IslandPath Analysis: Clostridium botulinum A str. ATCC 3502



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 28.87   STD DEV: 3.98
Clostridium botulinum A str. ATCC 3502, complete genome - 1..3886916
3572 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 27.77	0	1..1347	+	448	148378012	dnaA	CBO0001	-	chromosomal replication initiator protein DnaA
2	 25.36	0	1610..2713	+	367	148378013	dnaG	CBO0002	-	DNA polymerase III, beta chain
3	 24.15	-1	2732..2938	+	68	148378014	-	CBO0003	-	S4 domain protein
4	 23.19	-1	2998..4101	+	367	148378015	recF	CBO0004	-	DNA replication and repair protein RecF
5	 28.41	0	4122..4385	+	87	148378016	-	CBO0005	-	hypothetical protein
6	 31.87	0	4403..6316	+	637	148378017	gyrB	CBO0006	-	DNA gyrase, B subunit
7	 28.79	0	6342..8852	+	836	148378018	gyrA	CBO0007	-	DNA gyrase, A subunit
8	 18.76	-2	14427..14879	+	150	148378019	-	CBO0008	-	hypothetical protein
9	 24.90	0	14895..15416	+	173	148378020	-	CBO0009	-	putative transcriptional regulator
10	 29.77	0	15517..16581	+	354	148378021	-	CBO0010	-	iron-sulfur cluster-binding protein
11	 22.74	-1	16586..19267	+	893	148378022	-	CBO0011	-	hypothetical protein
12	 22.01	-1	19404..20180	+	258	148378023	-	CBO0012	-	ErfK/YbiS/YcfS/YnhG family protein
13	 25.18	0	20205..21602	+	465	148378024	-	CBO0013	-	dehydrogenase
14	 24.29	-1	21619..21972	+	117	148378025	-	CBO0014	-	hypothetical protein
15	 29.59	0	22342..23622	+	426	148378026	serS	CBO0016	-	seryl-tRNA synthetase
16	 36.09	+1	26601..26963	+	120	148378027	-	CBO0020	-	exported protein
17	 25.21	0	27036..27884	+	282	148378028	-	CBO0021	-	ABC transporter, ATP-binding protein
18	 22.54	-1	27893..28726	+	277	148378029	-	CBO0022	-	membrane protein
19	 19.65	-2	28738..29541	+	267	148378030	-	CBO0023	-	membrane protein
20	 24.23	-1	29558..30370	+	270	148378031	-	CBO0024	-	membrane protein
21	 23.20	-1	30610..31497	-	295	148378032	psd2	CBO0025	-	phosphatidylserine decarboxylase
22	 23.14	-1	31600..33198	-	532	148378033	-	CBO0026	-	hypothetical protein
23	 23.36	-1	33274..33594	-	106	148378034	-	CBO0027	-	hypothetical protein
24	 23.98	-1	33989..35527	+	512	148378035	-	CBO0028	-	putative sensory box sigma-54 dependent transcriptional regulator
25	 33.50	+1	35687..36889	+	400	148378036	mdeA	CBO0029	-	methionine gamma-lyase
26	 26.94	0	37013..37450	+	145	148378037	-	CBO0030	-	cytidine/deoxycytidylate deaminase family protein
27	 27.92	0	38095..39720	+	541	148378038	dnaH	CBO0031	-	DNA polymerase III, gamma and tau subunits
28	 36.26	+1	39785..40126	+	113	148378039	-	CBO0032	-	hypothetical protein
29	 30.49	0	40159..40755	+	198	148378040	recR	CBO0033	-	recombination protein recR
30	 26.12	0	40785..41075	+	96	148378041	-	CBO0034	-	hypothetical protein
31	 23.75	-1	41225..41485	+	86	148378042	bofA	CBO0035	-	sigma-K factor processing regulatory protein BofA
32	 27.56	0	41636..42328	+	230	148378043	sfsA	CBO0036	-	sugar fermentation stimulation protein
