IslandPath Analysis: Escherichia coli CFT073



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 50.18   STD DEV: 5.55
Escherichia coli CFT073, complete genome - 1..5231428
5339 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	26245918	thrL	c5491	-	thr operon leader peptide
2	 46.03	0	534..911	+	125	26245919	-	c0002	-	hypothetical protein
3	 52.53	0	985..3510	+	841	26245920	thrA	c0003	-	bifunctional aspartokinase I/homeserine dehydrogenase I
4	 55.52	0	3512..4444	+	310	26245921	thrB	c0004	-	homoserine kinase
5	 52.76	0	4445..5731	+	428	26245922	thrC	c0005	-	threonine synthase
6	 40.67	-1	5799..5948	+	49	26245923	-	c0006	-	hypothetical protein
7	 53.87	0	5945..6241	+	98	26245924	yaaX	c0007	-	hypothetical protein
8	 53.41	0	6021..6269	-	82	26245925	-	c0008	-	hypothetical protein
9	 52.27	0	6060..6323	+	87	26245926	-	c0009	-	hypothetical protein
10	 48.65	0	6301..7077	-	258	26245927	yaaA	c0010	-	hypothetical protein
11	 53.46	0	7147..8577	-	476	26245928	yaaJ	c0011	-	putative transporter yaaJ
12	 51.99	0	8856..9809	+	317	161486342	talB	c0012	-	transaldolase B
13	 54.15	0	9921..10511	+	196	26245930	mogA	c0013	-	molybdenum cofactor biosynthesis protein
14	 52.73	0	10716..11282	-	188	26245932	yaaH	c0015	-	hypothetical protein
15	 50.98	0	11431..12144	-	237	26245933	yaaW	c0016	-	hypothetical protein
16	 47.65	0	12170..12574	-	134	26245934	yaaI	c0017	-	hypothetical protein
17	 50.91	0	12904..14940	-	678	26245935	-	c0018	-	putative glutamate dehydrogenase
18	 51.07	0	12946..14862	+	638	26245936	dnaK	c0019	-	molecular chaperone DnaK
19	 54.82	0	14951..16081	+	376	26245937	dnaJ	c0020	-	chaperone protein DnaJ
20	 40.03	-1	16953..17714	+	253	26245938	-	c0021	-	hypothetical protein
21	 44.77	0	17698..19227	+	509	26245939	-	c0022	-	hypothetical protein
22	 43.41	-1	19356..20615	+	419	26245940	-	c0023	-	hypothetical protein
23	 50.47	0	20850..22016	+	388	26245941	nhaA	c0024	-	pH-dependent sodium/proton antiporter
24	 47.44	0	22082..22981	+	299	161486341	nhaR	c0025	-	transcriptional activator NhaR
25	 41.86	-1	22948..23076	-	42	26245943	-	c0026	-	hypothetical protein
26	 46.21	0	23077..23340	-	87	26245944	rpsT	c0027	-	30S ribosomal protein S20
27	 48.86	0	23443..23661	+	72	26245945	yaaY	c0028	-	hypothetical protein
28	 52.87	0	23669..24610	+	313	26245946	ribF	c0029	-	bifunctional riboflavin kinase/FMN adenylyltransferase
29	 54.77	0	24653..27469	+	938	26245947	ileS	c0030	-	isoleucyl-tRNA synthetase
30	 52.32	0	27469..27963	+	164	26245948	lspA	c0031	-	lipoprotein signal peptidase
31	 54.44	0	28071..28520	+	149	26245949	slpA	c0032	-	FKBP-type 16 kDa peptidyl-prolyl cis-trans isomerase
32	 55.73	0	28522..29472	+	316	161486340	ispH	c0033	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
33	 44.54	-1	30475..30840	+	121	26245951	-	c0036	-	hypothetical protein
34	 53.28	0	31001..31822	+	273	26245952	dapB	c0037	-	dihydrodipicolinate reductase
