IslandPathversion 1.0

IslandPath Analysis: Yersinia pseudotuberculosis IP 31758



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.59 STD DEV: 5.41
Yersinia pseudotuberculosis IP 31758, complete genome - 1..4723306
4124 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 42.86	0	21..461	-	146	153948430	mioC	YpsIP31758_0001	-	flavodoxin
2	 41.56	-1	554..1015	-	153	153948571	-	YpsIP31758_0002	-	DNA-binding transcriptional regulator AsnC
3	 45.52	0	1185..2177	+	330	153947913	asnA	YpsIP31758_0003	-	asparagine synthetase AsnA
4	 47.72	0	2276..3742	-	488	153947140	-	YpsIP31758_0004	-	hypothetical protein
5	 46.85	0	3746..5284	-	512	153946819	-	YpsIP31758_0005	-	regulatory ATPase RavA
6	 45.91	0	5558..7426	+	622	153950934	kup	YpsIP31758_0006	-	potassium transport protein Kup
7	 47.86	0	7631..8050	+	139	153950326	rbsD	YpsIP31758_0007	-	D-ribose pyranase
8	 50.05	0	8101..9027	+	308	153949716	rbsK	YpsIP31758_0008	-	ribokinase
9	 51.96	0	9047..9250	+	67	153949429	-	YpsIP31758_0010	-	hypothetical protein
10	 46.53	0	9247..10671	-	474	153949117	-	YpsIP31758_0009	-	major facilitator transporter
11	 43.91	0	10751..11440	-	229	153950298	-	YpsIP31758_0011	-	GntR family transcriptional regulator
12	 49.63	0	17641..18849	+	402	153949637	-	YpsIP31758_0015	-	IS285, transposase
13	 40.64	-1	18907..19440	-	177	153950087	mobB	YpsIP31758_0016	-	molybdopterin-guanine dinucleotide biosynthesis protein B
14	 43.37	0	19437..20024	-	195	153950522	mobA	YpsIP31758_0017	-	molybdopterin-guanine dinucleotide biosynthesis protein A
15	 41.11	-1	20178..20447	+	89	153946870	-	YpsIP31758_0018	-	hypothetical protein
16	 46.50	0	20538..21524	+	328	153947234	-	YpsIP31758_0019	-	serine/threonine protein kinase
17	 42.15	-1	21552..22175	+	207	153947881	dsbA	YpsIP31758_0020	-	periplasmic protein disulfide isomerase I
18	 47.41	0	22666..25464	+	932	153948148	polA	YpsIP31758_0021	-	DNA polymerase I
19	 46.54	0	25872..26522	-	216	153948718	-	YpsIP31758_0022	-	GTPase EngB
20	 48.50	0	27266..27832	+	188	153949868	-	YpsIP31758_0023	-	hypothetical protein
21	 47.74	0	28015..29388	+	457	153950356	hemN	YpsIP31758_0024	-	coproporphyrinogen III oxidase
22	 52.80	0	29442..30854	-	470	153948743	ntrC	YpsIP31758_0025	-	nitrogen regulation protein NR(I)
23	 49.14	0	30862..31911	-	349	153949816	ntrB	YpsIP31758_0026	-	nitrogen regulation protein NR(II)
24	 50.99	0	32164..33573	-	469	153947977	glnA	YpsIP31758_0027	-	glutamine synthetase
25	 49.01	0	34135..35958	+	607	153948420	typA	YpsIP31758_0028	-	GTP-binding protein TypA/BipA
26	 44.16	0	36281..36871	+	196	153950010	-	YpsIP31758_0029	-	phosphatase
27	 47.80	0	36968..37852	+	294	153950591	rbn	YpsIP31758_0030	-	ribonuclease BN
28	 48.86	0	37859..38296	+	145	153948885	dtd	YpsIP31758_0031	-	D-tyrosyl-tRNA deacylase
29	 50.97	0	38482..39405	+	307	153949426	-	YpsIP31758_0032	-	acetyltransferase domain-containing protein
30	 47.84	0	39540..41249	-	569	153948902	-	YpsIP31758_0033	-	asmA family protein
31	 50.72	0	41396..42781	-	461	153949309	yicE	YpsIP31758_0034	-	xanthine permease
32	 36.67	-2	42780..42899	+	39	153948487	-	YpsIP31758_0035	-	hypothetical protein
