IslandPath Analysis: Clostridium botulinum E3 str. Alaska E43



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.92   STD DEV: 3.61
Clostridium botulinum E3 str. Alaska E43, complete genome - 1..3659644
3256 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.01	0	127..1497	+	456	188589439	dnaA	CLH_0001	-	chromosomal replication initiator protein DnaA
2	 26.79	0	1758..2858	+	366	188587627	dnaN	CLH_0002	-	DNA polymerase III, beta subunit
3	 25.12	0	2897..3103	+	68	188588344	yaaA	CLH_0003	-	S4 domain protein YaaA
4	 24.77	0	3175..4260	+	361	188590699	-	CLH_0004	-	DNA replication and repair protein RecF
5	 26.82	0	4275..4535	+	86	188589365	-	CLH_0005	-	hypothetical protein
6	 31.39	0	4571..6478	+	635	188588443	gyrB	CLH_0006	-	DNA gyrase, B subunit
7	 29.80	0	6501..9050	+	849	188587904	gyrA	CLH_0007	-	DNA gyrase, A subunit
8	 20.83	-1	14633..15136	+	167	188588820	-	CLH_0014	-	putative HD domain
9	 24.56	0	15175..15687	+	170	188589343	-	CLH_0015	-	3H domain protein
10	 25.72	0	15700..17091	+	463	188588637	-	CLH_0016	-	FAD-dependent oxidoreductase
11	 25.74	0	17110..17346	+	78	188587965	-	CLH_0017	-	hypothetical protein
12	 30.67	0	17662..18939	+	425	188588464	serS	CLH_0018	-	seryl-tRNA synthetase
13	 24.31	0	20253..20762	+	169	188588138	-	CLH_0023	-	acetyltransferase, gnat family
14	 26.39	0	20801..24259	+	1152	188588814	addB	CLH_0024	-	ATP-dependent nuclease subunit B
15	 26.05	0	24285..28019	+	1244	188589987	addA	CLH_0025	-	recombination helicase AddA
16	 22.66	-1	28301..29452	-	383	188590689	-	CLH_0026	-	ErfK/YbiS/YcfS/YnhG family protein
17	 22.35	-1	29608..30417	+	269	188588427	-	CLH_0027	-	hypothetical protein
18	 30.17	0	30475..31644	-	389	188589244	-	CLH_0028	-	sodium:dicarboxylate symporter family protein
19	 22.85	-1	31981..32877	+	298	188590164	-	CLH_0029	-	sensory box histidine kinase
20	 22.63	-1	33324..34463	+	379	188587836	-	CLH_0031	-	hypothetical protein
21	 25.59	0	34609..35499	-	296	188587735	psd	CLH_0032	-	phosphatidylserine decarboxylase
22	 27.43	0	35661..36236	+	191	188590357	-	CLH_0033	-	transcriptional regulator, TetR family
23	 31.77	+1	36549..38279	+	576	188588322	-	CLH_0034	-	hydrogenase-1
24	 24.97	0	38556..39344	+	262	188589019	-	CLH_0035	-	HAD-superfamily hydrolase
25	 30.76	0	39492..41087	-	531	188588712	-	CLH_0036	-	ABC transporter, ATP-binding protein
26	 30.52	0	41578..42891	+	437	188589253	-	CLH_0037	-	sodium:neurotransmitter symporter family protein
27	 24.03	-1	43066..43194	+	42	188588053	-	CLH_0038	-	hypothetical protein
28	 21.47	-1	43383..43559	+	58	188587796	-	CLH_0039	-	hypothetical protein
29	 28.70	0	43571..44218	-	215	188589054	-	CLH_0040	-	hemolysin-3
30	 22.34	-1	44439..45020	+	193	188588299	-	CLH_0041	-	hypothetical protein
31	 26.57	0	45021..46721	+	566	188587858	-	CLH_0042	-	isopentenyl-diphosphate delta-isomerase
32	 22.26	-1	47187..47972	+	261	188589120	-	CLH_0043	-	hypothetical protein
