IslandPath Analysis: Cytophaga hutchinsonii ATCC 33406



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.69   STD DEV: 4.14
Cytophaga hutchinsonii ATCC 33406, complete genome - 1..4433218
3785 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 34.37	-1	173..850	+	225	110636428	-	CHU_0001	-	capsular polysaccharide biosythesis protein
2	 40.76	0	847..1815	+	322	110636429	-	CHU_0002	-	nucleoside-diphosphate-sugar epimerase
3	 39.26	0	1955..3355	+	466	110636430	-	CHU_0003	-	TPR repeat-containing protein
4	 40.08	0	3357..4127	+	256	110636431	-	CHU_0004	-	phosphosulfolactate synthase
5	 40.03	0	4137..4793	+	218	110636432	dedA	CHU_0005	-	integral membrane protein; DedA family protein
6	 41.30	0	4870..5610	+	246	110636433	aroE	CHU_0006	-	shikimate dehydrogenase
7	 40.26	0	5690..6469	-	259	110636434	-	CHU_0007	-	hypothetical protein
8	 44.91	+1	6684..8705	+	673	110636435	uvrB	CHU_0008	-	excinuclease ABC subunit B
9	 42.21	0	8925..9476	+	183	110636436	dnaQ	CHU_0009	-	DNA polymerase III, epsilon subunit
10	 33.33	-1	9549..9845	+	98	110636437	-	CHU_0010	-	hypothetical protein
11	 37.62	0	9942..10571	-	209	110636438	-	CHU_0011	-	fatty acid hydroxylase
12	 40.18	0	10631..11770	-	379	110636439	-	CHU_0012	-	a-glycosyltransferase
13	 41.51	0	11919..14891	-	990	110636440	nagA	CHU_0013	-	b-glucosidase
14	 41.03	0	15168..17000	+	610	110636441	mutL	CHU_0014	-	DNA mismatch repair protein
15	 38.74	0	17018..17812	+	264	110636442	-	CHU_0015	-	rhomboid family membrane protein
16	 40.55	0	17829..18701	+	290	110636443	-	CHU_0016	-	hypothetical protein
17	 45.04	+1	18701..19486	+	261	110636444	paaG	CHU_0017	-	enoyl-CoA hydratase
18	 39.25	0	19489..21009	+	506	110636445	cap	CHU_0018	-	polysaccharide biosynthesis protein; permease component
19	 42.58	0	21023..21487	+	154	110636446	dut	CHU_0019	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
20	 35.03	0	21575..22576	+	333	110636447	rfbA	CHU_0020	-	glucose-1-phosphate thymidyltransferase
21	 37.60	0	22563..24344	+	593	110636448	-	CHU_0021	-	TPR repeat-containing protein
22	 33.58	-1	24307..25101	+	264	110636449	-	CHU_0022	-	hypothetical protein
23	 38.50	0	25073..26311	+	412	110636450	yibP	CHU_0023	-	M23/M37 family peptidase
24	 35.65	0	26398..26613	+	71	110636451	tatA	CHU_0024	-	sec-independent protein translocase
25	 42.00	0	26617..28047	+	476	110636452	gatA	CHU_0025	-	aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit A
26	 40.52	0	28037..29524	+	495	110636453	mltD	CHU_0026	-	peptidoglycan-binding lytic transglycosylase
27	 42.00	0	29576..31849	+	757	110636454	maeB	CHU_0027	-	malic enzyme
28	 37.67	0	31846..32445	+	199	110636455	ruvA	CHU_0028	-	Holliday junction DNA helicase
29	 40.35	0	32455..39597	+	2380	110636456	sprA	CHU_0029	-	gliding motility-related protein
30	 39.11	0	39658..40038	+	126	110636457	gcvH	CHU_0030	-	glycine cleavage system protein H
31	 40.19	0	40004..40426	+	140	110636458	-	CHU_0031	-	integral membrane protein
