IslandPath Analysis: Shewanella halifaxensis HAW-EB4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.20   STD DEV: 3.38
Shewanella halifaxensis HAW-EB4, complete genome - 1..5226917
4278 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.21	0	81..1466	+	461	167621942	-	Shal_0001	-	chromosomal replication initiation protein
2	 44.87	0	1486..2586	+	366	167621943	-	Shal_0002	-	DNA polymerase III, beta subunit
3	 41.71	-1	2806..3903	+	365	167621944	-	Shal_0003	-	DNA replication and repair protein RecF
4	 44.35	0	3881..6322	+	813	167621945	-	Shal_0004	-	DNA gyrase, B subunit
5	 43.57	0	6360..7463	+	367	167621946	-	Shal_0005	-	putative signal transduction protein
6	 47.44	0	7531..9600	-	689	167621947	-	Shal_0006	-	glycyl-tRNA synthetase subunit beta
7	 47.68	0	9612..10517	-	301	167621948	-	Shal_0007	-	glycyl-tRNA synthetase subunit alpha
8	 41.89	0	10636..11196	+	186	167621949	-	Shal_0008	-	DNA-3-methyladenine glycosylase I
9	 40.09	-1	11215..11880	-	221	167621950	-	Shal_0009	-	hypothetical protein
10	 46.89	0	12121..15315	-	1064	167621951	-	Shal_0010	-	amidohydrolase
11	 48.63	+1	15903..16085	-	60	167621952	-	Shal_0011	-	hypothetical protein
12	 45.12	0	16120..16365	-	81	167621953	-	Shal_0012	-	SirA family protein
13	 50.43	+1	16512..16979	-	155	167621954	-	Shal_0013	-	ybaK/ebsC protein
14	 43.29	0	17018..17479	-	153	167621955	-	Shal_0014	-	GCN5-related N-acetyltransferase
15	 50.69	+1	17651..18814	-	387	167621956	-	Shal_0015	-	3-ketoacyl-CoA thiolase
16	 48.33	0	18833..20986	-	717	167621957	-	Shal_0016	-	multifunctional fatty acid oxidation complex subunit alpha
17	 45.05	0	21349..22671	+	440	167621958	-	Shal_0017	-	proline dipeptidase
18	 43.25	0	22740..23354	+	204	167621959	-	Shal_0018	-	hypothetical protein
19	 47.53	0	23478..24935	+	485	167621960	-	Shal_0019	-	TrkH family potassium uptake protein
20	 44.13	0	25075..25602	+	175	167621961	-	Shal_0020	-	protoporphyrinogen oxidase
21	 45.75	0	25667..25972	-	101	167621962	-	Shal_0021	-	ArsR family transcriptional regulator
22	 44.26	0	26185..26724	+	179	167621963	-	Shal_0022	-	protoporphyrinogen oxidase
23	 47.82	0	26783..28225	-	480	167621964	-	Shal_0023	-	TrkH family potassium uptake protein
24	 48.58	0	28246..29655	-	469	167621965	-	Shal_0024	-	potassium transporter peripheral membrane component
25	 48.32	0	29663..30943	-	426	167621966	-	Shal_0025	-	sun protein
26	 47.31	0	30950..31915	-	321	167621967	-	Shal_0026	-	methionyl-tRNA formyltransferase
27	 42.83	0	31920..32519	-	199	167621968	-	Shal_0027	-	peptide deformylase
28	 47.14	0	32569..33669	+	366	167621969	-	Shal_0028	-	peptidoglycan-binding LysM
29	 46.96	0	33823..34842	+	339	167621970	-	Shal_0029	-	DNA protecting protein DprA
30	 41.35	-1	34845..35318	+	157	167621971	-	Shal_0030	-	hypothetical protein
31	 45.46	0	35594..37366	-	590	167621972	-	Shal_0031	-	collagenase
32	 45.57	0	37503..38066	+	187	167621973	-	Shal_0032	-	DNA topoisomerase type IA Zn finger domain-containing protein
