IslandPath Analysis: Shewanella sp. ANA-3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 48.59   STD DEV: 4.01
Shewanella sp. ANA-3 chromosome 1, complete sequence - 1..4972204
4111 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 47.18	0	39..659	-	206	117918460	gidB	Shewana3_0001	-	glucose-inhibited division protein B
2	 47.72	0	777..2666	-	629	117918461	-	Shewana3_0002	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
3	 47.62	0	3107..3547	-	146	117918462	-	Shewana3_0003	-	flavodoxin
4	 47.42	0	3725..5272	+	515	117918463	-	Shewana3_0004	-	TGF-beta receptor, type I/II extracellular region
5	 50.81	0	5376..6737	-	453	117918464	trmE	Shewana3_0005	-	tRNA modification GTPase TrmE
6	 45.57	0	6841..8466	-	541	117918465	-	Shewana3_0006	-	protein translocase subunit yidC
7	 48.24	0	8470..8724	-	84	117918466	-	Shewana3_0007	-	hypothetical protein
8	 43.70	-1	8691..9047	-	118	117918467	-	Shewana3_0008	-	ribonuclease P protein component
9	 46.35	0	9651..11033	+	460	117918468	dnaA	Shewana3_0009	-	chromosomal replication initiation protein
10	 45.59	0	11054..12154	+	366	117918469	-	Shewana3_0010	-	DNA polymerase III, beta subunit
11	 45.24	0	12317..13399	+	360	117918470	-	Shewana3_0011	-	DNA replication and repair protein RecF
12	 48.51	0	13416..15833	+	805	117918471	-	Shewana3_0012	-	DNA gyrase subunit B
13	 47.18	0	15916..16572	-	218	117918472	-	Shewana3_0013	-	glutathione S-transferase domain-containing protein
14	 48.06	0	16699..17547	+	282	117918473	-	Shewana3_0014	-	transcriptional regulator
15	 46.36	0	17706..18749	+	347	117918474	-	Shewana3_0015	-	putative signal transduction protein
16	 48.62	0	18813..20879	-	688	117918475	glyS	Shewana3_0016	-	glycyl-tRNA synthetase subunit beta
17	 49.23	0	20889..21794	-	301	117918476	glyQ	Shewana3_0017	-	glycyl-tRNA synthetase subunit alpha
18	 45.49	0	21913..22488	+	191	117918477	-	Shewana3_0018	-	DNA-3-methyladenine glycosylase I
19	 47.04	0	22574..25762	-	1062	117918478	-	Shewana3_0019	-	amidohydrolase
20	 51.14	0	25944..26381	-	145	117918479	-	Shewana3_0020	-	MOSC domain-containing protein
21	 46.34	0	26417..26662	-	81	117918480	-	Shewana3_0021	-	SirA family protein
22	 44.72	0	26815..28026	-	403	117918481	-	Shewana3_0022	-	diguanylate cyclase
23	 50.86	0	28251..29414	-	387	117918482	fadA	Shewana3_0023	-	3-ketoacyl-CoA thiolase
24	 49.33	0	29437..31587	-	716	117918483	fadB	Shewana3_0024	-	multifunctional fatty acid oxidation complex subunit alpha
25	 48.11	0	32031..33350	+	439	117918484	-	Shewana3_0025	-	proline dipeptidase
26	 48.62	0	33366..33980	+	204	117918485	-	Shewana3_0026	-	hypothetical protein
27	 50.34	0	34058..35515	+	485	117918486	-	Shewana3_0027	-	TrkH family potassium uptake protein
28	 46.10	0	35517..36041	+	174	117918487	-	Shewana3_0028	-	protoporphyrinogen oxidase
29	 45.95	0	36096..36404	-	102	117918488	-	Shewana3_0029	-	ArsR family transcriptional regulator
30	 49.37	0	36603..37157	+	184	117918489	-	Shewana3_0030	-	protoporphyrinogen oxidase
31	 51.14	0	37204..38646	-	480	117918490	-	Shewana3_0031	-	TrkH family potassium uptake protein
