IslandPath Analysis: Bifidobacterium longum NCC2705



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 60.24   STD DEV: 4.37
Bifidobacterium longum NCC2705, complete genome - 1..2256640
1727 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 56.67	0	49..288	+	79	23464629	cspA	BL0001	-	cold shock protein
2	 63.84	0	526..2151	+	541	23464630	groEL	BL0002	-	chaperonin GroEL
3	 60.82	0	2248..2538	-	96	23464631	-	BL0003	-	hypothetical protein
4	 53.16	-1	2613..3419	+	268	23464632	-	BL0004	-	hypothetical protein
5	 58.06	0	3412..4143	+	243	23464633	-	BL0005	-	response regulator of two-component system
6	 59.81	0	4315..6165	+	616	23464634	-	BL0006	-	histidine kinase sensor of two-component system
7	 62.05	0	6235..6624	+	129	23464635	cspB	BL0007	-	cold shock protein
8	 59.51	0	6633..7820	+	395	23464636	-	BL0008	-	hypothetical protein
9	 63.56	0	7932..8897	-	321	23464637	-	BL0009	-	hypothetical protein
10	 62.72	0	9047..11656	+	869	23464638	clpC	BL0010	-	protease
11	 57.50	0	11836..13155	-	439	23464639	codA	BL0011	-	cytosine deaminase
12	 57.35	0	13298..14800	+	500	23464640	-	BL0012	-	hypothetical protein
13	 59.84	0	14990..16366	+	458	23464641	proP	BL0013	-	proline/betaine transporter
14	 61.79	0	16452..17210	+	252	23464642	-	BL0014	-	creatinine amidohydrolase; creatininase
15	 59.92	0	17382..19175	+	597	23464643	-	BL0015	-	5'-nucleotidase family protein
16	 64.54	0	19381..20841	-	486	23464644	-	BL0016	-	hypothetical protein
17	 63.10	0	20941..22341	+	466	23464645	hisS	BL0017	-	histidyl-tRNA synthetase
18	 63.61	0	22377..24176	+	599	23464646	aspS	BL0018	-	aspartyl-tRNA synthetase
19	 52.57	-1	24634..25740	-	368	23464647	-	BL0019	-	hypothetical protein
20	 57.22	0	25746..26105	+	119	23464648	-	BL0020	-	hypothetical protein
21	 61.76	0	26169..26984	+	271	23464649	gluA	BL0021	-	ATP-binding protein of ABC transporter for glutamate
22	 61.92	0	27055..27855	+	266	23464650	gluB	BL0022	-	glutamate-binding protein of ABC transporter system
23	 60.18	0	27855..28532	+	225	23464651	gluC	BL0023	-	permease protein of ABC transporter for glutamate
24	 64.76	+1	28538..29638	+	366	23464652	gluD	BL0024	-	permease protein of ABC transporter for glutamate
25	 61.87	0	29727..31268	+	513	23464653	-	BL0025	-	hypothetical protein
26	 50.78	-2	31813..32133	+	106	23464654	-	BL0026	-	hypothetical protein
27	 59.01	0	32346..33272	+	308	23464655	-	BL0027	-	hypothetical protein
28	 60.98	0	33406..35973	+	855	23464656	-	BL0028	-	DEAD box-like helicase
29	 61.96	0	36056..37435	+	459	23464657	-	BL0029	-	recombination factor protein RarA
30	 58.78	0	37493..38215	+	240	23464658	-	BL0030	-	response regulator of two-component system
31	 57.13	0	38212..39909	+	565	23464659	-	BL0031	-	histidine kinase sensor of two-component system
32	 58.12	0	39906..41636	+	576	23464660	-	BL0032	-	hypothetical protein
33	 58.64	0	41952..42935	+	327	23464661	-	BL0033	-	sugar ABC transporter solute-binding protein
34	 57.20	0	43076..44617	+	513	23464662	-	BL0034	-	ATP binding protein of ABC transporter
35	 57.42	0	44619..45689	+	356	23464663	-	BL0035	-	ABC transporter permease
36	 58.85	0	45686..46708	+	340	23464664	-	BL0036	-	sugar ABC transporter permease
37	 58.57	0	46931..48388	-	485	23464665	-	BL0037	-	efflux-type transporter
38	 59.98	0	48777..49673	+	298	23464666	-	BL0038	-	hypothetical protein
39	 56.40	0	49777..50292	+	171	23464667	-	BL0039	-	hypothetical protein
40	 64.82	+1	50643..51293	-	216	23464668	-	BL0040	-	hypothetical protein
41	 57.38	0	51370..51735	+	121	23464669	-	BL0041	-	hypothetical protein
42	 57.68	0	51834..52178	-	114	23464670	-	BL0042	-	hypothetical protein
43	 62.72	0	52211..54643	-	810	23464671	-	BL0043	-	fused ATP binding protein and permease of ABC transporter
44	 60.40	0	54774..55427	-	217	23464672	-	BL0044	-	hypothetical protein
45	 60.40	0	55688..56692	+	334	23464673	-	BL0045	-	glycosyltransferase
46	 59.80	0	56734..57519	-	261	23464674	-	BL0046	-	hypothetical protein
47	 60.42	0	57764..58531	+	255	23464675	ppgK	BL0047	-	polyphosphate glucokinase
48	 60.79	0	58756..60015	+	419	23464676	-	BL0048	-	aminotransferase
49	 58.91	0	60024..60848	+	274	23464677	-	BL0049	-	ATP binding protein of ABC transporter