35	 25.60	-2	31864..32031	-	55	26245953	-	c0038	-	hypothetical protein
36	 38.41	-2	32101..32238	+	45	26245954	-	c0039	-	hypothetical protein
37	 53.06	0	32251..33426	+	391	26245955	carA	c0040	-	carbamoyl phosphate synthase small subunit
38	 56.18	+1	33444..36665	+	1073	26245956	carB	c0041	-	carbamoyl phosphate synthase large subunit
39	 36.07	-2	36673..36891	-	72	26245957	-	c0042	-	hypothetical protein
40	 46.72	0	36926..37321	+	131	161486339	caiF	c0043	-	DNA-binding transcriptional activator CaiF
41	 55.07	0	37440..38051	-	203	26245959	caiE	c0044	-	carnitine operon protein CaiE
42	 52.80	0	38036..38929	-	297	26245960	caiD	c0045	-	carnitinyl-CoA dehydratase
43	 50.80	0	38930..40498	-	522	26245961	caiC	c0046	-	putative crotonobetaine/carnitine-CoA ligase
44	 52.46	0	40556..41773	-	405	26245962	caiB	c0047	-	crotonobetainyl-CoA:carnitine CoA-transferase
45	 53.46	0	41901..43043	-	380	26245963	caiA	c0048	-	crotonobetainyl-CoA dehydrogenase
46	 52.41	0	43074..44588	-	504	26245964	caiT	c0049	-	L-carnitine/gamma-butyrobetaine antiporter
47	 51.75	0	45061..45831	+	256	161486338	fixA	c0050	-	putative electron transfer flavoprotein FixA
48	 54.31	0	46809..48095	+	428	26245966	fixC	c0053	-	putative oxidoreductase FixC
49	 57.29	+1	48092..48379	+	95	26245967	fixX	c0054	-	ferredoxin-like protein
50	 53.60	0	48438..49769	+	443	26245968	yaaU	c0055	-	metabolite transporter
51	 54.43	0	49877..50407	+	176	26245969	yabF	c0056	-	glutathione-regulated potassium-efflux system ancillary protein KefF
52	 55.45	0	50400..52262	+	620	26245970	kefC	c0057	-	glutathione-regulated potassium-efflux system protein KefC
53	 52.20	0	52319..52933	+	204	26245971	folA	c0058	-	dihydrofolate reductase
54	 48.72	0	53019..53252	+	77	26245972	-	c0059	-	putative antitoxin of gyrase inhibiting toxin-antitoxin system
55	 46.03	0	53255..53569	+	104	26245973	-	c0060	-	putative toxin of gyrase inhibiting toxin-antitoxin system
56	 55.48	0	53566..54414	-	282	26245974	apaH	c0061	-	diadenosine tetraphosphatase
57	 51.98	0	54385..54738	+	117	26245975	-	c0062	-	hypothetical protein
58	 52.12	0	54421..54798	-	125	26245976	apaG	c0063	-	ApaG
59	 53.77	0	54801..55622	-	273	26245977	ksgA	c0064	-	dimethyladenosine transferase
60	 55.76	+1	55619..56608	-	329	26245978	pdxA	c0065	-	4-hydroxythreonine-4-phosphate dehydrogenase
61	 53.77	0	56608..57894	-	428	26245979	surA	c0066	-	peptidyl-prolyl cis-trans isomerase SurA
62	 51.72	0	57947..60301	-	784	26245980	imp	c0067	-	organic solvent tolerance protein
63	 52.45	0	60556..61371	+	271	161486337	djlA	c0068	-	DNA-J like membrane chaperone protein
64	 54.24	0	61489..62148	-	219	26245982	yabO	c0069	-	23S rRNA/tRNA pseudouridine synthase A
65	 55.07	0	62160..65066	-	968	26245983	hepA	c0070	-	ATP-dependent helicase HepA
66	 55.44	0	65231..67582	-	783	26245984	polB	c0071	-	DNA polymerase II
