IslandPath Analysis: Orientia tsutsugamushi str. Ikeda



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 31.48   STD DEV: 3.15
Orientia tsutsugamushi str. Ikeda, complete genome - 1..2008987
1967 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 32.43	0	457..4977	-	1506	189182908	-	OTT_0001	-	hypothetical protein
2	 29.14	0	4977..7430	-	817	189182909	virB4	OTT_0002	-	type IV secretion system protein VirB4
3	 32.25	0	7705..8721	+	338	189182910	gap	OTT_0003	-	glyceraldehyde 3-phosphate dehydrogenase
4	 32.43	0	8802..10022	+	406	189182911	pgk	OTT_0004	-	phosphoglycerate kinase
5	 25.51	-1	10036..10329	+	97	189182912	-	OTT_0005	-	hypothetical protein
6	 31.18	0	10343..11644	+	433	189182913	proS	OTT_0006	-	prolyl-tRNA synthetase
7	 32.14	0	11872..13125	-	417	189182914	clpX	OTT_0007	-	ATP-dependent Clp protease ATP-binding subunit
8	 32.81	0	13331..13900	+	189	189182915	efp	OTT_0008	-	elongation factor EF-P
9	 26.72	-1	13897..14682	+	261	189182916	suhB	OTT_0009	-	extragenic suppressor protein SuhB
10	 31.82	0	14675..15403	+	242	189182917	-	OTT_0010	-	putative glycoprotein endopeptidase
11	 30.43	0	15549..16271	+	240	189182918	-	OTT_0011	-	transposase
12	 31.94	0	16647..17726	+	359	189182919	prfA	OTT_0012	-	peptide chain release factor RF-1
13	 29.71	0	17930..18949	+	339	189182920	-	OTT_0013	-	hypothetical protein
14	 29.86	0	18946..19866	+	306	189182921	era	OTT_0014	-	GTP-binding protein Era
15	 27.05	-1	20254..20619	-	121	189182922	olmA	OTT_0015	-	hypothetical protein homologous to outer membrane lipoprotein
16	 34.30	0	20716..20922	+	68	189182923	rpmF	OTT_0016	-	50S ribosomal protein L32
17	 27.08	-1	21205..21732	-	175	189182924	cox11	OTT_0017	-	cytochrome c oxidase assembly protein cox11
18	 28.23	-1	22157..22960	+	267	189182925	yqiX	OTT_0018	-	amino acid ABC transporter substrate binding protein
19	 34.15	0	22967..23818	+	283	189182926	dapB	OTT_0019	-	dihydrodipicolinate reductase
20	 30.49	0	23882..24373	+	163	189182927	-	OTT_0020	-	hypothetical protein
21	 28.40	0	24386..27853	+	1155	189182928	-	OTT_0021	-	putative ATP-dependent helicase/nuclease
22	 30.50	0	28031..29230	+	399	189182929	gltP	OTT_0022	-	proton/sodium-glutamate symport protein
23	 28.87	0	29283..30491	+	402	189182930	pcnB	OTT_0023	-	poly(A) polymerase
24	 26.42	-1	30488..31384	+	298	189182931	znuA	OTT_0024	-	zinc/manganese ABC transporter substrate binding protein
25	 31.39	0	31920..32228	+	102	189182932	hupA	OTT_0025	-	DNA-binding protein HU
26	 27.97	-1	32411..33286	+	291	189182933	-	OTT_0026	-	hypothetical protein
27	 32.36	0	33415..34236	+	273	189182934	ksgA	OTT_0027	-	dimethyladenosine transferase
28	 27.48	-1	34297..35646	+	449	189182935	-	OTT_0028	-	DNA recombination protein RmuC homolog
29	 30.51	0	35756..36817	+	353	189182936	-	OTT_0029	-	putative membrane-associated Zn-dependent protease 1
30	 30.53	0	36830..39148	+	772	189182937	omp1	OTT_0030	-	outer membrane protein Omp1