33	 49.96	0	43019..44233	+	404	153947870	gltS	YpsIP31758_0036	-	sodium/glutamate symporter
34	 51.73	0	44599..46680	-	693	153947523	recG	YpsIP31758_0037	-	ATP-dependent DNA helicase RecG
35	 49.64	0	46681..47373	-	230	153947104	trmH	YpsIP31758_0038	-	tRNA guanosine-2'-O-methyltransferase
36	 48.93	0	47379..49487	-	702	153950503	spoT	YpsIP31758_0039	-	bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase
37	 51.45	0	49507..49782	-	91	153948913	rpoZ	YpsIP31758_0040	-	DNA-directed RNA polymerase subunit omega
38	 46.47	0	49837..50460	-	207	153948326	gmk	YpsIP31758_0041	-	guanylate kinase
39	 48.06	0	50861..52564	+	567	153948758	ligA2	YpsIP31758_0042	-	NAD-dependent DNA ligase LigB
40	 47.25	0	52584..53201	-	205	153947911	-	YpsIP31758_0043	-	hypothetical protein
41	 52.15	0	53942..54313	+	123	153947220	-	YpsIP31758_0044	-	hypothetical protein
42	 53.52	+1	54330..54542	-	70	153950103	-	YpsIP31758_0045	-	hypothetical protein
43	 51.08	0	54572..55174	-	200	153950543	-	YpsIP31758_0046	-	putative phage terminase, small subunit
44	 46.70	0	55921..56997	-	358	153948963	-	YpsIP31758_0047	-	hypothetical protein
45	 56.10	+1	57544..57666	-	40	153949407	-	YpsIP31758_0048	-	hypothetical protein
46	 53.99	+1	57623..58774	-	383	153948323	-	YpsIP31758_0049	-	hypothetical protein
47	 48.96	0	58771..59781	-	336	153948765	-	YpsIP31758_0050	-	hypothetical protein
48	 48.57	0	59796..60215	-	139	153947153	-	YpsIP31758_0051	-	hypothetical protein
49	 48.40	0	60215..60433	-	72	153947799	-	YpsIP31758_0052	-	AlpA family protein
50	 36.58	-2	60547..61440	-	297	153948831	-	YpsIP31758_0053	-	hypothetical protein
51	 49.57	0	61537..62805	-	422	153948267	-	YpsIP31758_0054	-	phage integrase family site specific recombinase
52	 48.15	0	62995..63858	-	287	153947343	-	YpsIP31758_0055	-	hypothetical protein
53	 51.32	0	63985..64701	+	238	153946899	rph	YpsIP31758_0056	-	ribonuclease PH
54	 50.77	0	64868..65515	+	215	153950260	pyrE	YpsIP31758_0057	-	orotate phosphoribosyltransferase
55	 48.07	0	65650..66246	-	198	153947788	-	YpsIP31758_0058	-	nucleoid occlusion protein
56	 49.12	0	66368..66823	-	151	153949654	dut	YpsIP31758_0059	-	deoxyuridine 5'-triphosphate nucleotidohydrolase
57	 48.15	0	66804..68018	-	404	153949204	coaBC	YpsIP31758_0060	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
58	 45.29	0	68215..68883	+	222	153948496	radC	YpsIP31758_0061	-	DNA repair protein RadC
59	 50.63	0	69146..69382	+	78	153948103	rpmB	YpsIP31758_0062	-	50S ribosomal protein L28
60	 39.29	-1	69394..69561	+	55	153947868	rpmG	YpsIP31758_0063	-	50S ribosomal protein L33
61	 49.01	0	69644..70453	+	269	153948540	mutM	YpsIP31758_0064	-	formamidopyrimidine-DNA glycosylase
62	 46.46	0	70459..70938	-	159	153949256	coaD	YpsIP31758_0065	-	phosphopantetheine adenylyltransferase
63	 46.62	0	70935..71717	-	260	153949864	-	YpsIP31758_0066	-	glycosyl transferase, group 2 family protein
64	 50.47	0	71718..72995	-	425	153950178	kdtA	YpsIP31758_0067	-	3-deoxy-D-manno-octulosonic-acid transferase
65	 50.72	0	73415..74380	-	321	153950792	rfaC	YpsIP31758_0068	-	ADP-heptose:LPS heptosyl transferase I