32	 40.93	0	40501..41685	+	394	110636459	iap	CHU_0032	-	aminopeptidase
33	 27.99	-2	42373..44673	+	766	110636460	-	CHU_0033	-	hypothetical protein
34	 29.81	-2	44847..45980	+	377	110636461	-	CHU_0034	-	zinc-related peptidase
35	 30.73	-1	45970..46545	+	191	110636462	-	CHU_0035	-	hypothetical protein
36	 27.76	-2	46660..47610	+	316	110636463	coiA	CHU_0036	-	competence protein; transcription factor
37	 31.27	-1	47638..48705	+	355	110636464	-	CHU_0037	-	Zn-dependent hydrolase
38	 30.39	-2	48710..49999	+	429	110636465	-	CHU_0038	-	hypothetical protein
39	 24.13	-2	49986..50528	+	180	110636466	-	CHU_0039	-	hypothetical protein
40	 27.15	-2	50518..53673	+	1051	110636467	-	CHU_0040	-	ATPase involved in DNA repair
41	 33.77	-1	53689..54609	+	306	110636468	-	CHU_0041	-	hypothetical protein
42	 33.33	-1	54651..55631	+	326	110636469	-	CHU_0042	-	endonuclease
43	 31.24	-1	55650..56270	+	206	110636470	-	CHU_0043	-	hypothetical protein
44	 35.03	0	56687..56863	-	58	110636472	-	CHU_0045	-	hypothetical protein
45	 32.80	-1	56692..57063	+	123	110636471	-	CHU_0044	-	hypothetical protein
46	 32.89	-1	57088..57312	-	74	110636473	munIC	CHU_0046	-	regulatory protein; transcriptional regulator
47	 37.04	0	57446..57958	+	170	110636474	-	CHU_0047	-	hypothetical protein
48	 32.59	-1	58075..58476	+	133	110636475	-	CHU_0048	-	hypothetical protein
49	 32.58	-1	58528..60120	-	530	110636476	-	CHU_0049	-	hypothetical protein
50	 34.78	0	60525..61148	+	207	110636477	pinQ	CHU_0050	-	DNA-invertase from lambdoid prophage Qin
51	 34.37	-1	61855..63396	+	513	110636478	tnpX	CHU_0051	-	site-specific recombinase
52	 42.56	0	63736..65187	+	483	110636479	degQ	CHU_0052	-	serine protease
53	 44.49	+1	65262..66803	+	513	110636480	dhaL	CHU_0053	-	NAD+-dependent aldehyde dehydrogenase
54	 33.33	-1	66879..67304	+	141	110636481	atoC	CHU_0054	-	response regulator of ato, ornithine decarboxylase antizyme (sensor ATOS)
55	 35.29	0	67309..68742	-	477	110636482	-	CHU_0055	-	hypothetical protein
56	 37.48	0	68907..69461	-	184	110636483	-	CHU_0056	-	hypothetical protein
57	 40.38	0	69681..70205	-	174	110636484	nlpC	CHU_0057	-	lipoprotein
58	 38.68	0	70239..72128	+	629	110636485	asnB	CHU_0058	-	asparagine synthase (glutamine-hydrolysing)
59	 37.02	0	72222..73334	+	370	110636486	gmd	CHU_0059	-	GDP-D-mannose dehydratase
60	 38.19	0	73340..74266	+	308	110636487	wcaG	CHU_0060	-	GDP-fucose synthetase
61	 35.84	0	74308..75543	+	411	110636488	-	CHU_0061	-	glycosyltransferase
62	 38.44	0	75540..76439	+	299	110636489	-	CHU_0062	-	methyltransferase
63	 38.49	0	76436..77521	+	361	110636490	-	CHU_0063	-	a-glycosyltransferase
64	 35.68	0	77507..78913	-	468	110636491	-	CHU_0064	-	hypothetical protein
65	 37.18	0	78989..79456	+	155	110636492	lrp	CHU_0065	-	AsnC family transcriptional regulator
66	 35.87	0	79446..80783	-	445	110636493	-	CHU_0066	-	hypothetical protein