31	 28.75	0	39171..39497	+	108	189182938	trxA	OTT_0031	-	thioredoxin
32	 25.40	-1	40730..40855	+	41	189182939	rpmJ	OTT_0032	-	50S ribosomal protein L36
33	 28.49	0	41919..42104	-	61	189182940	-	OTT_0033	-	transposase
34	 33.90	0	42282..42635	-	117	189182941	-	OTT_0034	-	transposase
35	 30.34	0	43563..43829	+	88	189182942	-	OTT_0035	-	putative conjugative transfer protein TraD
36	 30.49	0	44402..44929	+	175	189182943	-	OTT_0036	-	ankyrin repeat-containing protein 01_01
37	 35.41	+1	44733..45455	-	240	189182944	-	OTT_0037	-	putative conjugative transfer protein TraC
38	 28.96	0	45703..45885	-	60	189182945	-	OTT_0038	-	hypothetical protein
39	 33.65	0	46097..46414	-	105	189182946	-	OTT_0039	-	putative conjugative transfer protein TraE
40	 36.73	+1	46414..46737	-	107	189182947	-	OTT_0040	-	hypothetical protein
41	 33.82	0	46875..47690	-	271	189182948	-	OTT_0041	-	putative integrase
42	 29.24	0	49073..50392	+	439	189182949	-	OTT_0042	-	hypothetical protein
43	 31.71	0	50401..50523	+	40	189182950	-	OTT_0043	-	replicative DNA helicase
44	 31.33	0	51565..52014	-	149	189182951	lacA	OTT_0044	-	ribose-5-phosphate isomerase
45	 27.78	-1	52308..52847	-	179	189182952	-	OTT_0045	-	hypothetical protein
46	 31.37	0	53182..53334	-	50	189182953	-	OTT_0046	-	putative conjugative transfer protein TraD
47	 27.88	-1	54267..54431	+	54	189182954	-	OTT_0047	-	putative conjugative transfer protein TraE
48	 29.73	0	54600..54710	+	36	189182955	-	OTT_0048	-	hypothetical protein
49	 32.46	0	54830..55864	-	344	189182956	-	OTT_0049	-	ankyrin repeat-containing protein 02
50	 37.15	+1	56136..56423	+	95	189182957	-	OTT_0050	-	putative conjugative transfer protein TraU
51	 32.29	0	56557..57519	-	320	189182958	-	OTT_0051	-	transposase
52	 31.39	0	57736..58197	+	153	189182959	-	OTT_0052	-	putative transposase
53	 32.96	0	58207..59799	-	530	189182960	-	OTT_0053	-	putative conjugative transfer protein TraD
54	 36.80	+1	59964..60857	-	297	189182961	-	OTT_0054	-	putative conjugative transfer protein TraH
55	 30.91	0	60854..61018	-	54	189182962	-	OTT_0055	-	putative conjugative transfer protein TraF
56	 32.80	0	61029..61214	-	61	189182963	-	OTT_0056	-	putative conjugative transfer protein TraN
57	 32.33	0	61251..61649	-	132	189182964	-	OTT_0057	-	putative conjugative transfer protein TraN
58	 37.45	+1	61696..61962	-	88	189182965	-	OTT_0058	-	putative conjugative transfer protein TraU
59	 36.73	+1	62401..62694	-	97	189182966	-	OTT_0059	-	hypothetical protein
60	 32.56	0	62759..63145	-	128	189182967	-	OTT_0060	-	putative integrase
61	 32.29	0	63418..64380	+	320	189182968	-	OTT_0061	-	transposase
62	 29.27	0	64396..64986	-	196	189182969	-	OTT_0062	-	putative integrase
63	 31.18	0	65375..65653	+	92	189182970	-	OTT_0063	-	hypothetical protein
64	 28.27	-1	66305..66679	-	124	189182971	-	OTT_0064	-	transposase
65	 34.38	0	66691..66978	-	95	189182972	-	OTT_0065	-	transposase
66	 30.52	0	67179..67391	-	70	189182973	-	OTT_0066	-	putative conjugative transfer protein TraI
