IslandPath Analysis: Idiomarina loihiensis L2TR



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.04   STD DEV: 3.23
Idiomarina loihiensis L2TR, complete genome - 1..2839318
2628 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 45.05	0	362..1726	+	454	56459113	dnaA	IL0001	-	ATPase involved in DNA replication initiation
2	 45.74	0	1758..2861	+	367	56459114	dnaN	IL0002	-	DNA polymerase sliding clamp subunit
3	 43.10	-1	2874..3938	+	354	56459115	recF	IL0003	-	recombinational DNA repair ATPase
4	 44.54	0	3954..6371	+	805	56459116	gyrB	IL0004	-	DNA gyrase subunit B
5	 48.09	0	6465..8531	-	688	56459117	glyS	IL0005	-	glycyl-tRNA synthetase subunit beta
6	 51.35	+1	8544..9470	-	308	56459118	glyQ	IL0006	-	glycyl-tRNA synthetase subunit alpha
7	 45.33	0	9558..10157	+	199	56459119	tag	IL0007	-	3-methyladenine DNA glycosylase
8	 45.93	0	10174..10665	+	163	56459120	-	IL0008	-	acetyltransferase
9	 45.83	0	10684..10923	-	79	56459121	sirA	IL0009	-	redox protein, regulator of disulfide bond formation
10	 51.20	+1	11193..12356	-	387	56459122	fadA	IL0010	-	3-ketoacyl-CoA thiolase
11	 49.51	0	12377..14533	-	718	56459123	fadB	IL0011	-	multifunctional fatty acid oxidation complex subunit alpha
12	 48.46	0	14669..16618	+	649	56459124	slt	IL0012	-	soluble lytic murein transglycosylase
13	 45.84	0	16630..17988	+	452	56459125	pepQ	IL0013	-	proline dipeptidase
14	 51.62	+1	17981..18598	+	205	56459126	-	IL0014	-	hypothetical protein
15	 48.87	0	18595..19971	-	458	56459127	trkA	IL0015	-	potassium transporter peripheral membrane component
16	 50.41	+1	19968..21296	-	442	56459128	sun	IL0016	-	tRNA and rRNA cytosine-C5-methylase
17	 51.95	+1	21293..22243	-	316	56459129	fmt	IL0017	-	methionyl-tRNA formyltransferase
18	 47.24	0	22243..22767	-	174	56459130	def	IL0018	-	N-formylmethionyl-tRNA deformylase
19	 49.75	0	22857..23867	+	336	56459131	smf	IL0019	-	Rossmann fold nucleotide-binding protein involved in DNA uptake
20	 47.26	0	23871..24344	+	157	56459132	smg	IL0020	-	hypothetical protein
21	 50.68	+1	24344..24856	+	170	56459133	-	IL0021	-	zinc finger domain-containing protein
22	 52.05	+1	24884..25444	+	186	56459134	-	IL0022	-	Sua5 family translation factor
23	 49.95	0	25437..26351	+	304	56459135	hemF	IL0023	-	coproporphyrinogen III oxidase
24	 50.00	0	26348..27187	+	279	56459136	aroE	IL0024	-	shikimate 5-dehydrogenase
25	 48.08	0	27587..30352	+	921	56459137	polA	IL0025	-	DNA polymerase I
26	 48.32	0	30480..31313	-	277	56459138	-	IL0026	-	permease
27	 47.67	0	31378..31998	-	206	56459139	engB	IL0027	-	GTPase EngB
28	 49.12	0	32194..32820	+	208	56459140	-	IL0028	-	cytochrome c4
29	 49.52	0	33432..33845	+	137	56459141	-	IL0029	-	hypothetical protein
30	 45.10	0	33845..34303	+	152	56459142	-	IL0030	-	hypothetical protein
31	 49.52	0	34313..35140	+	275	56459143	cysE	IL0031	-	Serine acetyltransferase