33	 29.24	0	42384..42872	+	162	148378044	-	CBO0037	-	hydrolase, NUDIX family
34	 33.33	+1	42990..43712	+	240	148378045	-	CBO0038	-	hypothetical protein
35	 25.60	0	43846..44634	+	262	148378046	-	CBO0039	-	iron-sulfur cluster-binding protein
36	 28.79	0	45197..45901	+	234	148378047	-	CBO0040	-	thiF domain protein
37	 24.43	-1	45960..47093	+	377	148378048	-	CBO0041	-	major facilitator superfamily protein
38	 21.16	-1	47122..48066	+	314	148378049	-	CBO0042	-	GNAT family acetyltransferase
39	 28.31	0	53621..54217	-	198	148378050	-	CBO0042A	-	uracil-DNA glycosylase family protein
40	 25.35	0	60532..61095	+	187	148378051	-	CBO0043	-	RNA polymerase factor sigma-70
41	 27.30	0	61092..62534	+	480	148378052	-	CBO0043A	-	hypothetical protein
42	 20.92	-1	68655..68936	+	93	148378053	-	CBO0045	-	hypothetical protein
43	 28.09	0	75254..75997	+	247	148378054	-	CBO0047	-	peptidil-prolyl isomerase family protein
44	 26.88	0	81736..82479	+	247	148378055	-	CBO0048	-	NAD-dependent deacetylase
45	 27.61	0	82665..83573	-	302	148378056	-	CBO0049	-	LD-carboxypeptidase family protein
46	 25.90	0	83609..84550	-	313	148378057	-	CBO0050	-	transporter, CorA metal ion transporter family
47	 19.84	-2	84915..85418	+	167	148378058	-	CBO0051	-	hypothetical protein
48	 26.79	0	85423..86583	-	386	148378059	-	CBO0052	-	amidohydrolase
49	 25.35	0	86837..87049	+	70	148378060	-	CBO0052A	-	hypothetical protein
50	 25.60	0	87028..88476	+	482	148378061	-	CBO0053	-	Orn/Lys/Arg decarboxylase
51	 27.30	0	88500..89195	+	231	148378062	-	CBO0054	-	putative thymidylate kinase
52	 33.03	+1	89276..89605	+	109	148378063	-	CBO0055	-	hypothetical protein
53	 22.65	-1	89623..90567	+	314	148378064	-	CBO0056	-	putative DNA polymerase III, delta prime subunit
54	 29.84	0	90569..91483	+	304	148378065	-	CBO0057	-	PSP1 domain protein
55	 27.94	0	91495..91698	+	67	148378066	-	CBO0058	-	hypothetical protein
56	 41.52	+2	91780..91950	+	56	148378067	-	CBO0059	-	ferredoxin, 4Fe-4S
57	 28.34	0	92071..92811	+	246	148378068	-	CBO0060	-	hypothetical protein
58	 25.38	0	92831..93685	+	284	148378069	-	CBO0061	-	tetrapyrrole methylase family protein
59	 34.24	+1	93841..94944	+	367	148378070	-	CBO0062	-	NlpC/P60 family protein
60	 28.86	0	95044..95289	-	81	148378071	abrB	CBO0063	-	AbrB family transcriptional regulator
61	 22.88	-1	96096..96707	+	203	148378072	-	CBO0064	-	hypothetical protein
62	 29.37	0	97129..98340	+	403	148378073	arcA1	CBO0065	-	arginine deiminase
63	 28.85	0	98426..98893	-	155	148378074	ispF	CBO0066	-	2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
64	 18.02	-2	98969..99301	-	110	148378075	-	CBO0067	-	hypothetical protein
65	 26.21	0	99629..100498	+	289	148378076	-	CBO0068	-	polysaccharide deacetylase family protein
66	 23.46	-1	100767..101009	-	80	148378077	-	CBO0069	-	hypothetical protein
67	 30.21	0	101129..101704	+	191	148378078	spmA	CBO0070	-	spore maturation protein A
