365	119718920	-	Tpen_0002	-	cellulase
3	 54.84	0	2136..3023	+	295	119718921	-	Tpen_0003	-	2-acetyl-1-alkylglycerophosph ocholine esterase
4	 56.64	0	3025..4311	+	428	119718922	-	Tpen_0004	-	major facilitator transporter
5	 56.54	0	4314..5123	-	269	119718923	-	Tpen_0005	-	ABC transporter related
6	 59.25	0	5120..5941	-	273	119718924	-	Tpen_0006	-	ABC transporter related
7	 55.34	0	5938..6714	-	258	119718925	-	Tpen_0007	-	cobalt transport protein
8	 55.38	0	6756..7313	-	185	119718926	-	Tpen_0008	-	hypothetical protein
9	 60.61	0	7764..9167	-	467	119718927	-	Tpen_0009	-	transglutaminase domain-containing protein
10	 60.15	0	9259..9918	+	219	119718928	-	Tpen_0010	-	adenylate kinases
11	 58.48	0	9958..10458	+	166	119718929	-	Tpen_0011	-	hypothetical protein
12	 52.38	-1	10593..11075	-	160	119718930	-	Tpen_0012	-	hypothetical protein
13	 56.02	0	11154..12647	+	497	119718931	-	Tpen_0013	-	binding-protein-dependent transport systems inner membrane component
14	 57.05	0	12649..13386	+	245	119718932	-	Tpen_0014	-	ABC transporter related
15	 60.50	0	13738..14094	-	118	119718933	-	Tpen_0015	-	hypothetical protein
16	 59.59	0	14127..14903	-	258	119718934	-	Tpen_0016	-	hypothetical protein
17	 57.87	0	14900..15331	-	143	119718935	-	Tpen_0017	-	nucleoside 2-deoxyribosyltransferase
18	 54.19	0	15375..15887	-	170	119718936	-	Tpen_0018	-	AsnC family transcriptional regulator
19	 54.64	0	15929..16618	-	229	119718937	-	Tpen_0019	-	hypothetical protein
20	 56.14	0	16728..16955	+	75	119718938	-	Tpen_0020	-	hypothetical protein
21	 58.97	0	16955..17656	+	233	119718939	-	Tpen_0021	-	HAD family hydrolase
22	 61.11	0	17592..18203	-	203	119718940	-	Tpen_0022	-	hypothetical protein
23	 54.42	0	18184..18681	-	165	119718941	-	Tpen_0023	-	hypothetical protein
24	 52.96	0	18674..19213	-	179	119718942	-	Tpen_0024	-	hypothetical protein
25	 51.16	-1	19238..19495	-	85	119718943	-	Tpen_0025	-	hypothetical protein
26	 54.69	0	19513..20814	-	433	119718944	-	Tpen_0026	-	hypothetical protein
27	 56.94	0	21018..22220	+	400	119718945	-	Tpen_0027	-	alanine aminotransferase
28	 54.29	0	22217..22636	-	139	119718946	-	Tpen_0028	-	PilT domain-containing protein
29	 52.86	0	22624..22920	-	98	119718947	-	Tpen_0029	-	hypothetical protein
30	 58.95	0	22971..23333	+	120	119718948	-	Tpen_0030	-	hypothetical protein
31	 61.27	0	23511..24437	+	308	119718949	-	Tpen_0031	-	NAD-dependent epimerase/dehydratase
32	 51.30	-1	24418..24918	+	166	119718950	-	Tpen_0032	-	metallopeptidase-like
33	 49.60	-1	24935..25309	+	124	119718951	-	Tpen_0033	-	hypothetical protein
34	 54.20	0	25306..25722	-	138	119718952	-	Tpen_0034	-	hypothetical protein
35	 59.24	0	25762..26838	-	358	119718953	-	Tpen_0035	-	hypothetical protein
36	 54.39	0	26954..27238	+	94	119718954	-	Tpen_0036	-	hypothetical protein
37	 54.93	0	27229..27654	+	141	119718955	-	Tpen_0037	-	hypothetical protein
38	 59.67	0	27657..28199	+	180	119718956	-	Tpen_0038	-	putative adenylyl cyclase CyaB
39	 56.32	0	28180..28614	-	144	119718957	-	Tpen_0039	-	hypothetical protein
40	 61.88	0	28685..29707	+	340	119718958	-	Tpen_0040	-	glucose-inhibited division protein A
41	 58.40	0	29704..30792	-	362	119718959	-	Tpen_0041	-	radical SAM domain-containing protein
42	 63.12	+1	30844..31857	-	337	119718960	-	Tpen_0042	-	dual specificity protein phosphatase
43	 63.94	+1	31935..33326	+	463	119718961	-	Tpen_0043	-	peptidase U62, modulator of DNA gyrase
44	 64.03	+1	33323..34651	+	442	119718962	-	Tpen_0044	-	peptidase U62, modulator of DNA gyrase
45	 59.83	0	34661..35494	-	277	119718963	-	Tpen_0045	-	hypothetical protein
46	 63.65	+1	35568..36461	-	297	119718964	-	Tpen_0046	-	hypothetical protein
47	 63.30	+1	36543..37196	+	217	119718965	-	Tpen_0047	-	phosphoribosyltransferase
48	 65.47	+1	37222..37554	+	110	119718966	-	Tpen_0048	-	Fis family transcriptional regulator
49	 51.28	-1	37596..37829	+	77	119718967	-	Tpen_0049	-	hypothetical protein
50	 58.16	0	37810..38232	+	140	119718968	-	Tpen_0050	-	hypothetical protein
51	 64.84	+1	38357..39124	+	255	119718969	-	Tpen_0051	-	hypothetical protein
52	 60.70	0	39217..39618	+	133	119718970	-	Tpen_0052	-	hypothetical protein
