IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.18   STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.78	0	223..1608	+	461	157959831	-	Spea_0001	-	chromosomal replication initiation protein
2	 45.50	0	1628..2728	+	366	157959832	-	Spea_0002	-	DNA polymerase III, beta subunit
3	 43.03	0	2849..3931	+	360	157959833	-	Spea_0003	-	DNA replication and repair protein RecF
4	 44.80	0	3924..6365	+	813	157959834	-	Spea_0004	-	DNA gyrase, B subunit
5	 44.60	0	6442..7506	+	354	157959835	-	Spea_0005	-	metal dependent phosphohydrolase
6	 46.14	0	7582..9651	-	689	157959836	-	Spea_0006	-	glycyl-tRNA synthetase subunit beta
7	 47.22	0	9663..10526	-	287	157959837	-	Spea_0007	-	glycyl-tRNA synthetase subunit alpha
8	 41.00	-1	10686..11246	+	186	157959838	-	Spea_0008	-	DNA-3-methyladenine glycosylase I
9	 39.19	-1	11265..11930	-	221	157959839	-	Spea_0009	-	hypothetical protein
10	 45.77	0	12160..15360	-	1066	157959840	-	Spea_0010	-	amidohydrolase
11	 42.47	0	15705..16142	-	145	157959841	-	Spea_0011	-	hypothetical protein
12	 42.28	0	16177..16422	-	81	157959842	-	Spea_0012	-	SirA family protein
13	 48.83	+1	16567..17037	-	156	157959843	-	Spea_0013	-	ybaK/ebsC protein
14	 45.67	0	17096..17557	-	153	157959844	-	Spea_0014	-	GCN5-related N-acetyltransferase
15	 39.71	-1	17680..18432	-	250	157959845	-	Spea_0015	-	integrase catalytic region
16	 41.60	-1	18516..18914	-	132	157959846	-	Spea_0016	-	transposase
17	 49.40	+1	19009..20172	-	387	157959847	-	Spea_0017	-	3-ketoacyl-CoA thiolase
18	 48.42	0	20191..22344	-	717	157959848	-	Spea_0018	-	multifunctional fatty acid oxidation complex subunit alpha
19	 44.90	0	22709..24031	+	440	157959849	-	Spea_0019	-	proline dipeptidase
20	 44.39	0	24050..24664	+	204	157959850	-	Spea_0020	-	hypothetical protein
21	 47.81	0	24810..26267	+	485	157959851	-	Spea_0021	-	TrkH family potassium uptake protein
22	 44.13	0	26409..26936	+	175	157959852	-	Spea_0022	-	protoporphyrinogen oxidase
23	 41.60	-1	27037..27435	+	132	157959853	-	Spea_0023	-	transposase
24	 39.71	-1	27519..28271	+	250	157959854	-	Spea_0024	-	integrase catalytic region
25	 43.14	0	28334..28639	-	101	157959855	-	Spea_0025	-	ArsR family transcriptional regulator
26	 45.19	0	28851..29390	+	179	157959856	-	Spea_0026	-	protoporphyrinogen oxidase
27	 49.06	+1	29446..30888	-	480	157959857	-	Spea_0027	-	TrkH family potassium uptake protein
28	 48.09	0	30910..32319	-	469	157959858	-	Spea_0028	-	potassium transporter peripheral membrane component
29	 48.63	+1	32327..33607	-	426	157959859	-	Spea_0029	-	sun protein
30	 49.07	+1	33614..34579	-	321	157959860	-	Spea_0030	-	methionyl-tRNA formyltransferase
31	 43.67	0	34584..35183	-	199	157959861	-	Spea_0031	-	peptide deformylase
32	 46.65	0	35245..36333	+	362	157959862	-	Spea_0032	-	peptidoglycan-binding LysM
33	 46.76	0	36489..37508	+	339	157959863	-	Spea_0033	-	DNA protecting protein DprA
34	 41.77	-1	37511..37984	+	157	157959864	-	Spea_0034	-	hypothetical protein