68	 30.83	0	101717..102235	+	172	148378079	spmB	CBO0071	-	spore maturation protein B
69	 28.33	0	102480..103817	-	445	148378080	-	CBO0072	-	MATE efflux family protein
70	 30.72	0	103961..104533	+	190	148378081	-	CBO0073	-	uracil-DNA glycosylase
71	 20.00	-2	104562..104996	+	144	148378082	-	CBO0074	-	MarR family transcriptional regulator
72	 29.67	0	105378..107315	+	645	148378083	metG	CBO0075	-	methionyl-tRNA synthetase
73	 22.44	-1	107480..108985	+	501	148378084	-	CBO0076	-	hypothetical protein
74	 28.05	0	109136..109930	+	264	148378085	-	CBO0077	-	hydrolase, TatD family
75	 32.77	0	110158..111216	+	352	148378086	-	CBO0079	-	3D/G5 domain protein
76	 32.42	0	111289..111834	+	181	148378087	-	CBO0080	-	primase-related protein
77	 27.36	0	111827..112663	+	278	148378088	ksgA	CBO0081	-	dimethyladenosine transferase
78	 26.73	0	112742..113983	+	413	148378089	-	CBO0082	-	hypothetical protein
79	 21.94	-1	114140..114727	+	195	148378090	-	CBO0083	-	hypothetical protein
80	 23.14	-1	114896..115729	+	277	148378091	-	CBO0084	-	putative lipoprotein
81	 28.91	0	115897..116958	+	353	148378092	-	CBO0085	-	macrolide ABC transporter
82	 29.89	0	116969..117664	+	231	148378093	-	CBO0086	-	macrolide ABC transporter ATP-binding protein
83	 29.61	0	117661..118869	+	402	148378094	-	CBO0087	-	macrolide ABC transporter permease
84	 32.27	0	118951..119793	+	280	148378095	-	CBO0088	-	ATP/GTP-binding-like protein
85	 31.77	0	119933..120124	+	63	148378096	-	CBO0089	-	iron-sulfur cluster-binding protein
86	 17.95	-2	120139..120333	+	64	148378097	-	CBO0090	-	membrane protein
87	 24.86	-1	120570..120746	-	58	148378098	-	CBO0091	-	hypothetical protein
88	 19.33	-2	120824..121894	+	356	148378099	-	CBO0092	-	putative diguanylate cyclase
89	 24.55	-1	121951..122679	+	242	148378100	-	CBO0093	-	Mg2+ transporter
90	 29.69	0	122969..125110	+	713	148378101	nrdD	CBO0094	-	anaerobic ribonucleoside-triphosphate reductase
91	 25.19	0	125127..125642	+	171	148378102	nrdG	CBO0095	-	anaerobic ribonucleoside-triphosphate reductase activating protein
92	 19.70	-2	126179..126853	-	224	148378103	-	CBO0096	-	hypothetical protein
93	 26.55	0	126855..127193	-	112	148378104	-	CBO0097	-	PadR family transcriptional regulator
94	 25.35	0	127314..127952	-	212	148378105	-	CBO0098	-	putative zinc-dependent hydrolase
95	 30.32	0	128388..131510	+	1040	148378106	ileS	CBO0099	-	isoleucyl-tRNA synthetase
96	 27.33	0	131661..132659	+	332	148378107	ccpA	CBO0100	-	LacI family transcriptional regulator
97	 23.86	-1	132875..136927	+	1350	148378108	-	CBO0101	-	hypothetical protein
98	 27.90	0	137002..138069	+	355	148378109	-	CBO0102	-	putative mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase
99	 28.76	0	138405..139694	+	429	148378110	-	CBO0103	-	hypothetical protein
100	 28.13	0	139699..140505	+	268	148378111	-	CBO0104	-	hypothetical protein
28.87	MEAN

3.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.