33	 46.28	0	38154..38717	+	187	167621974	-	Shal_0033	-	SUA5/yciO/yrdC domain-containing protein
34	 46.78	0	38739..39653	+	304	167621975	-	Shal_0034	-	coproporphyrinogen III oxidase
35	 45.71	0	39744..40583	+	279	167621976	-	Shal_0035	-	shikimate 5-dehydrogenase
36	 40.14	-1	40614..40892	+	92	167621977	-	Shal_0036	-	hypothetical protein
37	 46.24	0	40938..41495	-	185	167621978	-	Shal_0037	-	carbonic anhydrase
38	 45.49	0	47722..47976	+	84	167621979	-	Shal_0038	-	hypothetical protein
39	 43.56	0	48028..48477	+	149	167621980	-	Shal_0039	-	BadM/Rrf2 family transcriptional regulator
40	 44.88	0	48463..49155	-	230	167621981	-	Shal_0040	-	protein of unknown function DUF610 YibQ
41	 43.78	0	49225..50430	-	401	167621982	-	Shal_0041	-	carboxyl-terminal protease
42	 43.03	0	50464..51597	-	377	167621983	-	Shal_0042	-	peptidase M23B
43	 47.12	0	51870..53414	-	514	167621984	-	Shal_0043	-	phosphoglyceromutase
44	 39.08	-1	53653..54087	+	144	167621985	-	Shal_0044	-	rhodanese domain-containing protein
45	 43.42	0	54318..54803	+	161	167621986	-	Shal_0045	-	preprotein translocase subunit SecB
46	 49.22	+1	54808..55827	+	339	167621987	-	Shal_0046	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
47	 49.54	+1	56080..57264	+	394	167621988	-	Shal_0047	-	hypothetical protein
48	 45.47	0	57512..58129	+	205	167621989	-	Shal_0048	-	hypothetical protein
49	 53.94	+2	58290..59240	+	316	167621990	-	Shal_0049	-	hypothetical protein
50	 49.13	+1	59237..60160	+	307	167621991	-	Shal_0050	-	ABC transporter related
51	 49.04	+1	60157..61302	+	381	167621992	-	Shal_0051	-	ABC-2 type transporter
52	 46.92	0	61627..62097	+	156	167621993	-	Shal_0052	-	NLP/P60 protein
53	 47.27	0	62177..63109	-	310	167621994	-	Shal_0053	-	hypothetical protein
54	 47.44	0	63133..64458	-	441	167621995	-	Shal_0054	-	hypothetical protein
55	 47.75	0	64809..65342	+	177	167621996	-	Shal_0055	-	molybdenum cofactor biosynthesis protein
56	 45.95	0	65381..65491	+	36	167621997	-	Shal_0056	-	hypothetical protein
57	 45.95	0	65530..65640	+	36	167621998	-	Shal_0057	-	hypothetical protein
58	 46.38	0	65679..65885	+	68	167621999	-	Shal_0058	-	hypothetical protein
59	 45.93	0	66300..67958	+	552	167622000	-	Shal_0059	-	methyl-accepting chemotaxis sensory transducer
60	 48.72	+1	68037..69173	-	378	167622001	-	Shal_0060	-	ABC-2 type transporter
61	 49.39	+1	69199..69933	-	244	167622002	-	Shal_0061	-	ABC transporter related
62	 51.26	+1	69944..71527	-	527	167622003	-	Shal_0062	-	TAP domain-containing protein
63	 47.25	0	72038..73834	+	598	167622004	-	Shal_0063	-	AMP-dependent synthetase and ligase
64	 47.41	0	74073..74477	+	134	167622005	-	Shal_0064	-	thioesterase superfamily protein
65	 49.28	+1	74528..74803	-	91	167622006	-	Shal_0065	-	hypothetical protein
66	 44.99	0	74882..75310	-	142	167622007	-	Shal_0066	-	thioesterase superfamily protein
67	 43.66	0	75502..76179	-	225	167622008	-	Shal_0067	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
