IslandPath Analysis: Campylobacter hominis ATCC BAA-381



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.82   STD DEV: 5.24
Campylobacter hominis ATCC BAA-381, complete genome - 1..1711273
1682 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 28.01	0	1..1314	+	437	154148526	dnaA	CHAB381_0001	-	chromosomal replication initiator protein DnaA
2	 18.70	-2	1311..1433	+	40	154149297	-	CHAB381_0002	-	hypothetical protein
3	 27.26	0	1447..2517	+	356	154148349	dnaN	CHAB381_0003	-	DNA polymerase III subunit beta
4	 33.46	0	2528..4834	+	768	154148768	gyrB	CHAB381_0004	-	DNA gyrase subunit B
5	 24.43	-1	4834..6225	+	463	154148235	-	CHAB381_0005	-	putative diguanylate cyclase/phosphodiesterase
6	 29.91	0	6227..6781	+	184	154148610	-	CHAB381_0006	-	NADPH-dependent 7-cyano-7-deazaguanine reductase (NADPH-dependent nitrile oxidoreductase)
7	 31.20	0	6778..7995	+	405	154148070	-	CHAB381_0007	-	hydrolase
8	 26.90	0	8147..8566	+	139	154148458	-	CHAB381_0008	-	hypothetical protein
9	 33.33	0	8610..9230	-	206	154149206	-	CHAB381_0009	-	Ham1 family protein
10	 32.79	0	9309..10601	+	430	154148436	-	CHAB381_0010	-	multidrug-efflux transporter
11	 32.92	0	10598..11809	+	403	154149154	-	CHAB381_0011	-	molybdopterin binding domain-containing protein
12	 30.81	0	11819..12451	+	210	154149065	-	CHAB381_0012	-	carbonate dehydratase
13	 30.31	0	12448..14496	+	682	154148112	-	CHAB381_0013	-	mechanosensitive ion channel family protein
14	 36.98	0	14483..14674	+	63	154147892	-	CHAB381_0014	-	hypothetical protein
15	 31.55	0	14889..16682	+	597	154149027	-	CHAB381_0015	-	putative 5-methylcytosine-specific restriction enzyme B
16	 31.81	0	16776..18089	+	437	154148587	tig	CHAB381_0016	-	trigger factor
17	 37.41	+1	18089..18676	+	195	154148860	clpP	CHAB381_0017	-	ATP-dependent Clp protease proteolytic subunit
18	 30.23	0	18673..19188	+	171	154149172	def	CHAB381_0018	-	peptide deformylase
19	 36.76	0	19185..20702	+	505	154148439	-	CHAB381_0019	-	putative Mg chelatase-like protein
20	 33.40	0	20699..22171	+	490	154148276	-	CHAB381_0020	-	YjeF-related protein
21	 35.41	0	22153..22731	+	192	154149015	purN	CHAB381_0021	-	phosphoribosylglycinamide formyltransferase
22	 32.43	0	22990..24318	+	442	154148418	-	CHAB381_0022	-	magnesium and cobalt efflux protein CorC
23	 39.01	+1	24346..25191	+	281	154149222	ttdA	CHAB381_0023	-	fumarate hydratase
24	 39.75	+1	25202..25762	+	186	154148686	fumB	CHAB381_0024	-	fumarate hydratase, class I
25	 25.17	-1	26169..26315	+	48	154148001	-	CHAB381_0025	-	hypothetical protein
26	 36.68	0	26381..27097	+	238	154148732	-	CHAB381_0026	-	protein YegH
27	 32.43	0	27130..27573	+	147	154148291	-	CHAB381_0027	-	hypothetical protein
28	 35.85	0	27657..28847	+	396	154149005	nhaA	CHAB381_0028	-	Na+/H+ antiporter NhaA
29	 35.24	0	28834..29304	+	156	154148464	ribH	CHAB381_0029	-	riboflavin synthase subunit beta
30	 35.10	0	29306..29701	+	131	154149182	nusB	CHAB381_0030	-	transcription antitermination protein NusB
31	 35.67	0	29698..30381	+	227	154148641	pyrF	CHAB381_0031	-	orotidine 5'-phosphate decarboxylase
