IslandPath Analysis: Yersinia pseudotuberculosis IP 31758



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.59   STD DEV: 5.41
Yersinia pseudotuberculosis IP 31758, complete genome - 1..4723306
4124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	0	21..461	-	146	153948430	mioC	YpsIP31758_0001	-	flavodoxin
2	 41.56	-1	554..1015	-	153	153948571	-	YpsIP31758_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1185..2177	+	330	153947913	asnA	YpsIP31758_0003	-	asparagine synthetase AsnA
4	 47.72	0	2276..3742	-	488	153947140	-	YpsIP31758_0004	-	hypothetical protein
5	 46.85	0	3746..5284	-	512	153946819	-	YpsIP31758_0005	-	regulatory ATPase RavA
6	 45.91	0	5558..7426	+	622	153950934	kup	YpsIP31758_0006	-	potassium transport protein Kup
7	 47.86	0	7631..8050	+	139	153950326	rbsD	YpsIP31758_0007	-	D-ribose pyranase
8	 50.05	0	8101..9027	+	308	153949716	rbsK	YpsIP31758_0008	-	ribokinase
9	 51.96	0	9047..9250	+	67	153949429	-	YpsIP31758_0010	-	hypothetical protein
10	 46.53	0	9247..10671	-	474	153949117	-	YpsIP31758_0009	-	major facilitator transporter
11	 43.91	0	10751..11440	-	229	153950298	-	YpsIP31758_0011	-	GntR family transcriptional regulator
12	 49.63	0	17641..18849	+	402	153949637	-	YpsIP31758_0015	-	IS285, transposase
13	 40.64	-1	18907..19440	-	177	153950087	mobB	YpsIP31758_0016	-	molybdopterin-guanine dinucleotide biosynthesis protein B
14	 43.37	0	19437..20024	-	195	153950522	mobA	YpsIP31758_0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A
15	 41.11	-1	20178..20447	+	89	153946870	-	YpsIP31758_0018	-	hypothetical protein
16	 46.50	0	20538..21524	+	328	153947234	-	YpsIP31758_0019	-	serine/threonine protein kinase
17	 42.15	-1	21552..22175	+	207	153947881	dsbA	YpsIP31758_0020	-	periplasmic protein disulfide isomerase I
18	 47.41	0	22666..25464	+	932	153948148	polA	YpsIP31758_0021	-	DNA polymerase I
19	 46.54	0	25872..26522	-	216	153948718	-	YpsIP31758_0022	-	GTPase EngB
20	 48.50	0	27266..27832	+	188	153949868	-	YpsIP31758_0023	-	hypothetical protein
21	 47.74	0	28015..29388	+	457	153950356	hemN	YpsIP31758_0024	-	coproporphyrinogen III oxidase
22	 52.80	0	29442..30854	-	470	153948743	ntrC	YpsIP31758_0025	-	nitrogen regulation protein NR(I)
23	 49.14	0	30862..31911	-	349	153949816	ntrB	YpsIP31758_0026	-	nitrogen regulation protein NR(II)
24	 50.99	0	32164..33573	-	469	153947977	glnA	YpsIP31758_0027	-	glutamine synthetase
25	 49.01	0	34135..35958	+	607	153948420	typA	YpsIP31758_0028	-	GTP-binding protein TypA/BipA
26	 44.16	0	36281..36871	+	196	153950010	-	YpsIP31758_0029	-	phosphatase
27	 47.80	0	36968..37852	+	294	153950591	rbn	YpsIP31758_0030	-	ribonuclease BN
28	 48.86	0	37859..38296	+	145	153948885	dtd	YpsIP31758_0031	-	D-tyrosyl-tRNA deacylase
29	 50.97	0	38482..39405	+	307	153949426	-	YpsIP31758_0032	-	acetyltransferase domain-containing protein
30	 47.84	0	39540..41249	-	569	153948902	-	YpsIP31758_0033	-	asmA family protein
31	 50.72	0	41396..42781	-	461	153949309	yicE	YpsIP31758_0034	-	xanthine permease
32	 36.67	-2	42780..42899	+	39	153948487	-	YpsIP31758_0035	-	hypothetical protein
33	 49.96	0	43019..44233	+	404	153947870	gltS	YpsIP31758_0036	-	sodium/glutamate symporter
