IslandPath Analysis: Burkholderia cenocepacia J2315



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 66.82   STD DEV: 4.60
Burkholderia cenocepacia J2315 chromosome 1, complete genome - 1..3870082
3464 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 65.84	0	431..1645	+	404	206558404	-	BCAL0001	-	sodium/hydrogen exchanger family protein
2	 62.99	0	1660..2775	+	371	206558405	-	BCAL0002	-	carboxylate-amine ligase YbdK
3	 67.92	0	3283..3921	+	212	206558406	-	BCAL0003	-	MarR family regulatory protein
4	 70.04	0	3950..4660	+	236	206558407	-	BCAL0004	-	cysteine peptidase, family C26
5	 70.17	0	4871..5983	+	370	206558408	-	BCAL0005	-	putative NADH-dependent flavin oxidoreductase
6	 61.77	-1	6161..6691	+	176	206558409	-	BCAL0006	-	putative protein lysine methyltransferase protein
7	 70.84	0	6845..8329	-	494	206558410	-	BCAL0007	-	two-component regulatory system, sensor kinase protein
8	 66.52	0	8450..9142	-	230	206558411	-	BCAL0008	-	two-component regulatory system, response regulator protein
9	 58.01	-1	9265..9495	+	76	206558412	-	BCAL0008A	-	hypothetical protein
10	 64.72	0	9588..9896	-	102	206558413	-	BCAL0009	-	pterin-4-alpha-carbinolamine dehydratase
11	 68.90	0	10057..10950	-	297	206558414	phhA	BCAL0010	-	phenylalanine-4-hydroxylase
12	 66.67	0	11090..11575	+	161	206558415	-	BCAL0011	-	AnsC family regulatory protein
13	 67.79	0	11647..12180	-	177	206558416	-	BCAL0012	-	putative adenylate cyclase
14	 71.89	+1	12385..13284	-	299	206558417	-	BCAL0013	-	LysR family regulatory protein
15	 68.33	0	13473..15158	+	561	206558418	-	BCAL0014	-	putative GMC oxidoreductase
16	 65.51	0	15597..16376	+	259	206558419	-	BCAL0015	-	putative branched-chain amino acid ABC transporter ATP-binding protein
17	 67.86	0	16373..17128	+	251	206558420	-	BCAL0016	-	putative branched-chain amino acid ABC transporter ATP-binding protein
18	 64.42	0	17206..18405	+	399	206558421	-	BCAL0017	-	putative branched-chain amino acid ABC transporter periplasmic protein
19	 65.76	0	18538..19422	+	294	206558422	-	BCAL0018	-	putative branched-chain amino acid ABC transporter permease
20	 67.59	0	19422..20399	+	325	206558423	-	BCAL0019	-	putative branched-chain amino acid ABC transporter permease
21	 66.84	0	21481..22638	+	385	206558424	-	BCAL0020	-	putative branched-chain amino acid ABC transporter periplasmic substrate binding protein
22	 66.00	0	22845..23900	+	351	206558425	-	BCAL0021	-	putative branched-chain amino acid ABC transporter permease
23	 67.28	0	23905..25689	+	594	206558426	-	BCAL0022	-	putative branched-chain amino acid ABC transporter ATP-binding membrane protein
24	 65.99	0	25704..26444	+	246	206558427	-	BCAL0023	-	putative branched-chain amino acid ABC transporter ATP-binding protein
25	 65.20	0	26985..28955	+	656	206558428	gidA	BCAL0024	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
26	 63.76	0	28952..29638	+	228	206558429	gidB	BCAL0025	-	methyltransferase GidB
27	 63.85	0	29690..30469	+	259	206558430	-	BCAL0026	-	chromosome partitioning protein ParA
28	 66.67	0	30501..31394	+	297	206558431	-	BCAL0027	-	chromosome partitioning protein ParB