67	 29.03	0	68777..70705	-	642	189182974	-	OTT_0067	-	hypothetical protein
68	 29.07	0	70751..72649	-	632	189182975	-	OTT_0068	-	hypothetical protein
69	 28.45	0	72798..73718	+	306	189182976	-	OTT_0069	-	hypothetical protein
70	 32.01	0	73756..75111	-	451	189182977	radA	OTT_0070	-	DNA repair protein RadA homolog
71	 27.37	-1	75111..75680	-	189	189182978	-	OTT_0071	-	hypothetical protein
72	 30.86	0	75699..76184	-	161	189182979	fabZ	OTT_0072	-	(3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase
73	 28.91	0	76423..77145	+	240	189182980	-	OTT_0073	-	hypothetical protein
74	 27.60	-1	77140..77610	-	156	189182981	-	OTT_0074	-	hypothetical protein
75	 32.58	0	77941..78870	-	309	189182982	xerD	OTT_0075	-	integrase/recombinase XerD
76	 28.31	-1	79227..80600	+	457	189182983	tolC	OTT_0076	-	outer membrane protein TolC precursor
77	 25.31	-1	80645..81217	+	190	189182984	-	OTT_0077	-	hypothetical protein
78	 28.49	0	81219..83075	+	618	189182985	-	OTT_0078	-	hypothetical protein
79	 29.76	0	83123..83878	+	251	189182986	trmD	OTT_0079	-	tRNA (guanine-N1)-methyltransferase
80	 29.87	0	83875..84249	+	124	189182987	rplS	OTT_0080	-	50S ribosomal protein L19
81	 31.56	0	84276..86471	+	731	189182988	recD	OTT_0081	-	exodeoxyribonuclease V alpha subunit
82	 28.90	0	87475..88377	+	300	189182989	ilvE	OTT_0082	-	branched-chain amino acid aminotransferase
83	 32.89	0	88358..89254	+	298	189182990	dapA	OTT_0083	-	dihydrodipicolinate synthase
84	 30.30	0	89257..89718	+	153	189182991	smpB	OTT_0084	-	small protein B homolog
85	 31.90	0	89738..90646	+	302	189182992	sppA	OTT_0085	-	protease IV
86	 34.98	+1	90657..91565	+	302	189182993	lipA	OTT_0086	-	lipoic acid synthetase
87	 29.31	0	91586..92032	+	148	189182994	-	OTT_0087	-	hypothetical protein
88	 25.85	-1	92016..92750	+	244	189182995	purC	OTT_0088	-	phosphoribosylaminoimidazole-succinocarboxamide synthase
89	 28.40	0	93230..93472	+	80	189182996	-	OTT_0089	-	transposase
90	 28.70	0	93889..94233	+	114	189182997	-	OTT_0090	-	putative integrase
91	 29.82	0	94443..94784	+	113	189182998	-	OTT_0091	-	putative integrase
92	 33.33	0	95455..95604	+	49	189182999	-	OTT_0092	-	hypothetical protein
93	 30.56	0	95604..95747	+	47	189183000	-	OTT_0093	-	putative conjugative transfer protein TraE
94	 30.86	0	95834..96157	+	107	189183001	-	OTT_0094	-	putative conjugative transfer protein TraE
95	 28.38	0	96154..96456	+	100	189183002	-	OTT_0095	-	hypothetical protein
96	 28.57	0	96456..96560	+	34	189183003	-	OTT_0096	-	hypothetical protein
97	 40.35	+2	96672..96899	+	75	189183004	-	OTT_0097	-	putative conjugative transfer protein TraB
98	 35.56	+1	96862..97131	+	89	189183005	-	OTT_0098	-	putative conjugative transfer protein TraB
99	 30.91	0	97131..97460	+	109	189183006	-	OTT_0099	-	hypothetical protein
100	 35.35	+1	97372..99453	+	693	189183007	-	OTT_0100	-	putative conjugative transfer protein TraC
31.48	MEAN

3.15	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.