34	 51.73	0	44599..46680	-	693	153947523	recG	YpsIP31758_0037	-	ATP-dependent DNA helicase RecG
35	 49.64	0	46681..47373	-	230	153947104	trmH	YpsIP31758_0038	-	tRNA guanosine-2'-O-methyltransferase
36	 48.93	0	47379..49487	-	702	153950503	spoT	YpsIP31758_0039	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
37	 51.45	0	49507..49782	-	91	153948913	rpoZ	YpsIP31758_0040	-	DNA-directed RNA polymerase subunit omega
38	 46.47	0	49837..50460	-	207	153948326	gmk	YpsIP31758_0041	-	guanylate kinase
39	 48.06	0	50861..52564	+	567	153948758	ligA2	YpsIP31758_0042	-	NAD-dependent DNA ligase LigB
40	 47.25	0	52584..53201	-	205	153947911	-	YpsIP31758_0043	-	hypothetical protein
41	 52.15	0	53942..54313	+	123	153947220	-	YpsIP31758_0044	-	hypothetical protein
42	 53.52	+1	54330..54542	-	70	153950103	-	YpsIP31758_0045	-	hypothetical protein
43	 51.08	0	54572..55174	-	200	153950543	-	YpsIP31758_0046	-	putative phage terminase, small subunit
44	 46.70	0	55921..56997	-	358	153948963	-	YpsIP31758_0047	-	hypothetical protein
45	 56.10	+1	57544..57666	-	40	153949407	-	YpsIP31758_0048	-	hypothetical protein
46	 53.99	+1	57623..58774	-	383	153948323	-	YpsIP31758_0049	-	hypothetical protein
47	 48.96	0	58771..59781	-	336	153948765	-	YpsIP31758_0050	-	hypothetical protein
48	 48.57	0	59796..60215	-	139	153947153	-	YpsIP31758_0051	-	hypothetical protein
49	 48.40	0	60215..60433	-	72	153947799	-	YpsIP31758_0052	-	AlpA family protein
50	 36.58	-2	60547..61440	-	297	153948831	-	YpsIP31758_0053	-	hypothetical protein
51	 49.57	0	61537..62805	-	422	153948267	-	YpsIP31758_0054	-	phage integrase family site specific recombinase
52	 48.15	0	62995..63858	-	287	153947343	-	YpsIP31758_0055	-	hypothetical protein
53	 51.32	0	63985..64701	+	238	153946899	rph	YpsIP31758_0056	-	ribonuclease PH
54	 50.77	0	64868..65515	+	215	153950260	pyrE	YpsIP31758_0057	-	orotate phosphoribosyltransferase
55	 48.07	0	65650..66246	-	198	153947788	-	YpsIP31758_0058	-	nucleoid occlusion protein
56	 49.12	0	66368..66823	-	151	153949654	dut	YpsIP31758_0059	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
57	 48.15	0	66804..68018	-	404	153949204	coaBC	YpsIP31758_0060	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
58	 45.29	0	68215..68883	+	222	153948496	radC	YpsIP31758_0061	-	DNA repair protein RadC
59	 50.63	0	69146..69382	+	78	153948103	rpmB	YpsIP31758_0062	-	50S ribosomal protein L28
60	 39.29	-1	69394..69561	+	55	153947868	rpmG	YpsIP31758_0063	-	50S ribosomal protein L33
61	 49.01	0	69644..70453	+	269	153948540	mutM	YpsIP31758_0064	-	formamidopyrimidine-DNA glycosylase
62	 46.46	0	70459..70938	-	159	153949256	coaD	YpsIP31758_0065	-	phosphopantetheine adenylyltransferase
63	 46.62	0	70935..71717	-	260	153949864	-	YpsIP31758_0066	-	glycosyl transferase, group 2 family protein
64	 50.47	0	71718..72995	-	425	153950178	kdtA	YpsIP31758_0067	-	3-deoxy-D-manno-octulosonic-acid transferase
65	 50.72	0	73415..74380	-	321	153950792	rfaC	YpsIP31758_0068	-	ADP-heptose:LPS heptosyl transferase I
66	 51.83	0	74380..75444	-	354	153947533	rfaF	YpsIP31758_0069	-	ADP-heptose:LPS heptosyltransferase II
67	 45.23	0	75475..76407	-	310	153950729	rfaD	YpsIP31758_0070	-	ADP-L-glycero-D-mannoheptose-6-epimerase