32	 48.16	0	35137..36708	-	523	56459144	aer	IL0032	-	methyl-accepting chemotaxis protein (PAS/PAC and MSP doamins)
33	 42.51	-1	36876..37082	-	68	56459145	-	IL0033	-	cold shock protein
34	 49.63	0	37266..37811	-	181	56459146	-	IL0034	-	nicotinamidase-like amidase
35	 51.02	+1	37998..38489	+	163	56459147	purE	IL0035	-	phosphoribosylcarboxyaminoimidazole (NCAIR) mutase
36	 50.87	+1	38486..39574	+	362	56459148	purK	IL0036	-	phosphoribosylaminoimidazole carboxylase (NCAIR synthetase)
37	 48.69	0	39611..40261	-	216	56459149	-	IL0037	-	phospholipase/carboxylesterase family protein
38	 50.00	0	40261..41082	-	273	56459150	pheA	IL0038	-	prephenate dehydratase
39	 49.66	0	41079..43118	-	679	56459151	-	IL0039	-	acylaminoacyl-peptidase
40	 52.84	+1	43258..44349	+	363	56459152	dadX	IL0040	-	alanine racemase
41	 54.57	+2	44482..45870	+	462	56459153	appC	IL0041	-	cytochrome bd-type quinol oxidase, subunit 1
42	 54.19	+2	45874..46875	+	333	56459154	cydB	IL0042	-	cytochrome bd-type quinol oxidase, subunit 2
43	 48.57	0	46875..46979	+	34	56459155	-	IL0043	-	hypothetical protein
44	 51.14	+1	47025..48383	+	452	56459156	-	IL0044	-	amidohydrolase
45	 49.36	0	48411..49970	+	519	56459157	-	IL0045	-	Beta-lactamase class C family protein
46	 48.98	0	50016..50654	-	212	56459158	gst	IL0046	-	glutathione S-transferase
47	 52.28	+1	50780..51724	+	314	56459159	-	IL0047	-	DeoR family transcriptional regulator
48	 39.78	-2	52179..52457	-	92	56459160	-	IL0048	-	hypothetical protein
49	 47.42	0	52616..53041	-	141	56459161	-	IL0049	-	riboflavin-specific deaminase
50	 45.99	0	53223..53609	-	128	56459162	tra5_1	IL0050	-	transposase Tra5 related protein
51	 53.91	+2	53653..53997	-	114	56459163	tra5_2	IL0051	-	transposase Tra5 related protein
52	 42.99	-1	54263..55111	-	282	56459164	-	IL0052	-	permease
53	 48.72	0	55214..56110	+	298	56459165	-	IL0053	-	LysR family transcriptional regulator
54	 41.80	-1	56928..57470	+	180	56459166	-	IL0054	-	DNA-directed RNA polymerase specialized sigma subunit
55	 43.74	-1	57460..58314	+	284	56459167	-	IL0055	-	hypothetical protein
56	 39.42	-2	58709..59119	-	136	56459168	-	IL0056	-	DNA-binding HTH domain-protein
57	 47.62	0	59992..60264	+	90	56459169	hipB	IL0058	-	HipB transcriptional regulator
58	 44.98	0	60264..61577	+	437	56459170	hipA	IL0059	-	HipA
59	 45.69	0	61796..62305	-	169	56459171	-	IL0060	-	LuxR-like DNA-binding HTH domain-containing protein
60	 47.70	0	62404..63600	+	398	56459172	-	IL0061	-	Outer membrane protein
61	 49.09	0	63597..64637	+	346	56459173	-	IL0062	-	membrane fusion-like protein
62	 48.26	0	64637..67705	+	1022	56459174	-	IL0063	-	divalent cation exporter protein
63	 43.69	-1	67695..68003	+	102	56459175	-	IL0064	-	hypothetical protein
64	 48.77	0	68135..68782	-	215	56459176	-	IL0065	-	transcription negative regulator
65	 43.82	0	68880..69308	+	142	56459177	trxC	IL0066	-	thioredoxin related protein
66	 48.44	0	69376..69792	-	138	56459178	-	IL0067	-	hypothetical protein
