IslandPath Analysis: Vibrio cholerae O395



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.24   STD DEV: 4.66
Vibrio cholerae O395 chromosome 1, complete sequence - 1..1108250
1133 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 50.33	0	15..1373	+	452	147671835	glpT	VC0395_0001	-	sn-glycerol-3-phosphate transporter
2	 47.19	0	1527..2594	+	355	147672362	glpQ	VC0395_0002	-	glycerophosphodiester phosphodiesterase
3	 49.49	0	2647..3327	-	226	147671726	-	VC0395_0003	-	putative cyclic nucleotide binding protein
4	 50.55	0	3467..4198	-	243	147671999	udp-2	VC0395_0004	-	uridine phosphorylase
5	 46.26	0	4195..4929	-	244	147671650	pnuC	VC0395_0005	-	pnuC protein
6	 49.75	0	5055..6059	-	334	147671890	rbsR	VC0395_0006	-	ribose operon repressor
7	 50.49	0	6070..6990	-	306	147671538	rbsK	VC0395_0007	-	ribokinase
8	 51.07	+1	7129..8013	-	294	147671798	rbsB	VC0395_0008	-	D-ribose transporter subunit RbsB
9	 50.36	0	8068..9036	-	322	147672299	rbsC	VC0395_0009	-	ribose ABC transporter permease protein
10	 49.90	0	9066..10568	-	500	147671783	rbsA	VC0395_0010	-	D-ribose transporter ATP binding protein
11	 47.13	0	10595..11065	-	156	147672264	rbsD	VC0395_0011	-	D-ribose pyranase
12	 45.59	0	11298..11558	+	86	147672208	-	VC0395_0012	-	putative lipoprotein
13	 34.15	-2	11706..12074	-	122	147671565	-	VC0395_0013	-	hypothetical protein
14	 47.05	0	12071..15124	-	1017	147671421	vgrG-3	VC0395_0014	-	vgrG protein
15	 49.29	0	15377..16642	-	421	147672179	-	VC0395_0015	-	hypothetical protein
16	 48.40	0	16690..19716	-	1008	147671876	-	VC0395_0016	-	hypothetical protein
17	 47.70	0	19706..20227	-	173	147672059	-	VC0395_0017	-	IcmF-related protein
18	 51.42	+1	20243..21652	-	469	147672276	-	VC0395_0018	-	hypothetical protein
19	 54.24	+1	21662..22345	-	227	147671784	-	VC0395_0019	-	hypothetical protein
20	 51.10	+1	22315..23907	-	530	147671674	-	VC0395_0020	-	sigma-54 dependent transcriptional regulator
21	 50.96	+1	23910..26519	-	869	147672171	clpB-2	VC0395_0021	-	clpB protein
22	 48.58	0	26545..27318	-	257	147671772	-	VC0395_0022	-	hypothetical protein
23	 52.08	+1	27321..27800	-	159	147672311	-	VC0395_0023	-	hypothetical protein
24	 52.21	+1	27752..28657	-	301	147671947	-	VC0395_0024	-	hypothetical protein
25	 46.96	0	28664..29140	-	158	147671491	-	VC0395_0025	-	putative lipoprotein
26	 49.60	0	29143..30630	-	495	147671976	-	VC0395_0026	-	hypothetical protein
27	 51.26	+1	30633..31586	-	317	147671686	-	VC0395_0027	-	hypothetical protein
28	 47.97	0	31613..33382	-	589	147672162	-	VC0395_0028	-	hypothetical protein
29	 46.95	0	33388..33813	-	141	147671801	-	VC0395_0029	-	hypothetical protein
30	 47.13	0	33816..35294	-	492	147672284	-	VC0395_0030	-	hypothetical protein
31	 47.44	0	35335..35646	-	103	147671915	-	VC0395_0031	-	hypothetical protein
32	 48.02	0	35666..35842	-	58	147672397	-	VC0395_0032	-	hypothetical protein
33	 46.47	0	36274..37194	-	306	147672189	-	VC0395_0033	-	hypothetical protein