67	 46.08	0	67723..68232	+	169	26245985	-	c0072	-	transposase
68	 55.60	0	68369..69064	-	231	26245986	araD	c0073	-	L-ribulose-5-phosphate 4-epimerase
69	 55.22	0	69349..70851	-	500	26245987	araA	c0074	-	L-arabinose isomerase
70	 58.14	+1	70862..72562	-	566	26245988	araB	c0075	-	ribulokinase
71	 52.96	0	72901..73746	+	281	26245989	araC	c0076	-	DNA-binding transcriptional regulator AraC
72	 47.15	0	74011..74133	+	40	26245990	-	c0077	-	hypothetical protein
73	 34.18	-2	74258..74494	+	78	26245991	-	c0078	-	hypothetical protein
74	 33.51	-2	74536..75108	+	190	26245992	-	c0079	-	hypothetical protein
75	 31.21	-2	75115..75537	+	140	26245993	-	c0080	-	hypothetical protein
76	 54.77	0	75692..76456	+	254	26245994	yabI	c0081	-	hypothetical protein
77	 56.53	+1	76570..77289	-	239	26245995	thiQ	c0082	-	thiamine transporter ATP-binding subunit
78	 57.98	+1	77252..78862	-	536	26245996	thiP	c0083	-	thiamine transporter membrane protein
79	 51.83	0	78838..79821	-	327	161486336	tbpA	c0084	-	thiamine transporter substrate binding subunit
80	 55.34	0	79985..81661	-	558	26245998	yabN	c0085	-	transcriptional regulator SgrR
81	 46.27	0	82026..82535	+	169	26245999	-	c0086	-	transposase
82	 51.82	0	82679..83284	-	201	26246000	leuD	c0087	-	isopropylmalate isomerase small subunit
83	 52.69	0	82730..82915	+	61	26246001	-	c0088	-	hypothetical protein
84	 55.60	0	83295..84695	-	466	26246002	leuC	c0089	-	isopropylmalate isomerase large subunit
85	 54.85	0	84698..85789	-	363	161486335	leuB	c0090	-	3-isopropylmalate dehydrogenase
86	 52.91	0	85789..87402	-	537	26246004	leuA	c0091	-	2-isopropylmalate synthase
87	 47.13	0	87451..87537	-	28	26246005	leuL	c5492	-	leu operon leader peptide
88	 30.08	-2	87996..88118	+	40	26246006	-	c0092	-	hypothetical protein
89	 46.21	0	88177..89139	+	320	161486334	leuO	c0093	-	leucine transcriptional activator
90	 24.81	-2	89175..89303	-	42	26246008	-	c0094	-	hypothetical protein
91	 53.16	0	89457..91181	+	574	161486333	ilvI	c0095	-	acetolactate synthase 3 catalytic subunit
92	 50.00	0	91184..91675	+	163	161486332	ilvH	c0096	-	acetolactate synthase 3 regulatory subunit
93	 45.98	0	91687..91773	+	28	26246011	fruL	c5493	-	hypothetical protein
94	 39.39	-1	91727..91858	+	43	26246012	-	c0097	-	hypothetical protein
95	 55.12	0	91855..92859	+	334	26246013	fruR	c0098	-	DNA-binding transcriptional regulator FruR
96	 52.73	0	93425..93919	+	164	26246014	yabB	c0099	-	cell division protein MraZ
97	 55.31	0	93921..94862	+	313	26246015	mraW	c0100	-	S-adenosyl-methyltransferase MraW
98	 50.55	0	94859..95224	+	121	26246016	ftsL	c0101	-	cell division protein FtsL
99	 53.71	0	95240..97006	+	588	26246017	ftsI	c0102	-	peptidoglycan synthetase ftsI precursor
100	 57.06	+1	96993..98480	+	495	26246018	murE	c0103	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
50.18	MEAN

5.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.