68	 50.25	0	76653..77864	+	403	153948577	kbl	YpsIP31758_0071	-	2-amino-3-ketobutyrate coenzyme A ligase
69	 48.05	0	77874..78899	+	341	153946990	tdh	YpsIP31758_0072	-	L-threonine 3-dehydrogenase
70	 49.16	0	79037..80047	-	336	153950008	-	YpsIP31758_0073	-	divergent polysaccharide deacetylase
71	 50.11	0	80071..81441	-	456	153950447	-	YpsIP31758_0074	-	hypothetical protein
72	 50.26	0	81451..82998	-	515	153948376	gpmI	YpsIP31758_0075	-	phosphoglyceromutase
73	 45.06	0	83395..83829	+	144	153949064	-	YpsIP31758_0076	-	rhodanese domain-containing protein
74	 51.41	0	83948..84196	+	82	153947711	grxC	YpsIP31758_0077	-	glutaredoxin 3
75	 48.43	0	84284..84760	+	158	153948166	secB	YpsIP31758_0078	-	preprotein translocase subunit SecB
76	 51.47	0	84760..85779	+	339	153950159	gpsA	YpsIP31758_0079	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
77	 49.76	0	86045..86866	+	273	153950908	cysE	YpsIP31758_0080	-	serine acetyltransferase
78	 49.08	0	86989..87477	-	162	153949233	-	YpsIP31758_0081	-	RNA methyltransferase
79	 52.11	0	87666..88730	+	354	153949976	ada	YpsIP31758_0082	-	ada regulatory protein
80	 50.04	0	88798..90174	-	458	153948865	cpxA	YpsIP31758_0083	-	two-component sensor protein
81	 50.07	0	90171..90869	-	232	153948260	cpxR2	YpsIP31758_0084	-	DNA-binding transcriptional regulator CpxR
82	 46.63	0	91043..91531	+	162	153950411	-	YpsIP31758_0085	-	periplasmic stress adaptor protein CpxP
83	 51.04	0	92209..93168	+	319	153950110	-	YpsIP31758_0086	-	putative transposase
84	 48.28	0	93730..94632	+	300	153947110	fieF	YpsIP31758_0088	-	ferrous iron efflux protein F
85	 47.46	0	94850..95833	+	327	153948129	pfkA	YpsIP31758_0089	-	6-phosphofructokinase
86	 46.16	0	96054..97043	+	329	153947748	-	YpsIP31758_0090	-	sulfate transporter subunit
87	 48.78	0	97293..98069	-	258	153949458	-	YpsIP31758_0091	-	hypothetical protein
88	 44.68	0	98187..99614	-	475	153948914	-	YpsIP31758_0092	-	divalent anion:Na+ symporter (DASS) family protein
89	 54.06	+1	99680..100393	-	237	153948889	ligK	YpsIP31758_0093	-	hypothetical protein
90	 51.49	0	100390..101127	-	245	153949433	-	YpsIP31758_0094	-	GlcNAc-PI de-N-acetylase family
91	 50.16	0	101264..102499	+	411	153950051	-	YpsIP31758_0095	-	LysR family substrate binding transcriptional regulator
92	 48.96	0	102729..103496	-	255	153950628	tpiA	YpsIP31758_0096	-	triosephosphate isomerase
93	 45.53	0	103625..104239	-	204	153948825	-	YpsIP31758_0097	-	hypothetical protein
94	 51.08	0	104381..104842	+	153	153947093	-	YpsIP31758_0098	-	hypothetical protein
95	 52.34	0	105238..105984	-	248	153949807	fpr	YpsIP31758_0099	-	ferredoxin-NADP reductase
96	 52.42	0	106139..107149	-	336	153948358	glpX	YpsIP31758_0100	-	fructose 1,6-bisphosphatase II
97	 51.90	0	107418..108941	-	507	153950623	glpK	YpsIP31758_0101	-	glycerol kinase
98	 51.00	0	109118..109966	-	282	153948956	glpF	YpsIP31758_0102	-	glycerol uptake facilitator protein
99	 42.92	0	110674..110913	+	79	153949896	-	YpsIP31758_0103	-	hypothetical protein
100	 43.26	0	111088..111228	+	46	153950769	-	YpsIP31758_0104	-	hypothetical protein
47.59	MEAN

5.41	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.