32	 37.39	+1	30524..31336	-	270	154149351	-	CHAB381_0032	-	peptidase M48, Ste24p
33	 34.20	0	31652..32572	-	306	154149040	-	CHAB381_0033	-	auxin efflux carrier (AEC) family protein
34	 34.05	0	32839..33813	-	324	154147873	-	CHAB381_0034	-	putative transporter
35	 32.37	0	33806..34219	-	137	154148901	-	CHAB381_0035	-	putative periplasmic protein
36	 36.52	0	34540..35010	+	156	154148599	moaC	CHAB381_0036	-	molybdenum cofactor biosynthesis protein C
37	 29.59	0	34988..35254	+	88	154149521	-	CHAB381_0037	-	hypothetical protein
38	 29.21	0	35264..36475	+	403	154148408	-	CHAB381_0038	-	hypothetical protein
39	 34.27	0	36540..36752	+	70	154148128	rpsU	CHAB381_0039	-	30S ribosomal protein S21
40	 30.45	0	36847..37470	+	207	154148536	-	CHAB381_0040	-	hypothetical protein
41	 38.29	+1	37787..38371	+	194	154149253	folE	CHAB381_0041	-	GTP cyclohydrolase I
42	 40.97	+1	38443..39633	+	396	154148303	nifS	CHAB381_0042	-	NifS family cysteine desulfurase
43	 39.68	+1	39647..40639	+	330	154148924	-	CHAB381_0043	-	nitrogen fixation protein NifU
44	 28.95	0	41321..41434	-	37	154149259	-	CHAB381_0044	-	hypothetical protein
45	 36.55	0	41881..42813	+	310	154148917	-	CHAB381_0045	-	glycerate dehydrogenase
46	 33.49	0	43307..44581	+	424	154148911	-	CHAB381_0047	-	coproporphyrinogen III oxidase
47	 20.29	-2	44613..44750	-	45	154148429	-	CHAB381_0048	-	hypothetical protein
48	 22.39	-1	44926..45126	+	66	154148240	-	CHAB381_0049	-	hypothetical protein
49	 38.45	+1	45659..46636	-	325	154148301	trpS	CHAB381_0050	-	tryptophanyl-tRNA synthetase
50	 30.16	0	46648..47151	-	167	154149247	-	CHAB381_0051	-	hypothetical protein
51	 32.16	0	47155..47667	-	170	154148531	aroK	CHAB381_0052	-	shikimate kinase
52	 35.43	0	47657..49039	-	460	154149467	-	CHAB381_0053	-	GTP-binding protein EngA
53	 34.68	0	49139..50032	+	297	154148280	-	CHAB381_0054	-	integral membrane protein
54	 40.20	+1	50042..50857	+	271	154148818	kdsA	CHAB381_0055	-	2-dehydro-3-deoxyphosphooctonate aldolase
55	 36.70	0	50992..51258	+	88	154149305	-	CHAB381_0056	-	cytosine-specific methyltransferase NlaX (M.NlaX)
56	 37.62	+1	53815..55026	-	403	154148609	lys1	CHAB381_0061	-	saccharopine dehydrogenase
57	 30.40	0	59435..60526	-	363	154148129	-	CHAB381_0063	-	hypothetical protein
58	 28.22	0	60529..61584	-	351	154147883	-	CHAB381_0064	-	modification methylase EcoRI (adenine-specificmethyltransferase EcoRI) (M.EcoRI)
59	 27.12	0	61595..62689	-	364	154148820	-	CHAB381_0065	-	modification methylase EcoRI (adenine-specificmethyltransferase EcoRI) (M.EcoRI)
60	 32.08	0	63206..63841	+	211	154148044	-	CHAB381_0066	-	hypothetical protein
61	 28.72	0	63950..64621	+	223	154149506	-	CHAB381_0067	-	hypothetical protein
62	 23.40	-1	64738..64878	+	46	154149451	-	CHAB381_0068	-	transposase
63	 25.45	-1	65290..65454	+	54	154148332	-	CHAB381_0069	-	ComE operon protein 1
64	 21.97	-1	65672..65803	-	43	154148412	-	CHAB381_0070	-	hypothetical protein
65	 38.39	+1	66054..68882	-	942	154148692	uvrA	CHAB381_0072	-	excinuclease ABC subunit A