53	 65.10	+1	39606..40943	-	445	119718971	-	Tpen_0053	-	amino acid permease-associated region
54	 55.22	0	40977..41369	-	130	119718972	-	Tpen_0054	-	hypothetical protein
55	 47.38	-1	41509..41985	-	158	119718973	-	Tpen_0055	-	hypothetical protein
56	 63.24	+1	42190..42597	-	135	119718974	-	Tpen_0056	-	hypothetical protein
57	 62.12	0	42798..42929	+	43	119718975	-	Tpen_0057	-	hypothetical protein
58	 61.31	0	42992..43756	-	254	119718976	-	Tpen_0058	-	thioredoxin/glutaredoxin-like
59	 60.58	0	44153..45499	+	448	119718977	-	Tpen_0059	-	amidohydrolase
60	 59.86	0	45522..46241	+	239	119718978	-	Tpen_0060	-	purine phosphorylases family protein 1
61	 63.21	+1	46241..47020	+	259	119718979	-	Tpen_0061	-	FkbM family methyltransferase
62	 63.87	+1	47105..47818	+	237	119718980	-	Tpen_0062	-	purine phosphorylases family protein 1
63	 59.03	0	47832..48263	+	143	119718981	-	Tpen_0063	-	hypothetical protein
64	 59.20	0	48287..48808	+	173	119718982	-	Tpen_0064	-	hypothetical protein
65	 61.34	0	48840..49646	+	268	119718983	-	Tpen_0065	-	hypothetical protein
66	 59.69	0	49607..50323	-	238	119718984	-	Tpen_0066	-	cobalt transport protein
67	 59.29	0	50307..51893	-	528	119718985	-	Tpen_0067	-	ABC transporter related
68	 54.56	0	51871..52473	-	200	119718986	-	Tpen_0068	-	ABC transporter, permease protein
69	 53.69	0	52657..53619	+	320	119718987	-	Tpen_0069	-	phosphomethylpyrimidine kinase
70	 56.71	0	53689..54753	+	354	119718988	-	Tpen_0070	-	transcriptional regulator, TrmB
71	 55.80	0	54750..56405	-	551	119718989	-	Tpen_0071	-	radical SAM domain-containing protein
72	 57.19	0	56507..56833	-	108	119718990	-	Tpen_0072	-	hypothetical protein
73	 55.46	0	56850..57920	-	356	119718991	-	Tpen_0073	-	radical SAM domain-containing protein
74	 53.67	0	57954..58676	-	240	119718992	-	Tpen_0074	-	hypothetical protein
75	 52.27	-1	58722..58985	-	87	119718993	-	Tpen_0075	-	hypothetical protein
76	 57.84	0	59056..59916	+	286	119718994	-	Tpen_0076	-	6-phosphogluconate dehydrogenase, NAD-binding
77	 56.03	0	59913..60965	-	350	119718995	-	Tpen_0077	-	hypothetical protein
78	 55.04	0	60972..61805	-	277	119718996	-	Tpen_0078	-	hypothetical protein
79	 53.41	0	61805..62611	-	268	119718997	-	Tpen_0079	-	hypothetical protein
80	 51.94	-1	62608..63123	-	171	119718998	-	Tpen_0080	-	small GTP-binding protein
81	 54.05	0	63192..64388	-	398	119718999	-	Tpen_0081	-	aminotransferase, class I and II
82	 49.48	-1	64539..65021	+	160	119719000	-	Tpen_0082	-	hypothetical protein
83	 55.83	0	64964..65332	-	122	119719001	-	Tpen_0083	-	hypothetical protein
84	 51.11	-1	65354..65488	-	44	119719002	-	Tpen_0084	-	hypothetical protein
85	 56.19	0	65641..67482	+	613	119719003	-	Tpen_0085	-	D-fructose-6-phosphate amidotransferase
86	 58.20	0	67524..68657	+	377	119719004	-	Tpen_0086	-	sugar-phosphate nucleotidyl transferase
87	 53.33	0	68664..69788	+	374	119719005	-	Tpen_0087	-	glycosyl transferase family protein
88	 50.30	-1	69803..70297	-	164	119719006	-	Tpen_0088	-	hypothetical protein
89	 52.12	-1	70492..70656	-	54	119719007	-	Tpen_0089	-	hypothetical protein
90	 49.29	-1	70840..71190	+	116	119719008	-	Tpen_0090	-	helix-turn-helix domain-containing protein
91	 55.84	0	71159..72589	-	476	119719009	-	Tpen_0091	-	3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases-like
92	 50.85	-1	72603..73013	-	136	119719010	-	Tpen_0092	-	hypothetical protein
93	 55.85	0	73057..74619	-	520	119719011	-	Tpen_0093	-	putative thymidine phosphorylase
94	 58.54	0	74694..76538	+	614	119719012	-	Tpen_0094	-	aldehyde ferredoxin oxidoreductase
95	 53.25	0	76541..76771	+	76	119719013	-	Tpen_0095	-	thiamineS protein
96	 55.89	0	76839..77237	+	132	119719014	-	Tpen_0096	-	hypothetical protein
97	 53.90	0	77227..77649	+	140	119719015	-	Tpen_0097	-	hypothetical protein
98	 54.97	0	77609..78292	-	227	119719016	-	Tpen_0098	-	hypothetical protein
99	 55.47	0	78346..78747	-	133	119719017	-	Tpen_0099	-	hypothetical protein
100	 52.23	-1	78832..79392	+	186	119719018	-	Tpen_0100	-	peptidase, zinc-dependent
57.76	MEAN

5.29	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.