67	 44.33	+1	80866..81774	+	302	110636494	frvX	CHU_0067	-	aminopeptidase
68	 39.14	0	81895..82497	+	200	110636495	adk	CHU_0068	-	adenylate kinase
69	 44.18	+1	82692..83705	+	337	110636496	obgE	CHU_0069	-	GTPase ObgE
70	 37.04	0	83796..84335	+	179	110636497	grpE	CHU_0070	-	molecular chaperone, heat shock protein
71	 43.51	+1	84339..85478	+	379	110636498	dnaJ	CHU_0071	-	molecular chaperone, heat shock protein
72	 35.52	0	85446..85628	-	60	110636499	-	CHU_0072	-	hypothetical protein
73	 38.92	0	85678..88131	+	817	110636500	thrA	CHU_0073	-	bifunctional aspartokinase I/homeserine dehydrogenase I
74	 44.73	+1	88226..89155	+	309	110636501	thrB	CHU_0074	-	homoserine kinase
75	 38.39	0	89257..90561	+	434	110636502	thrC	CHU_0075	-	threonine synthase
76	 37.09	0	90646..92004	-	452	110636503	-	CHU_0076	-	hypothetical protein
77	 36.25	0	92010..93485	-	491	110636504	-	CHU_0077	-	hypothetical protein
78	 36.70	0	93512..95026	-	504	110636505	-	CHU_0078	-	hypothetical protein
79	 33.33	-1	95289..95480	+	63	110636506	cspC	CHU_0079	-	cold-shock DNA-binding protein family protein
80	 39.69	0	95542..96516	-	324	110636507	rfaQ	CHU_0080	-	glycosyl transferase family protein
81	 40.78	0	96533..98224	-	563	110636887	-	CHU_0081	-	family X DNA polymerase IV
82	 37.01	0	98415..98822	+	135	110636509	-	CHU_0082	-	hypothetical protein
83	 42.96	+1	98891..99430	+	179	110636510	pyrR	CHU_0083	-	uracil phosphoribosyltransferase; pyrimidine operon attenuation protein
84	 41.13	0	99439..100362	+	307	110636511	pyrB	CHU_0084	-	aspartate carbamoyltransferase, catalytic subunit
85	 40.78	0	100368..101240	-	290	110636512	-	CHU_0085	-	hypothetical protein
86	 37.59	0	101697..102401	+	234	110636513	cmk	CHU_0086	-	cytidylate kinase
87	 39.23	0	102449..103330	+	293	110636514	ispH	CHU_0087	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
88	 35.78	0	103379..103951	+	190	110636515	-	CHU_0088	-	transmembrane protein
89	 36.50	0	104087..106960	+	957	110636516	-	CHU_0089	-	TonB-dependent receptor
90	 37.99	0	107050..108444	+	464	110636517	-	CHU_0090	-	hypothetical protein
91	 35.32	0	108535..109137	+	200	110636518	-	CHU_0091	-	hypothetical protein
92	 37.04	0	109202..109417	+	71	110636519	-	CHU_0092	-	hypothetical protein
93	 38.63	0	109885..110205	-	106	110636520	trxA	CHU_0093	-	thioredoxin
94	 42.45	0	110266..113850	-	1194	110636521	dnaE	CHU_0094	-	DNA polymerase III, alpha subunit
95	 38.50	0	114006..115688	-	560	110636522	-	CHU_0095	-	protease
96	 38.36	0	115849..116007	+	52	110636523	rpmH	CHU_0096	-	50S ribosomal protein L34
97	 34.77	0	116052..116468	+	138	110636524	rnpA	CHU_0097	-	RNase P protein, subunit A
98	 37.14	0	116514..118166	+	550	110636525	prc	CHU_0098	-	C-terminal processing peptidase-3
99	 36.87	0	118249..118926	+	225	110636526	-	CHU_0099	-	M22 family peptidase
100	 36.45	0	118941..119453	+	170	110636527	-	CHU_0100	-	hypothetical protein
38.69	MEAN

4.14	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.