IslandPath Analysis: Syntrophomonas wolfei subsp. wolfei str. Goettingen



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.10   STD DEV: 4.54
Syntrophomonas wolfei subsp. wolfei str. Goettingen, complete genome - 1..2936195
2504 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.60	-1	83..1393	+	436	114565577	-	Swol_0001	-	initiation of chromosome replication
2	 36.99	-1	1450..2679	+	409	114565578	-	Swol_0002	-	DNA-directed DNA polymerase
3	 34.52	-2	2699..3796	+	365	114565579	-	Swol_0003	-	DNA repair and genetic recombination protein
4	 35.42	-2	3803..4042	+	79	114565580	-	Swol_0004	-	hypothetical protein
5	 42.48	0	4057..5958	+	633	114565581	-	Swol_0005	-	DNA topoisomerase (ATP-hydrolyzing)
6	 45.76	0	5973..8411	+	812	114565582	-	Swol_0006	-	DNA gyrase, A subunit
7	 50.17	+1	8470..9354	+	294	114565583	-	Swol_0007	-	pyridoxine biosynthesis protein
8	 46.70	0	9743..10894	+	383	114565584	-	Swol_0008	-	serine--glyoxylate transaminase
9	 48.21	0	11004..12596	+	530	114565585	-	Swol_0009	-	D-3-phosphoglycerate dehydrogenase
10	 50.08	+1	12776..14059	+	427	114565586	-	Swol_0010	-	Serine--tRNA ligase
11	 45.54	0	14740..16320	-	526	114565587	-	Swol_0011	-	putative PAS/PAC sensor protein
12	 49.30	0	16325..17464	-	379	114565588	-	Swol_0012	-	hypothetical protein
13	 52.41	+1	18168..18623	+	151	114565589	-	Swol_0013	-	hypothetical protein
14	 50.18	+1	18932..20284	+	450	114565590	-	Swol_0014	-	hypothetical protein
15	 53.75	+1	20287..21099	-	270	114565591	-	Swol_0015	-	hypothetical protein
16	 45.54	0	21440..22291	+	283	114565592	-	Swol_0016	-	hypothetical protein
17	 40.96	0	22808..23266	-	152	114565593	-	Swol_0017	-	hypothetical protein
18	 36.33	-1	23707..24207	+	166	114565594	-	Swol_0018	-	hypothetical protein
19	 39.43	-1	24209..24766	+	185	114565595	-	Swol_0019	-	hypothetical protein
20	 36.87	-1	24773..25507	+	244	114565596	-	Swol_0020	-	hypothetical protein
21	 35.27	-2	25523..26968	+	481	114565597	-	Swol_0021	-	DNA modification methylase-like protein
22	 42.17	0	27101..27949	-	282	114565598	-	Swol_0022	-	multimeric flavodoxin WrbA-like protein
23	 40.80	0	28170..28892	-	240	114565599	-	Swol_0023	-	hypothetical protein
24	 43.69	0	28889..30394	-	501	114565600	-	Swol_0024	-	transposase (25)
25	 41.26	0	30491..30919	-	142	114565601	-	Swol_0025	-	hypothetical protein
26	 35.15	-2	31006..31611	-	201	114565602	-	Swol_0026	-	TetR family transcriptional regulator
27	 39.63	-1	31931..33280	+	449	114565603	-	Swol_0027	-	hypothetical protein
28	 51.54	+1	33372..34574	+	400	114565604	-	Swol_0028	-	hypothetical protein
29	 45.52	0	34607..35443	+	278	114565605	-	Swol_0029	-	hypothetical protein
30	 45.73	0	36176..37675	+	499	114565606	-	Swol_0030	-	DNA-directed DNA polymerase
31	 46.33	0	37717..38016	+	99	114565607	-	Swol_0031	-	hypothetical protein
32	 48.65	0	38054..38647	+	197	114565608	-	Swol_0032	-	recombination protein RecR