29	 67.64	0	31405..32535	+	376	206558432	-	BCAL0028	-	putative citrate transporter protein
30	 65.14	0	33104..33628	+	174	206558433	-	BCAL0029	-	putative ATP synthase protein I AtpI
31	 61.03	-1	33738..34589	+	283	206558434	atpB	BCAL0030	-	ATP synthase A chain
32	 58.52	-1	34665..34934	+	89	206558435	atpE	BCAL0031	-	ATP synthase C chain
33	 63.91	0	35064..35534	+	156	206558436	atpF	BCAL0032	-	ATP synthase B chain
34	 65.74	0	35537..36076	+	179	206558437	atpH	BCAL0033	-	ATP synthase delta chain
35	 62.97	0	36121..37662	+	513	206558438	atpA	BCAL0034	-	ATP synthase alpha chain
36	 62.67	0	37731..38606	+	291	206558439	atpG	BCAL0035	-	ATP synthase gamma chain
37	 61.94	-1	38673..40067	+	464	206558440	atpD	BCAL0036	-	ATP synthase beta chain
38	 65.26	0	40189..40614	+	141	206558441	atpC	BCAL0037	-	ATP synthase epsilon chain
39	 66.38	0	40897..42624	+	575	206558442	-	BCAL0038	-	putative long-chain-fatty-acid--CoA ligase
40	 65.19	0	43359..44171	-	270	206558443	pheC	BCAL0039	-	periplasmic cyclohexadienyl dehydratase
41	 69.32	0	44321..45415	+	364	206558444	hemE	BCAL0040	-	uroporphyrinogen decarboxylase
42	 73.17	+1	45867..48128	+	753	206558445	priA	BCAL0041	-	primosomal protein N'
43	 70.02	0	48506..52438	+	1310	206558446	putA	BCAL0042	-	bifunctional PutA protein (includes: proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase)
44	 63.77	0	52523..53662	+	379	206558447	-	BCAL0043	-	putative extracellular ligand-binding protein
45	 58.86	-1	53796..54320	+	174	206558448	-	BCAL0044	-	putative transposase
46	 56.99	-2	54320..55156	+	278	206558449	-	BCAL0045	-	putative transposase
47	 70.51	0	55228..56736	-	502	206558450	-	BCAL0046	-	putative fatty-acid CoA ligase
48	 72.29	+1	56788..58440	-	550	206558451	-	BCAL0047	-	putative acyl-CoA dehydrogenase
49	 73.99	+1	58561..59229	+	222	206558452	-	BCAL0048A	-	TetR family regulatory protein
50	 67.71	0	59441..60595	+	384	206558453	-	BCAL0049	-	putative aminotransferase
51	 60.59	-1	60764..61783	+	339	206558454	-	BCAL0050	-	putative transposase
52	 67.30	0	62070..62858	+	262	206558455	-	BCAL0051	-	periplasmic solute-binding protein
53	 71.28	0	62874..64304	+	476	206558456	-	BCAL0052	-	putative oxidoreductase
54	 69.81	0	64350..64922	-	190	206558457	-	BCAL0053	-	PadR family regulatory protein
55	 65.28	0	64991..65422	-	143	206558458	-	BCAL0054	-	MerR family regulatory protein
56	 72.02	+1	65504..68044	+	846	206558459	-	BCAL0055	-	putative heavy metal resistance membrane ATPase
57	 70.52	0	68591..69472	-	293	206558460	-	BCAL0056	-	AraC family regulatory protein
58	 67.90	0	69748..71211	+	487	206558461	-	BCAL0057	-	hypothetical protein
59	 66.81	0	71401..72813	+	470	206558462	-	BCAL0058	-	putative ethanolamine permease
60	 67.95	0	72953..74350	+	465	206558463	eutB	BCAL0059	-	ethanolamine ammonia-lyase heavy chain
61	 72.93	+1	74347..75144	+	265	206558464	eutC	BCAL0060	-	ethanolamine ammonia-lyase light chain
62	 68.81	0	75137..76021	-	294	206558465	-	BCAL0061	-	LysR family regulatory protein
63	 73.99	+1	76174..77799	+	541	206558466	-	BCAL0062	-	Major Facilitator Superfamily protein
64	 70.22	0	77942..78475	-	177	206558467	-	BCAL0063	-	putative FMN flavoprotein