32	 51.77	0	38658..40067	-	469	117918491	trkA	Shewana3_0032	-	potassium transporter peripheral membrane component
33	 52.40	0	40083..41372	-	429	117918492	-	Shewana3_0033	-	sun protein
34	 52.56	0	41372..42328	-	318	117918493	-	Shewana3_0034	-	methionyl-tRNA formyltransferase
35	 43.98	-1	42344..42850	-	168	117918494	-	Shewana3_0035	-	peptide deformylase
36	 48.27	0	42976..44100	+	374	117918495	-	Shewana3_0036	-	peptidoglycan-binding LysM
37	 48.48	0	44184..45200	+	338	117918496	-	Shewana3_0037	-	DNA protecting protein DprA
38	 44.23	-1	45203..45679	+	158	117918497	-	Shewana3_0038	-	hypothetical protein
39	 47.16	0	45802..46365	+	187	117918498	-	Shewana3_0039	-	DNA topoisomerase type IA Zn finger domain-containing protein
40	 50.09	0	46495..47061	+	188	117918499	-	Shewana3_0040	-	translation factor SUA5
41	 49.72	0	47091..47999	+	302	117918500	-	Shewana3_0041	-	coproporphyrinogen III oxidase
42	 46.58	0	48030..48467	-	145	117918501	-	Shewana3_0042	-	globin
43	 51.76	0	48638..49516	+	292	117918502	-	Shewana3_0043	-	shikimate 5-dehydrogenase
44	 44.93	0	49537..49812	+	91	117918503	-	Shewana3_0044	-	hypothetical protein
45	 49.36	0	49888..50436	-	182	117918504	-	Shewana3_0045	-	carbonic anhydrase
46	 46.67	0	56354..56608	+	84	117918505	-	Shewana3_0046	-	hypothetical protein
47	 46.49	0	56630..57085	+	151	117918506	-	Shewana3_0047	-	BadM/Rrf2 family transcriptional regulator
48	 49.87	0	57060..57815	-	251	117918507	-	Shewana3_0048	-	protein of unknown function DUF610, YibQ
49	 48.67	0	57828..59033	-	401	117918508	-	Shewana3_0049	-	C-terminal processing peptidase-3
50	 48.85	0	59082..60215	-	377	117918509	-	Shewana3_0050	-	peptidase M23B
51	 51.07	0	60226..61770	-	514	117918510	-	Shewana3_0051	-	phosphoglyceromutase
52	 41.51	-1	61994..62470	+	158	117918511	-	Shewana3_0052	-	rhodanese domain-containing protein
53	 47.12	0	62731..63216	+	161	117918512	-	Shewana3_0053	-	preprotein translocase subunit SecB
54	 51.72	0	63221..64237	+	338	117918513	gpsA	Shewana3_0054	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
55	 51.81	0	64476..65660	+	394	117918514	-	Shewana3_0055	-	hypothetical protein
56	 39.81	-2	66383..67246	+	287	117918515	-	Shewana3_0056	-	hypothetical protein
57	 50.44	0	67824..69185	-	453	117918516	-	Shewana3_0057	-	TrkH family potassium uptake protein
58	 53.22	+1	69187..69885	-	232	117918517	-	Shewana3_0058	-	TrkA domain-containing protein
59	 53.33	+1	69930..70619	-	229	117918518	-	Shewana3_0059	-	two component transcriptional regulator
60	 52.24	0	70620..71666	-	348	117918519	-	Shewana3_0060	-	ATPase domain-containing protein
61	 56.09	+1	71895..72821	-	308	117918520	-	Shewana3_0061	-	pirin domain-containing protein
62	 50.00	0	72956..73693	+	245	117918521	-	Shewana3_0062	-	hypothetical protein
63	 49.38	0	73793..74272	+	159	117918522	-	Shewana3_0063	-	NLP/P60 protein
64	 54.04	+1	74297..75745	+	482	117918523	-	Shewana3_0064	-	major facilitator transporter
65	 47.52	0	75834..76862	+	342	117918524	-	Shewana3_0065	-	LacI family transcription regulator
66	 47.14	0	76921..78405	-	494	117918525	-	Shewana3_0066	-	alpha amylase, catalytic region