33	 42.59	0	38718..38987	+	89	114565609	-	Swol_0033	-	hypothetical protein
34	 42.32	0	39030..39296	+	88	114565610	-	Swol_0034	-	SigmaK-factor processing regulatory BofA
35	 44.64	0	39878..40558	+	226	114565611	-	Swol_0035	-	hypothetical protein
36	 47.02	0	40637..41725	+	362	114565612	-	Swol_0036	-	putative keto/oxoacid ferredoxin oxidoreductase, alpha subunit
37	 48.41	0	41746..42501	+	251	114565613	-	Swol_0037	-	putative keto/oxoacid ferredoxin oxidoreductase, beta subunit
38	 46.60	0	42502..43089	+	195	114565614	-	Swol_0038	-	putative keto/oxoacid ferredoxin oxidoreductase, gamma subunit
39	 49.04	0	50562..52064	+	500	114565615	-	Swol_0039	-	Orn/Lys/Arg decarboxylase, major region
40	 47.39	0	52122..52754	+	210	114565616	-	Swol_0040	-	dTMP kinase
41	 43.56	0	52898..53347	+	149	114565617	-	Swol_0041	-	hypothetical protein
42	 44.86	0	53368..54330	+	320	114565618	-	Swol_0042	-	DNA polymerase III, delta prime subunit
43	 43.51	0	54585..55301	+	238	114565619	-	Swol_0043	-	hypothetical protein
44	 47.75	0	55303..55524	+	73	114565620	-	Swol_0044	-	hypothetical protein
45	 49.74	+1	55528..56283	+	251	114565621	-	Swol_0045	-	SAM-dependent methyltransferases
46	 44.48	0	56294..57145	+	283	114565622	-	Swol_0046	-	methyltransferases
47	 42.46	0	57280..57531	-	83	114565623	-	Swol_0047	-	transcription regulator AbrB
48	 46.59	0	58002..59939	+	645	114565624	-	Swol_0049	-	methionyl-tRNA synthetase
49	 48.90	0	59940..60710	+	256	114565625	-	Swol_0050	-	TatD family hydrolase
50	 45.90	0	61276..62238	+	320	114565626	-	Swol_0051	-	hypothetical protein
51	 42.60	0	62406..63020	+	204	114565627	-	Swol_0052	-	hypothetical protein
52	 44.07	0	63394..64278	+	294	114565628	-	Swol_0053	-	rRNA (adenine-N(6)-)-methyltransferase
53	 42.83	0	64268..64741	+	157	114565629	-	Swol_0054	-	hypothetical protein
54	 37.63	-1	64925..65203	+	92	114565630	-	Swol_0055	-	hypothetical protein
55	 42.57	0	65575..66408	+	277	114565631	-	Swol_0056	-	hypothetical protein
56	 40.59	0	66575..66877	+	100	114565632	-	Swol_0057	-	hypothetical protein
57	 45.95	0	66946..68277	+	443	114565633	-	Swol_0058	-	glycosyltransferase-like protein
58	 46.39	0	68335..69069	+	244	114565634	-	Swol_0059	-	hypothetical protein
59	 39.68	-1	69180..69746	+	188	114565635	-	Swol_0060	-	hypothetical protein
60	 39.27	-1	69824..70042	+	72	114565636	-	Swol_0061	-	hypothetical protein
61	 49.48	0	70204..71064	+	286	114565637	-	Swol_0062	-	hypothetical protein
62	 44.09	0	71484..72050	+	188	114565638	-	Swol_0063	-	pro-sigma-E processing factor spoIIR
63	 46.50	0	72232..73089	+	285	114565639	-	Swol_0064	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
64	 47.32	0	73182..73889	+	235	114565640	-	Swol_0065	-	GntR family transcriptional regulator
65	 44.14	0	73906..74682	+	258	114565641	-	Swol_0066	-	hypothetical protein
66	 46.89	0	74850..76199	+	449	114565642	-	Swol_0067	-	UDP-N-acetylglucosamine pyrophosphorylase