65	 66.93	0	78692..80218	+	508	206558468	acoD	BCAL0064	-	acetaldehyde dehydrogenase
66	 70.49	0	80395..80943	+	182	206558469	-	BCAL0065	-	hypothetical protein
67	 72.47	+1	81149..82165	+	338	206558470	-	BCAL0066	-	AraC family regulatory protein
68	 73.04	+1	82260..83342	-	360	206558471	-	BCAL0067	-	hypothetical protein
69	 71.13	0	83354..85057	-	567	206558472	ilvG	BCAL0068	-	acetolactate synthase, large subunit
70	 69.26	0	85336..85797	+	153	206558473	-	BCAL0069	-	hypothetical protein
71	 65.96	0	85794..86078	+	94	206558474	-	BCAL0070	-	plasmid stabilisation system protein
72	 68.75	0	86236..87624	-	462	206558475	sdaA	BCAL0071	-	L-serine dehydratase I
73	 69.90	0	87655..88797	-	380	206558476	-	BCAL0072	-	hypothetical protein
74	 69.23	0	88949..91876	-	975	206558477	gcvP	BCAL0073	-	glycine dehydrogenase (decarboxylating)
75	 64.57	0	91935..92315	-	126	206558478	gcvH	BCAL0074	-	glycine cleavage system H protein
76	 66.67	0	92442..93560	-	372	206558479	gcvT	BCAL0075	-	aminomethyltransferase
77	 69.97	0	94028..94390	-	120	206558480	-	BCAL0076	-	putative lipoprotein
78	 71.42	0	94594..95646	-	350	206558481	-	BCAL0077	-	putative oxidoreductase
79	 76.41	+2	95948..96655	-	235	206558482	-	BCAL0078	-	hypothetical protein
80	 66.04	0	96966..99053	+	695	206558483	rep	BCAL0079	-	ATP-dependent DNA helicase Rep
81	 70.16	0	99160..100047	-	295	206558484	-	BCAL0080	-	putative cytochrome
82	 70.10	0	100429..101505	-	358	206558485	-	BCAL0081	-	prophage integrase
83	 67.60	0	101373..101693	-	106	206558486	-	BCAL0082	-	hypothetical protein
84	 70.14	0	102200..104992	-	930	206558487	-	BCAL0083	-	hypothetical protein
85	 76.36	+2	104998..105255	-	85	206558488	-	BCAL0083a	-	hypothetical protein
86	 67.47	0	105383..105631	-	82	206558489	-	BCAL0084	-	putative phage transcriptional activator protein
87	 69.44	0	105619..105798	-	59	206558490	-	BCAL0084a	-	hypothetical protein
88	 71.76	+1	105813..106028	-	71	206558491	-	BCAL0085	-	hypothetical protein
89	 68.90	0	106119..106610	+	163	206558492	-	BCAL0086	-	hypothetical protein
90	 61.38	-1	107182..108714	+	510	206558493	-	BCAL0087	-	putative reverse transcriptase-group II intron
91	 69.55	0	108758..109138	+	126	206558494	-	BCAL0088	-	hypothetical protein
92	 69.37	0	109326..110396	-	356	206558495	-	BCAL0089	-	phage late control gene D protein
93	 65.74	0	110393..110824	-	143	206558496	-	BCAL0090	-	putative phage tail assembly protein
94	 70.25	0	110847..113417	-	856	206558497	-	BCAL0091	-	putative phage membrane protein
95	 68.42	0	113433..113546	-	37	206558498	-	BCAL0092	-	putative phage tail-associated protein
96	 66.94	0	113555..113926	-	123	206558499	-	BCAL0093	-	putative phage tail protein
97	 61.96	-1	114003..114512	-	169	206558500	-	BCAL0094	-	phage major tail tube protein
98	 66.84	0	114541..115713	-	390	206558501	-	BCAL0095	-	putative phage major tail sheath protein
99	 71.56	+1	115768..116502	-	244	206558502	-	BCAL0096	-	hypothetical protein
100	 66.89	0	116518..119169	-	883	206558503	-	BCAL0097	-	putative phage tail protein
66.82	MEAN

4.60	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.