66	 51.83	0	74380..75444	-	354	153947533	rfaF	YpsIP31758_0069	-	ADP-heptose:LPS heptosyltransferase II
67	 45.23	0	75475..76407	-	310	153950729	rfaD	YpsIP31758_0070	-	ADP-L-glycero-D-mannoheptose-6-epimerase
68	 50.25	0	76653..77864	+	403	153948577	kbl	YpsIP31758_0071	-	2-amino-3-ketobutyrate coenzyme A ligase
69	 48.05	0	77874..78899	+	341	153946990	tdh	YpsIP31758_0072	-	L-threonine 3-dehydrogenase
70	 49.16	0	79037..80047	-	336	153950008	-	YpsIP31758_0073	-	divergent polysaccharide deacetylase
71	 50.11	0	80071..81441	-	456	153950447	-	YpsIP31758_0074	-	hypothetical protein
72	 50.26	0	81451..82998	-	515	153948376	gpmI	YpsIP31758_0075	-	phosphoglyceromutase
73	 45.06	0	83395..83829	+	144	153949064	-	YpsIP31758_0076	-	rhodanese domain-containing protein
74	 51.41	0	83948..84196	+	82	153947711	grxC	YpsIP31758_0077	-	glutaredoxin 3
75	 48.43	0	84284..84760	+	158	153948166	secB	YpsIP31758_0078	-	preprotein translocase subunit SecB
76	 51.47	0	84760..85779	+	339	153950159	gpsA	YpsIP31758_0079	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
77	 49.76	0	86045..86866	+	273	153950908	cysE	YpsIP31758_0080	-	serine acetyltransferase
78	 49.08	0	86989..87477	-	162	153949233	-	YpsIP31758_0081	-	RNA methyltransferase
79	 52.11	0	87666..88730	+	354	153949976	ada	YpsIP31758_0082	-	ada regulatory protein
80	 50.04	0	88798..90174	-	458	153948865	cpxA	YpsIP31758_0083	-	two-component sensor protein
81	 50.07	0	90171..90869	-	232	153948260	cpxR2	YpsIP31758_0084	-	DNA-binding transcriptional regulator CpxR
82	 46.63	0	91043..91531	+	162	153950411	-	YpsIP31758_0085	-	periplasmic stress adaptor protein CpxP
83	 51.04	0	92209..93168	+	319	153950110	-	YpsIP31758_0086	-	putative transposase
84	 48.28	0	93730..94632	+	300	153947110	fieF	YpsIP31758_0088	-	ferrous iron efflux protein F
85	 47.46	0	94850..95833	+	327	153948129	pfkA	YpsIP31758_0089	-	6-phosphofructokinase
86	 46.16	0	96054..97043	+	329	153947748	-	YpsIP31758_0090	-	sulfate transporter subunit
87	 48.78	0	97293..98069	-	258	153949458	-	YpsIP31758_0091	-	hypothetical protein
88	 44.68	0	98187..99614	-	475	153948914	-	YpsIP31758_0092	-	divalent anion:Na+ symporter (DASS) family protein
89	 54.06	+1	99680..100393	-	237	153948889	ligK	YpsIP31758_0093	-	hypothetical protein
90	 51.49	0	100390..101127	-	245	153949433	-	YpsIP31758_0094	-	GlcNAc-PI de-N-acetylase family
91	 50.16	0	101264..102499	+	411	153950051	-	YpsIP31758_0095	-	LysR family substrate binding transcriptional regulator
92	 48.96	0	102729..103496	-	255	153950628	tpiA	YpsIP31758_0096	-	triosephosphate isomerase
93	 45.53	0	103625..104239	-	204	153948825	-	YpsIP31758_0097	-	hypothetical protein
94	 51.08	0	104381..104842	+	153	153947093	-	YpsIP31758_0098	-	hypothetical protein
95	 52.34	0	105238..105984	-	248	153949807	fpr	YpsIP31758_0099	-	ferredoxin-NADP reductase
96	 52.42	0	106139..107149	-	336	153948358	glpX	YpsIP31758_0100	-	fructose 1,6-bisphosphatase II
97	 51.90	0	107418..108941	-	507	153950623	glpK	YpsIP31758_0101	-	glycerol kinase
98	 51.00	0	109118..109966	-	282	153948956	glpF	YpsIP31758_0102	-	glycerol uptake facilitator protein
99	 42.92	0	110674..110913	+	79