66	 32.14	0	69049..69549	+	166	154149170	-	CHAB381_0073	-	hypothetical protein
67	 30.84	0	69537..70697	+	386	154148346	-	CHAB381_0074	-	hypothetical protein
68	 34.90	0	70699..71337	+	212	154149480	-	CHAB381_0075	-	3-oxoacyl-[acyl-carrier protein] reductase
69	 25.00	-1	71354..71521	+	55	154148564	-	CHAB381_0076	-	hypothetical protein
70	 18.14	-2	75181..75417	+	78	154147977	-	CHAB381_0079	-	hypothetical protein
71	 35.25	0	75446..76747	-	433	154149098	-	CHAB381_0080	-	putative aminotransferase
72	 28.57	0	76759..77682	+	307	154147961	-	CHAB381_0081	-	ATPase
73	 25.79	-1	77849..78007	-	52	154148984	-	CHAB381_0082	-	hypothetical protein
74	 42.31	+2	78002..78313	+	103	154148252	rpsJ	CHAB381_0083	-	30S ribosomal protein S10
75	 36.81	0	78324..78899	+	191	154148794	rplC	CHAB381_0084	-	50S ribosomal protein L3
76	 35.12	0	78896..79510	+	204	154148894	rplD	CHAB381_0085	-	50S ribosomal protein L4
77	 34.40	0	79512..79793	+	93	154148877	rplW	CHAB381_0086	-	50S ribosomal protein L23
78	 37.67	+1	79795..80625	+	276	154147959	rplB	CHAB381_0087	-	50S ribosomal protein L2
79	 32.62	0	80625..80906	+	93	154149120	rpsS	CHAB381_0088	-	30S ribosomal protein S19
80	 36.97	0	80916..81245	+	109	154149283	rplV	CHAB381_0089	-	50S ribosomal protein L22
81	 35.34	0	81248..81943	+	231	154149468	rpsC	CHAB381_0090	-	30S ribosomal protein S3
82	 36.62	0	81946..82371	+	141	154148600	rplP	CHAB381_0091	-	50S ribosomal protein L16
83	 26.88	0	82358..82543	+	61	154149231	rpmC	CHAB381_0092	-	50S ribosomal protein L29
84	 32.94	0	82554..82805	+	83	154148095	rpsQ	CHAB381_0093	-	30S ribosomal protein S17
85	 38.75	+1	82805..83173	+	122	154148791	rplN	CHAB381_0094	-	50S ribosomal protein L14
86	 30.74	0	83173..83403	+	76	154148233	rplX	CHAB381_0095	-	50S ribosomal protein L24
87	 31.32	0	83407..83952	+	181	154148087	-	CHAB381_0096	-	50S ribosomal protein L5
88	 38.17	+1	83954..84139	+	61	154149067	rpsN	CHAB381_0097	-	ribosomal protein S14p/S29e
89	 32.58	0	84149..84544	+	131	154149530	rpsH	CHAB381_0098	-	30S ribosomal protein S8
90	 34.26	0	84620..85156	+	178	154148630	-	CHAB381_0099	-	50S ribosomal protein L6
91	 31.09	0	85166..85522	+	118	154148292	rplR	CHAB381_0100	-	50S ribosomal protein L18
92	 31.97	0	85532..85972	+	146	154148935	rpsE	CHAB381_0101	-	30S ribosomal protein S5
93	 36.32	0	85983..86384	+	133	154148588	rplO	CHAB381_0102	-	50S ribosomal protein L15
94	 33.49	0	86384..87649	+	421	154149113	-	CHAB381_0103	-	preprotein translocase subunit SecY
95	 34.78	0	87649..88407	+	252	154148348	map	CHAB381_0104	-	methionine aminopeptidase
96	 37.55	+1	88404..88877	+	157	154149511	ybaK	CHAB381_0105	-	YbaK/ebsC protein
97	 31.72	0	88904..89521	+	205	154148799	-	CHAB381_0106	-	putative methyl transferase
98	 30.40	0	89982..90800	-	272	154149336	dapF	CHAB381_0107	-	diaminopimelate epimerase
99	 26.57	-1	90775..91380	-	201	154148632	coaE	CHAB381_0108	-	dephospho-CoA kinase
100	 37.70	+1	91454..92437	+	327	154148180	purM	CHAB381_0109	-	phosphoribosylaminoimidazole synthetase
31.82	MEAN

5.24	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.