67	 46.86	0	76275..77228	+	317	114565643	-	Swol_0068	-	ribose-phosphate diphosphokinase
68	 45.87	0	77274..77903	+	209	114565644	-	Swol_0069	-	ribosomal protein L25
69	 49.28	0	77928..78479	+	183	114565645	-	Swol_0070	-	aminoacyl-tRNA hydrolase
70	 44.06	0	78850..79110	+	86	114565646	-	Swol_0072	-	hypothetical protein
71	 49.97	+1	79300..82521	+	1073	114565647	-	Swol_0073	-	transcription-repair coupling factor
72	 46.54	0	82603..83700	-	365	114565648	-	Swol_0074	-	hypothetical protein
73	 49.56	0	84289..85428	-	379	114565649	-	Swol_0075	-	hypothetical protein
74	 48.48	0	85442..85639	-	65	114565650	-	Swol_0076	-	hypothetical protein
75	 47.38	0	85752..86897	-	381	114565651	-	Swol_0077	-	hypothetical protein
76	 50.00	+1	86965..88518	-	517	114565652	-	Swol_0078	-	germination protein
77	 45.16	0	88582..89706	-	374	114565653	-	Swol_0079	-	hypothetical protein
78	 47.06	0	90252..90812	+	186	114565654	-	Swol_0080	-	AbrB family transcriptional regulator
79	 50.06	+1	91283..92836	+	517	114565655	-	Swol_0081	-	stage V sporulation protein B
80	 45.18	0	93027..93794	+	255	114565656	-	Swol_0082	-	MazG protein
81	 43.22	0	93907..94179	+	90	114565657	-	Swol_0083	-	DNA-binding protein HU (DNA-binding protein II)
82	 42.39	0	94181..94423	+	80	114565658	-	Swol_0084	-	hypothetical protein
83	 41.11	0	94606..94875	+	89	114565659	-	Swol_0085	-	hypothetical protein
84	 46.98	0	94896..95342	+	148	114565660	-	Swol_0086	-	hypothetical protein
85	 43.59	0	95394..95510	+	38	114565661	-	Swol_0087	-	sigma-24 (FecI-like)
86	 39.22	-1	95539..95793	+	84	114565662	-	Swol_0088	-	hypothetical protein
87	 43.79	0	95874..96332	+	152	114565663	-	Swol_0089	-	RNA binding S1
88	 48.33	0	96525..97391	+	288	114565664	-	Swol_0090	-	Ppx/GppA phosphatase
89	 45.01	0	97799..98680	+	293	114565665	-	Swol_0091	-	formate/nitrate transporter
90	 47.33	0	98849..99091	+	80	114565666	-	Swol_0092	-	hypothetical protein
91	 47.43	0	99163..101637	+	824	114565667	-	Swol_0093	-	phosphoprotein phosphatase
92	 48.86	0	101735..103099	+	454	114565668	-	Swol_0094	-	tRNA(Ile)-lysidine synthetase
93	 49.56	0	103565..105364	+	599	114565669	-	Swol_0095	-	ATP-dependent metalloprotease FtsH
94	 46.67	0	105539..106063	+	174	114565670	-	Swol_0096	-	HD superfamily hydrolase
95	 52.46	+1	106252..107490	+	412	114565671	-	Swol_0097	-	dihydropteroate synthase
96	 43.01	0	107483..107854	+	123	114565672	-	Swol_0098	-	dihydroneopterin aldolase; RBL03201
97	 43.23	0	107909..108403	+	164	114565673	-	Swol_0099	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase
98	 49.72	+1	108526..109422	+	298	114565674	-	Swol_0100	-	NADP oxidoreductase, coenzyme F420-dependent
99	 50.54	+1	109519..110349	+	276	114565675	-	Swol_0101	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
100	 48.17	0	110511..111359	+	282	114565676	-	Swol_0102	-	pantoate--beta-alanine ligase
45.10	MEAN

4.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.