33	 28.76	0	48380..49735	-	451	188590111	-	CLH_0044	-	membrane protein
34	 27.08	0	49985..51679	+	564	188587949	-	CLH_0045	-	methyl-accepting chemotaxis sensory transducer
35	 30.49	0	51852..52661	+	269	188589662	proB	CLH_0046	-	glutamate 5-kinase
36	 31.57	+1	52678..53922	+	414	188590471	proA	CLH_0047	-	glutamate-5-semialdehyde dehydrogenase
37	 25.17	0	54052..54492	+	146	188590642	-	CLH_0048	-	acetyltransferase
38	 23.08	-1	54838..55344	+	168	188588024	-	CLH_0049	-	bacterial membrane flanked domain family
39	 22.20	-1	55322..56749	+	475	188588362	-	CLH_0050	-	putative bacterial membrane flanked domain family
40	 27.50	0	56976..57746	+	256	188589300	-	CLH_0051	-	short chain dehydrogenase
41	 25.58	0	58130..58942	+	270	188588815	-	CLH_0052	-	HAD superfamily hydrolase
42	 26.06	0	59038..60495	+	485	188590375	-	CLH_0053	-	putative methyl-accepting chemotaxis protein
43	 30.48	0	60868..61917	+	349	188587992	carA	CLH_0054	-	carbamoyl-phosphate synthase, small subunit
44	 30.97	0	61932..65141	+	1069	188588895	carB	CLH_0055	-	carbamoyl-phosphate synthase, large subunit
45	 27.03	0	65185..66294	-	369	188588943	-	CLH_0056	-	HD-GYP hydrolase domain containing protein
46	 28.10	0	66577..68469	-	630	188590299	-	CLH_0057	-	glutamine synthetase
47	 27.54	0	68787..69563	+	258	188587547	murI	CLH_0058	-	glutamate racemase
48	 33.14	+1	69704..70228	+	174	188588453	-	CLH_0059	-	peptidyl-prolyl cis-trans isomerase
49	 29.81	0	70407..70775	+	122	188589749	-	CLH_0060	-	hypothetical protein
50	 27.50	0	70777..71445	+	222	188590670	-	CLH_0061	-	DNA-binding protein
51	 31.83	+1	71609..75205	+	1198	188588216	-	CLH_0062	-	subtilisin like protease
52	 30.48	0	75295..76626	+	443	188588622	-	CLH_0063	-	spore cortex-lytic enzyme
53	 28.48	0	76667..77572	-	301	188587854	-	CLH_0064	-	radical SAM domain protein
54	 26.72	0	77724..78782	-	352	188588722	-	CLH_0065	-	transporter
55	 27.08	0	78917..79987	+	356	188589590	-	CLH_0066	-	putative lipoprotein
56	 29.93	0	80080..81018	+	312	188590566	-	CLH_0067	-	radical SAM protein, family
57	 27.48	0	81019..81735	+	238	188588175	-	CLH_0068	-	2-phosphosulfolactate phosphatase
58	 28.55	0	81760..82950	-	396	188589114	-	CLH_0069	-	PUA domain containing protein
59	 26.67	0	83498..83707	-	69	188590159	-	CLH_0070	-	hypothetical protein
60	 25.44	0	84214..84897	+	227	188587672	-	CLH_0071	-	DNA-binding response regulator
61	 24.79	0	84903..86189	+	428	188590055	-	CLH_0072	-	sensor histidine kinase
62	 25.76	0	86484..87170	+	228	188590233	-	CLH_0073	-	VTC domain superfamily
63	 26.67	0	87205..87894	+	229	188589557	-	CLH_0074	-	tubulin/FtsZ, GTPase
64	 28.26	0	88011..90119	+	702	188589185	-	CLH_0075	-	CotH protein
65	 30.66	0	90401..92380	+	659	188588720	-	CLH_0076	-	2', 3'-cuclic nucleotide 2'-phosphodiesterase
66	 18.70	-2	92583..92705	+	40	188587779	-	CLH_0077	-	hypothetical protein
67	 31.50	0	93183..96293	+	1036	188589689	ileS	CLH_0078	-	isoleucyl-tRNA synthetase