34	 54.74	+1	37262..37546	-	94	147671407	-	VC0395_0034	-	hypothetical protein
35	 47.45	0	39332..39997	+	221	147672092	rluA-2	VC0395_0035	-	ribosomal large subunit pseudouridine synthase A
36	 51.04	+1	40039..41817	-	592	147671884	-	VC0395_0036	-	sulfate permease family protein
37	 48.33	0	41998..42657	+	219	147672516	-	VC0395_0037	-	haloacid dehalogenase/epoxide hydrolase family protein
38	 44.51	0	42833..44389	+	518	147671764	-	VC0395_0038	-	hypothetical protein
39	 49.19	0	44389..44760	+	123	147671576	pspE	VC0395_0039	-	phage shock protein E
40	 49.86	0	44797..45837	-	346	147671842	-	VC0395_0040	-	Gfo/Idh/MocA family oxidoreductase
41	 47.78	0	45868..47175	-	435	147672331	pncB	VC0395_0041	-	nicotinate phosphoribosyltransferase
42	 49.09	0	47574..48290	+	238	147671694	-	VC0395_0042	-	hypothetical protein
43	 46.41	0	48303..49526	-	407	147672107	-	VC0395_0043	-	hypothetical protein
44	 47.07	0	49569..50267	-	232	147672338	-	VC0395_0044	-	hypothetical protein
45	 42.02	0	50536..50892	-	118	147672104	-	VC0395_0045	-	hypothetical protein
46	 41.38	-1	51120..51293	-	57	147671629	-	VC0395_0046	-	hypothetical protein
47	 45.40	0	51393..52022	+	209	147671916	-	VC0395_0047	-	hypothetical protein
48	 45.10	0	52052..52204	+	50	147671777	-	VC0395_0049	-	hypothetical protein
49	 46.13	0	52193..52489	-	98	147672099	-	VC0395_0048	-	hypothetical protein
50	 51.34	+1	52719..53612	+	297	147671653	-	VC0395_0050	-	hypothetical protein
51	 37.98	-1	53712..53840	-	42	147671693	-	VC0395_0051	-	hypothetical protein
52	 48.92	0	53877..55178	+	433	147672327	-	VC0395_0052	-	proton/glutamate symporter
53	 38.18	-1	55307..55471	-	54	147671839	-	VC0395_0053	-	hypothetical protein
54	 45.67	0	55545..55925	-	126	147672477	-	VC0395_0054	-	hypothetical protein
55	 46.63	0	56026..57228	-	400	147671678	-	VC0395_0055	-	hypothetical protein
56	 47.65	0	57408..57854	+	148	147672033	soxR	VC0395_0056	-	soxR protein
57	 48.93	0	57896..59107	-	403	147672367	emrD-1	VC0395_0057	-	multidrug resistance protein D
58	 48.54	0	59197..60084	+	295	147672172	-	VC0395_0058	-	LysR family transcriptional regulator
59	 43.63	0	60352..62187	+	611	147672425	-	VC0395_0059	-	GGDEF family protein
60	 47.80	0	62289..63581	-	430	147671781	-	VC0395_0060	-	hypothetical protein
61	 41.44	-1	63773..64105	-	110	147672527	-	VC0395_0061	-	hypothetical protein
62	 49.58	0	64410..66071	+	553	147671888	-	VC0395_0062	-	sulfate permease family protein
63	 48.80	0	66507..67883	+	458	147671577	-	VC0395_0063	-	hypothetical protein
64	 41.24	-1	68174..68641	+	155	147671413	-	VC0395_0064	-	hypothetical protein
65	 44.87	0	68638..69738	+	366	147672035	-	VC0395_0065	-	GGDEF family protein
66	 47.09	0	69785..70540	-	251	147671521	pstB-2	VC0395_0066	-	phosphate ABC transporter, ATP-binding protein
67	 47.93	0	70569..71438	-	289	147672503	pstA-2	VC0395_0067	-	phosphate ABC transporter, permease protein