67	 41.67	-1	69915..70250	+	111	56459179	-	IL0068	-	Zn-ribbon domain-containing protein
68	 47.17	0	70371..72422	-	683	56459180	-	IL0069	-	Outer membrane protein
69	 49.82	0	72895..73737	-	280	56459181	ada	IL0070	-	O6-methylguanine-DNA methyltransferase
70	 48.86	0	74021..74632	+	203	56459182	-	IL0071	-	TetR family transcriptional regulator
71	 51.84	+1	74827..76209	+	460	56459183	-	IL0072	-	NAD-dependent aldehyde dehydrogenase
72	 49.36	0	76300..77385	-	361	56459184	-	IL0073	-	hypothetical protein
73	 45.95	0	77423..79585	-	720	56459185	ptrB	IL0074	-	protease II
74	 50.39	+1	79774..80289	-	171	56459186	dps_1	IL0075	-	DNA-binding protein
75	 51.88	+1	80421..81509	-	362	56459187	xenA	IL0076	-	xenobiotic reductase A
76	 46.91	0	81650..83557	-	635	56459188	-	IL0077	-	hypothetical protein
77	 47.82	0	83811..84659	+	282	56459189	-	IL0078	-	hypothetical protein
78	 51.80	+1	84786..86783	+	665	56459190	-	IL0079	-	alkaline phosphatase family protein
79	 48.81	0	86848..87267	-	139	56459191	-	IL0080	-	OsmC-like organic hydroperoxide reductase
80	 49.78	0	87391..87846	-	151	56459192	-	IL0081	-	MarR family transcriptional regulator
81	 48.48	0	88025..89410	+	461	56459193	-	IL0082	-	xylosidase/arabinosidase
82	 50.31	+1	89503..90297	+	264	56459194	-	IL0083	-	Short chain dehydrogenase/reductase family protein
83	 49.63	0	90301..91110	-	269	56459195	-	IL0084	-	calcineurin phosphohydrolase superfamily protein
84	 39.18	-2	91519..91809	+	96	56459196	-	IL0085	-	hypothetical protein
85	 47.92	0	91825..92064	-	79	56459197	-	IL0086	-	hypothetical protein
86	 44.58	0	92179..92427	+	82	56459198	-	IL0087	-	hypothetical protein
87	 42.62	-1	92429..94399	-	656	56459199	-	IL0088	-	alkaline phosphatase superfamily protein
88	 47.22	0	94523..94882	+	119	56459200	-	IL0089	-	diacylglycerol kinase
89	 50.08	0	95027..95629	+	200	56459201	-	IL0090	-	thermostable hemolysin related protein
90	 50.59	+1	95620..96969	+	449	56459202	-	IL0091	-	long-chain acyl-CoA synthetase
91	 49.85	0	96979..97656	+	225	56459203	-	IL0092	-	Heme oxygenase related enzyme
92	 48.50	0	97653..98450	+	265	56459204	-	IL0093	-	short chain dehydrogenase
93	 48.47	0	98447..99100	+	217	56459205	-	IL0094	-	TPR repeat-containing protein
94	 50.98	+1	99109..99771	+	220	56459206	qseB_1	IL0095	-	response regulator
95	 45.02	0	99882..101105	+	407	56459207	qseC_1	IL0096	-	signal transduction histidine kinase
96	 45.49	0	101199..101708	+	169	56459208	-	IL0097	-	cytochrome B561
97	 50.78	+1	101703..102281	-	192	56459209	araC	IL0098	-	AraC-type DNA-binding domain-containing protein
98	 47.62	0	102352..102750	-	132	56459210	-	IL0099	-	hypothetical protein
99	 46.47	0	102731..103636	-	301	56459211	-	IL0100	-	signal protein
100	 48.10	0	103833..106379	+	848	56459212	-	IL0101	-	Outer membrane protein
47.04	MEAN

3.23	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.