IslandPathversion 1.0

IslandPath Analysis: Shewanella pealeana ATCC 700345



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 45.18 STD DEV: 3.28
Shewanella pealeana ATCC 700345, complete genome - 1..5174581
4241 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.78	0	223..1608	+	461	157959831	-	Spea_0001	-	chromosomal replication initiation protein
2	 45.50	0	1628..2728	+	366	157959832	-	Spea_0002	-	DNA polymerase III, beta subunit
3	 43.03	0	2849..3931	+	360	157959833	-	Spea_0003	-	DNA replication and repair protein RecF
4	 44.80	0	3924..6365	+	813	157959834	-	Spea_0004	-	DNA gyrase, B subunit
5	 44.60	0	6442..7506	+	354	157959835	-	Spea_0005	-	metal dependent phosphohydrolase
6	 46.14	0	7582..9651	-	689	157959836	-	Spea_0006	-	glycyl-tRNA synthetase subunit beta
7	 47.22	0	9663..10526	-	287	157959837	-	Spea_0007	-	glycyl-tRNA synthetase subunit alpha
8	 41.00	-1	10686..11246	+	186	157959838	-	Spea_0008	-	DNA-3-methyladenine glycosylase I
9	 39.19	-1	11265..11930	-	221	157959839	-	Spea_0009	-	hypothetical protein
10	 45.77	0	12160..15360	-	1066	157959840	-	Spea_0010	-	amidohydrolase
11	 42.47	0	15705..16142	-	145	157959841	-	Spea_0011	-	hypothetical protein
12	 42.28	0	16177..16422	-	81