35	 46.41	0	38252..39811	-	519	157959865	-	Spea_0035	-	collagenase
36	 46.10	0	40012..40575	+	187	157959866	-	Spea_0036	-	DNA topoisomerase type IA Zn finger domain-containing protein
37	 46.81	0	40662..41225	+	187	157959867	-	Spea_0037	-	SUA5/yciO/yrdC domain-containing protein
38	 49.40	+1	41250..42164	+	304	157959868	-	Spea_0038	-	coproporphyrinogen III oxidase
39	 44.60	0	42219..42653	-	144	157959869	-	Spea_0039	-	globin
40	 45.96	0	42821..43636	+	271	157959870	-	Spea_0040	-	shikimate 5-dehydrogenase
41	 40.14	-1	43660..43938	+	92	157959871	-	Spea_0041	-	hypothetical protein
42	 47.13	0	43968..44525	-	185	157959872	-	Spea_0042	-	carbonic anhydrase
43	 37.73	-2	57162..59639	-	825	157959873	-	Spea_0043	-	hypothetical protein
44	 39.22	-1	59713..59967	-	84	157959874	-	Spea_0044	-	hypothetical protein
45	 43.09	0	59964..61265	-	433	157959875	-	Spea_0045	-	hypothetical protein
46	 39.00	-1	61701..62882	+	393	157959876	-	Spea_0046	-	polysaccharide biosynthesis protein CapD
47	 44.10	0	62895..64055	+	386	157959877	-	Spea_0047	-	DegT/DnrJ/EryC1/StrS aminotransferase
48	 40.63	-1	64064..65242	+	392	157959878	-	Spea_0048	-	UDP-N-acetylglucosamine 2-epimerase
49	 42.74	0	65250..66323	+	357	157959879	-	Spea_0049	-	N-acylneuraminate-9-phosphate synthase
50	 41.86	-1	66316..66960	+	214	157959880	-	Spea_0050	-	sialic acid biosynthesis protein NeuD
51	 37.88	-2	66980..68035	+	351	157959881	-	Spea_0051	-	nucleotidyl transferase
52	 38.67	-1	68035..68727	+	230	157959882	-	Spea_0052	-	acylneuraminate cytidylyltransferase
53	 36.11	-2	68776..69063	-	95	157959883	-	Spea_0053	-	hypothetical protein
54	 36.81	-2	69114..69545	-	143	157959884	-	Spea_0054	-	hypothetical protein
55	 45.50	0	69530..70540	-	336	157959885	-	Spea_0055	-	OmpA/MotB domain-containing protein
56	 45.10	0	70540..71397	-	285	157959886	-	Spea_0056	-	MotA/TolQ/ExbB proton channel
57	 45.23	0	71412..72134	-	240	157959887	-	Spea_0057	-	flagellar biosynthesis sigma factor
58	 41.23	-1	72146..72601	-	151	157959888	-	Spea_0058	-	flagellar basal body-associated protein FliL
59	 48.76	+1	72616..73788	-	390	157959889	-	Spea_0059	-	flagellar hook-length control protein
60	 45.06	0	73781..74104	-	107	157959890	-	Spea_0060	-	hypothetical protein
61	 46.98	0	74073..74453	-	126	157959891	-	Spea_0061	-	flagellar protein FliS
62	 46.23	0	74467..75885	-	472	157959892	-	Spea_0062	-	flagellar hook-associated 2 domain-containing protein
63	 45.05	0	76202..77020	-	272	157959893	-	Spea_0063	-	flagellin domain-containing protein
64	 44.86	0	77319..78350	-	343	157959894	-	Spea_0064	-	hypothetical protein
65	 47.06	0	78369..79286	-	305	157959895	-	Spea_0065	-	flagellar hook-associated protein 3
66	 45.78	0	79297..80670	-	457	157959896	-	Spea_0066	-	flagellar hook-associated protein FlgK
67	 47.75	0	80721..81143	-	140	157959897	-	Spea_0067	-	peptidoglycan hydrolase