68	 48.19	0	76436..77485	-	349	167622009	-	Shal_0068	-	lytic transglycosylase catalytic
69	 36.06	-2	78106..79353	+	415	167622010	-	Shal_0069	-	AAA ATPase
70	 37.42	-2	79346..80005	+	219	167622011	-	Shal_0070	-	hypothetical protein
71	 50.94	+1	80432..81658	-	408	167622012	-	Shal_0071	-	imidazolonepropionase
72	 49.79	+1	81834..82538	+	234	167622013	-	Shal_0072	-	histidine utilization repressor
73	 52.43	+2	82702..84366	+	554	167622014	-	Shal_0073	-	urocanate hydratase
74	 52.12	+2	84387..85919	+	510	167622015	-	Shal_0074	-	histidine ammonia-lyase
75	 47.79	0	85995..86402	-	135	167622016	-	Shal_0075	-	GCN5-related N-acetyltransferase
76	 46.39	0	86747..87673	+	308	167622017	-	Shal_0076	-	LysR family transcriptional regulator
77	 45.48	0	87756..88142	-	128	167622018	-	Shal_0077	-	putative endoribonuclease L-PSP
78	 50.39	+1	88218..89630	-	470	167622019	-	Shal_0078	-	Na+/H+ antiporter NhaC
79	 46.47	0	89748..90767	-	339	167622020	-	Shal_0079	-	1-aminocyclopropane-1-carboxylate deaminase
80	 38.46	-1	90860..91600	-	246	167622021	-	Shal_0080	-	hypothetical protein
81	 47.23	0	91842..92510	-	222	167622022	-	Shal_0081	-	hypothetical protein
82	 41.41	-1	92692..93087	-	131	167622023	-	Shal_0082	-	hypothetical protein
83	 44.10	0	93176..94327	-	383	167622024	-	Shal_0083	-	iron-containing alcohol dehydrogenase
84	 47.11	0	94707..95243	-	178	167622025	-	Shal_0084	-	hypothetical protein
85	 44.50	0	95438..96691	+	417	167622026	-	Shal_0085	-	MscS mechanosensitive ion channel
86	 47.53	0	96832..97458	-	208	167622027	-	Shal_0086	-	lysine exporter protein LysE/YggA
87	 48.73	+1	97559..98110	-	183	167622028	-	Shal_0087	-	phospholipid/glycerol acyltransferase
88	 43.26	0	98253..98675	+	140	167622029	-	Shal_0088	-	hypothetical protein
89	 47.14	0	98905..99672	-	255	167622030	-	Shal_0089	-	hypothetical protein
90	 48.68	+1	99753..101381	-	542	167622031	-	Shal_0090	-	hypothetical protein
91	 50.25	+1	101599..102195	+	198	167622032	-	Shal_0091	-	multiple antibiotic resistance (MarC)-related protein
92	 50.18	+1	102372..104537	+	721	167622033	-	Shal_0092	-	glycoside hydrolase family protein
93	 41.91	0	104681..104983	+	100	167622034	-	Shal_0093	-	hypothetical protein
94	 46.10	0	104985..107789	+	934	167622035	-	Shal_0094	-	peptidase M6 immune inhibitor A
95	 44.86	0	107848..108411	-	187	167622036	-	Shal_0095	-	chorismate lyase
96	 41.79	-1	108565..108966	+	133	167622037	-	Shal_0096	-	flagellar basal body-associated protein FliL-like protein
97	 45.41	0	109024..110166	+	380	167622038	-	Shal_0097	-	putative SAM-dependent methyltransferase
98	 48.12	0	110298..111203	-	301	167622039	-	Shal_0098	-	DNA binding domain-containing protein
99	 45.31	0	111251..112093	-	280	167622040	-	Shal_0099	-	formate dehydrogenase subunit FdhD
100	 48.29	0	112377..112844	+	155	167622041	-	Shal_0100	-	hypothetical protein
45.20	MEAN

3.38	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.