50	 61.49	0	60835..63132	-	765	23464678	-	BL0050	-	hypothetical protein
51	 61.60	0	63263..66817	+	1184	23464679	-	BL0051	-	hypothetical protein
52	 63.77	0	66882..69644	+	920	23464680	ligA	BL0052	-	LigA
53	 64.96	+1	69820..70935	+	371	23464681	mrp	BL0053	-	hypothetical protein
54	 53.64	-1	71209..72129	-	306	23464682	-	BL0054	-	hypothetical protein
55	 60.42	0	72657..73472	+	271	23464683	-	BL0055	-	sugar permease of ABC transporter system
56	 60.67	0	73583..75718	+	711	23464684	-	BL0056	-	beta-hexosaminidase A
57	 63.23	0	76721..77680	+	319	23464685	-	BL0058	-	butyryl-CoA dehydrogenase
58	 65.68	+1	77859..78968	+	369	23464686	-	BL0059	-	hypothetical protein
59	 59.76	0	79020..79265	+	81	23464687	-	BL0060	-	hypothetical protein
60	 56.57	0	79335..80225	-	296	23464688	-	BL0061	-	TetR-type transcriptional regulator
61	 58.38	0	80336..80878	+	180	23464689	-	BL0062	-	hypothetical protein
62	 62.67	0	80905..81705	-	266	23464690	-	BL0063	-	hypothetical protein
63	 67.68	+1	81702..82490	-	262	23464691	-	BL0064	-	ATP binding protein of ABC transporter
64	 60.85	0	82595..83161	+	188	23464692	efp	BL0065	-	elongation factor P
65	 61.26	0	83216..83788	+	190	23464693	nusB	BL0066	-	NusB antitermination protein
66	 62.75	0	83979..85202	+	407	23464694	carA	BL0067	-	carbamoyl phosphate synthase small subunit
67	 64.30	0	85204..88587	+	1127	23464695	carB	BL0068	-	hypothetical protein
68	 60.80	0	88587..89507	+	306	23464696	-	BL0069	-	orotidine 5'-phosphate decarboxylase
69	 63.79	0	89687..90277	+	196	23464697	-	BL0070	-	guanylate kinase
70	 60.88	0	90279..90986	-	235	23464698	dnaQ	BL0071	-	exonuclease
71	 62.19	0	91133..93388	+	751	23464699	-	BL0072	-	hypothetical protein
72	 59.50	0	93397..93954	-	185	23464700	-	BL0073	-	phospholipase/carboxylesterase
73	 55.82	-1	94189..94935	+	248	23464701	-	BL0074	-	permease protein of ABC transporter system
74	 58.07	0	94922..95596	+	224	23464702	-	BL0075	-	permease of ABC transporter system for amino acids
75	 59.60	0	95589..96380	+	263	23464703	gltL	BL0076	-	ATP binding protein of ABC transporter for glutamate/aspartate
76	 60.02	0	96446..97348	+	300	23464704	-	BL0077	-	solute-binding protein for glutamate/aspartate ABC transporter system
77	 60.21	0	97584..98822	+	412	23464705	metC	BL0078	-	cystathionine beta-lyase
78	 59.92	0	99066..99317	+	83	23464706	-	BL0079	-	hypothetical protein
79	 57.45	0	100832..101200	-	122	23464707	-	BL0081	-	hypothetical protein
80	 49.53	-2	101281..101811	-	176	23464708	-	BL0082	-	hypothetical protein
81	 66.30	+1	101827..102096	+	89	23464709	-	BL0083	-	hypothetical protein
82	 59.67	0	102256..103155	+	299	23464710	-	BL0084	-	hypothetical protein
83	 58.97	0	103222..104052	-	276	23464711	-	BL0085	-	hypothetical protein
84	 59.25	0	104196..104990	-	264	23464712	murI	BL0086	-	glutamate racemase
85	 61.57	0	105149..105991	+	280	23464713	dapF	BL0087	-	diaminopimelate epimerase
86	 61.25	0	105997..106734	-	245	23464714	-	BL0088	-	hypothetical protein
87	 59.51	0	106872..107765	+	297	23464715	-	BL0089	-	hypothetical protein
88	 59.34	0	107920..108192	-	90	23464716	-	BL0090	-	hypothetical protein
89	 62.32	0	108199..109854	-	551	23464717	-	BL0091	-	hypothetical protein
90	 61.46	0	110000..111574	+	524	23464718	-	BL0092	-	DNA helicase II
91	 62.83	0	111644..113389	-	581	23464719	-	BL0093	-	hypothetical protein
92	 61.90	0	113610..114491	+	293	23464720	-	BL0094	-	hypothetical protein
93	 62.83	0	114607..115023	+	138	23464721	-	BL0095	-	hypothetical protein
94	 60.33	0	115492..117195	+	567	23464722	-	BL0096	-	hypothetical protein
95	 62.05	0	117192..118382	+	396	23464723	ispC	BL0097	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
96	 63.70	0	118391..119602	+	403	23464724	ispG	BL0098	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
97	 58.91	0	119657..121435	+	592	23464725	-	BL0099	-	hypothetical protein
98	 59.72	0	121485..122204	+	239	23464726	recO	BL0100	-	DNA repair protein RecO
99	 59.12	0	122201..122995	+	264	23464727	uppS	BL0101	-	undecaprenyl pyrophosphate synthetase
100	 56.36	0	123151..124353	-	400	23464728	-	BL0102	-	inosine-uridine preferring nucleoside hydrolase
60.24	MEAN

4.37	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.