68	 28.63	0	96400..97398	+	332	188588416	-	CLH_0079	-	catabolite control protein A
69	 22.54	-1	97693..98118	+	141	188587703	-	CLH_0080	-	putative viral A-type inclusion protein
70	 28.04	0	98244..99623	+	459	188589856	-	CLH_0081	-	mate efflux family protein
71	 24.19	-1	99677..99862	-	61	188588812	-	CLH_0082	-	hypothetical protein
72	 30.56	0	99972..100547	+	191	188590546	-	CLH_0083	-	hypothetical protein
73	 27.65	0	100563..101090	+	175	188588219	-	CLH_0084	-	hypothetical protein
74	 25.23	0	101195..101527	+	110	188588730	-	CLH_0085	-	hypothetical protein
75	 26.75	0	101701..103311	+	536	188589718	-	CLH_0086	-	ABC1 family protein kinase
76	 32.17	+1	103872..105590	+	572	188589417	-	CLH_0087	-	Na+/H+ antiporter family family
77	 28.49	0	106001..107776	+	591	188590364	-	CLH_0088	-	Xaa-Pro aminopeptidase 1
78	 28.71	0	107848..108345	-	165	188587574	-	CLH_0089	-	hypothetical protein
79	 25.94	0	108445..109851	+	468	188588469	-	CLH_0090	-	AAA superfamily ATPase with N- receiver domain
80	 30.19	0	109978..110901	+	307	188589558	-	CLH_0091	-	hydrolase, alpha/beta fold family
81	 38.16	+2	111358..112062	+	234	188590525	-	CLH_0092	-	glycerol uptake facilitator protein
82	 33.33	+1	112175..113170	+	331	188589551	dhaK	CLH_0093	-	dihydroxyacetone kinase, DhaK subunit
83	 30.83	0	113198..113836	+	212	188590334	-	CLH_0094	-	dihydroxyacetone kinase, L subunit
84	 32.05	+1	113839..114228	+	129	188587620	-	CLH_0095	-	dihydroxyacetone kinase, phosphotransfer subunit
85	 30.39	0	114812..116749	+	645	188588457	metG	CLH_0096	-	methionyl-tRNA synthetase
86	 26.07	0	117053..117850	+	265	188589859	-	CLH_0097	-	putative deoxyribonuclease
87	 32.95	+1	118133..119179	+	348	188590715	-	CLH_0098	-	3D/G5 domain protein
88	 28.83	0	119347..119901	+	184	188589065	-	CLH_0099	-	putative primase homolog
89	 27.00	0	119905..120756	+	283	188588306	ksgA	CLH_0100	-	dimethyladenosine transferase
90	 27.63	0	120949..122385	+	478	188590309	-	CLH_0101	-	hypothetical protein
91	 25.79	0	122396..122965	+	189	188589845	-	CLH_0102	-	hypothetical protein
92	 28.46	0	123063..123821	+	252	188588100	lgt	CLH_0103	-	prolipoprotein diacylglyceryl transferase
93	 24.94	0	123822..124655	+	277	188588373	-	CLH_0104	-	putative lipoprotein
94	 31.67	+1	124671..125513	+	280	188589582	-	CLH_0105	-	Mrp protein
95	 37.57	+2	125580..125768	+	62	188590707	-	CLH_0106	-	hypothetical protein
96	 30.97	0	125928..126605	-	225	188588380	-	CLH_0107	-	probable proton-coupled thiamine transporter YuaJ
97	 23.19	-1	126861..127067	-	68	188588824	-	CLH_0108	-	hypothetical protein
98	 24.72	0	127240..127692	-	150	188589983	-	CLH_0109	-	transcriptional regulator, PadR family
99	 29.68	0	127694..128542	-	282	188590171	-	CLH_0110	-	DegV family protein
100	 30.20	0	128841..130946	+	701	188589097	nrdD	CLH_0111	-	anaerobic ribonucleoside-triphosphate reductase
27.92	MEAN

3.61	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.