67	 46.68	0	78662..79882	+	406	117918526	-	Shewana3_0067	-	major facilitator transporter
68	 48.44	0	80143..82539	+	798	117918527	-	Shewana3_0068	-	TonB-dependent receptor
69	 49.69	0	82632..83591	+	319	117918528	-	Shewana3_0069	-	ribokinase-like domain-containing protein
70	 53.18	+1	83797..84330	+	177	117918529	mogA	Shewana3_0070	-	molybdenum cofactor biosynthesis protein
71	 52.51	0	84364..84582	-	72	117918530	-	Shewana3_0071	-	hypothetical protein
72	 48.95	0	84734..85777	+	347	117918531	-	Shewana3_0072	-	transcriptional regulator
73	 47.89	0	85781..86041	-	86	117918532	-	Shewana3_0073	-	hypothetical protein
74	 52.11	0	86091..87230	-	379	117918533	-	Shewana3_0074	-	transport protein, putative
75	 55.51	+1	87319..88053	-	244	117918534	-	Shewana3_0075	-	ABC transporter related
76	 53.40	+1	88057..89676	-	539	117918535	-	Shewana3_0076	-	TAP domain-containing protein
77	 54.10	+1	89769..90134	+	121	117918536	-	Shewana3_0077	-	GntR family transcriptional regulator
78	 54.17	+1	90181..91044	+	287	117918537	-	Shewana3_0078	-	ABC transporter related
79	 52.17	0	91041..92351	+	436	117918538	-	Shewana3_0079	-	hypothetical protein
80	 50.95	0	92480..94273	+	597	117918539	-	Shewana3_0080	-	AMP-dependent synthetase and ligase
81	 49.28	0	94414..96903	+	829	117918540	-	Shewana3_0081	-	MORN repeat-containing protein
82	 51.34	0	97011..97421	+	136	117918541	-	Shewana3_0082	-	thioesterase superfamily protein
83	 50.82	0	97540..98088	+	182	117918542	-	Shewana3_0083	-	HPP family protein
84	 49.24	0	98109..98372	-	87	117918543	-	Shewana3_0084	-	hypothetical protein
85	 46.02	0	98432..98896	-	154	117918544	-	Shewana3_0085	-	thioesterase superfamily protein
86	 48.31	0	99057..99410	+	117	117918545	-	Shewana3_0086	-	MerR family transcriptional regulator
87	 50.60	0	99482..100060	+	192	117918546	-	Shewana3_0087	-	NAD(P)H dehydrogenase (quinone)
88	 49.49	0	100076..100471	+	131	117918547	-	Shewana3_0088	-	glutathione-dependent formaldehyde-activating, GFA
89	 48.46	0	100534..101214	-	226	117918548	-	Shewana3_0089	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
90	 48.51	0	101578..102012	+	144	117918549	-	Shewana3_0090	-	hypothetical protein
91	 45.07	0	102105..103118	+	337	117918550	-	Shewana3_0091	-	hypothetical protein
92	 45.77	0	103361..104164	-	267	117918551	-	Shewana3_0092	-	integrase catalytic subunit
93	 43.43	-1	104194..104589	-	131	117918552	-	Shewana3_0093	-	transposase
94	 50.62	0	104633..105280	+	215	117918553	-	Shewana3_0094	-	hypothetical protein
95	 51.47	0	105371..107278	-	635	117918554	-	Shewana3_0095	-	hypothetical protein
96	 50.58	0	107548..107976	+	142	117918555	-	Shewana3_0096	-	MarR family transcriptional regulator
97	 49.67	0	108012..108758	+	248	117918556	-	Shewana3_0097	-	FAD-binding 9, siderophore-interacting domain-containing protein
98	 52.24	0	109462..110688	-	408	117918557	-	Shewana3_0098	-	imidazolonepropionase
99	 55.08	+1	110886..111593	+	235	117918558	-	Shewana3_0099	-	histidine utilization repressor
100	 54.46	+1	111717..113387	+	556	117918559	-	Shewana3_0100	-	urocanate hydratase
48.59	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.