68	 50.30	0	71438..72421	-	327	147672465	pstC-2	VC0395_0068	-	phosphate ABC transporter, permease protein
69	 45.22	0	72436..73335	-	299	147671713	pstS	VC0395_0069	-	phosphate ABC transporter, periplasmic phosphate-binding protein
70	 48.48	0	73628..75271	+	547	147671767	-	VC0395_0070	-	methyl-accepting chemotaxis protein
71	 52.41	+1	75405..75965	-	186	147672139	-	VC0395_0071	-	hypothetical protein
72	 50.66	0	75962..77404	-	480	147671952	-	VC0395_0072	-	putative lipoprotein
73	 50.33	0	77401..79707	-	768	147672272	-	VC0395_0073	-	hypothetical protein
74	 50.56	0	79717..81858	-	713	147671724	hutR	VC0395_0074	-	heme receptor HutR
75	 50.85	0	81858..83855	-	665	147672486	ptrB	VC0395_0075	-	protease II
76	 47.98	0	84068..85426	-	452	147671861	-	VC0395_0076	-	DEAD-box ATP dependent DNA helicase
77	 41.33	-1	85472..85621	-	49	147671472	-	VC0395_0077	-	hypothetical protein
78	 45.00	0	85846..86205	+	119	147672231	lpp	VC0395_0078	-	major outer membrane lipoprotein
79	 47.77	0	86291..87211	-	306	147671464	-	VC0395_0079	-	hypothetical protein
80	 51.13	+1	87220..88629	-	469	147672153	phrB-2	VC0395_0080	-	deoxyribodipyrimidine photolyase, cyclobutane pyrimidine dimer-specific
81	 50.38	0	88639..89436	-	265	147671661	-	VC0395_0081	-	MerR family transcriptional regulator
82	 48.09	0	89426..90394	-	322	147672017	-	VC0395_0082	-	hypothetical protein
83	 46.88	0	90674..91411	+	245	147672088	deoD-2	VC0395_0083	-	purine nucleoside phosphorylase
84	 50.16	0	91383..92945	+	520	147672075	-	VC0395_0084	-	hypothetical protein
85	 49.01	0	93064..94581	+	505	147671462	-	VC0395_0085	-	hypothetical protein
86	 48.13	0	94562..96142	+	526	147672243	-	VC0395_0086	-	GGDEF family protein
87	 43.33	0	96277..96666	+	129	147672352	-	VC0395_0087	-	hypothetical protein
88	 49.51	0	96666..97796	+	376	147672478	-	VC0395_0088	-	hypothetical protein
89	 48.97	0	97991..101245	-	1084	147671883	-	VC0395_0089	-	tricorn protease
90	 48.42	0	101478..101762	-	94	147672316	-	VC0395_0090	-	hypothetical protein
91	 46.64	0	101894..102652	+	252	147671554	-	VC0395_0091	-	hypothetical protein
92	 46.13	0	102731..103957	-	408	147672016	-	VC0395_0092	-	sodium/glutamate symporter
93	 40.17	-1	104155..104271	-	38	147671647	-	VC0395_0093	-	hypothetical protein
94	 48.11	0	104482..105408	+	308	147671547	-	VC0395_0094	-	hypothetical protein
95	 49.41	0	105607..106029	+	140	147672210	-	VC0395_0095	-	hypothetical protein
96	 45.70	0	106026..106607	+	193	147672521	-	VC0395_0096	-	SCO1/SenC family protein
97	 47.24	0	106621..107073	+	150	147671906	-	VC0395_0097	-	hypothetical protein
98	 48.85	0	107415..108632	+	405	147671687	-	VC0395_0098	-	serine/threonine transporter SstT
99	 47.52	0	108686..109510	-	274	147672116	-	VC0395_0099	-	putative phosphatidylglycerophosphatase B
100	 46.85	0	109626..110498	+	290	147671877	-	VC0395_0100	-	hypothetical protein
46.24	MEAN

4.66	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.