68	 50.49	+1	81143..82273	-	376	157959898	-	Spea_0068	-	flagellar basal body P-ring protein
69	 48.30	0	82311..82985	-	224	157959899	-	Spea_0069	-	flagellar basal body L-ring protein
70	 49.11	+1	83033..83818	-	261	157959900	-	Spea_0070	-	flagellar basal-body rod protein FlgG
71	 53.44	+2	83843..84568	-	241	157959901	-	Spea_0071	-	flagellar basal-body rod protein FlgF
72	 48.88	+1	84587..85795	-	402	157959902	-	Spea_0072	-	flagellar hook protein FlgE
73	 47.58	0	85819..86478	-	219	157959903	-	Spea_0073	-	flagellar hook capping protein
74	 50.24	+1	86478..86897	-	139	157959904	-	Spea_0074	-	flagellar basal-body rod protein FlgC
75	 46.15	0	86906..87256	-	116	157959905	-	Spea_0075	-	flagellar basal body rod protein FlgB
76	 46.80	0	87320..88084	+	254	157959906	-	Spea_0076	-	SAF domain-containing protein
77	 45.26	0	88187..88471	+	94	157959907	-	Spea_0077	-	hypothetical protein
78	 46.62	0	88464..88922	+	152	157959908	-	Spea_0078	-	hypothetical protein
79	 46.14	0	88938..89351	-	137	157959909	-	Spea_0079	-	hypothetical protein
80	 51.57	+1	89366..90703	-	445	157959910	-	Spea_0080	-	FliI/YscN family ATPase
81	 49.47	+1	90681..91436	-	251	157959911	-	Spea_0081	-	flagellar assembly protein H
82	 48.32	0	91436..92449	-	337	157959912	-	Spea_0082	-	flagellar motor switch protein G
83	 48.44	0	92510..94210	-	566	157959913	-	Spea_0083	-	flagellar MS-ring protein
84	 46.02	0	94286..94624	-	112	157959914	-	Spea_0084	-	flagellar hook-basal body complex subunit FliE
85	 48.55	+1	94655..95962	-	435	157959915	-	Spea_0085	-	sigma-54 dependent trancsriptional regulator
86	 47.26	0	95949..96860	-	303	157959916	-	Spea_0086	-	OmpA/MotB domain-containing protein
87	 45.69	0	97405..98286	+	293	157959917	-	Spea_0087	-	hypothetical protein
88	 43.70	0	98279..98635	+	118	157959918	-	Spea_0088	-	flagellar motor switch protein FliN
89	 45.82	0	98638..99366	+	242	157959919	-	Spea_0089	-	flagellar biosynthesis protein FliP
90	 46.30	0	99553..99822	+	89	157959920	-	Spea_0090	-	flagellar biosynthetic protein FliQ
91	 46.92	0	99901..100680	+	259	157959921	-	Spea_0091	-	flagellar biosynthetic protein FliR
92	 46.95	0	100677..101807	+	376	157959922	-	Spea_0092	-	flagellar biosynthetic protein FlhB
93	 49.86	+1	101823..103904	+	693	157959923	-	Spea_0093	-	flagellar biosynthesis protein FlhA
94	 49.54	+1	103963..104937	-	324	157959924	-	Spea_0094	-	alpha/beta hydrolase fold
95	 50.22	+1	105266..107065	-	599	157959925	-	Spea_0095	-	hypothetical protein
96	 44.59	0	107416..108756	-	446	157959926	-	Spea_0096	-	coproporphyrinogen III oxidase
97	 44.44	0	109044..109511	-	155	157959927	-	Spea_0097	-	hypothetical protein
98	 42.27	0	109605..110141	-	178	157959928	-	Spea_0098	-	hypothetical protein
99	 44.25	0	110195..110863	-	222	157959929	-	Spea_0099	-	hypothetical protein
100	 44.28	0	111657..112277	-	206	157959930	-	Spea_0100	-	cytochrome c class I
45.18	MEAN

3.28	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.