IslandPath Analysis: Corynebacterium jeikeium K411



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 61.70   STD DEV: 3.98
Corynebacterium jeikeium K411, complete genome - 1..2462499
2104 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 58.11	0	1..1752	+	583	68535063	dnaA	jk0001	-	chromosomal replication initiator protein
2	 60.59	0	2369..3553	+	394	68535064	dnaN	jk0002	-	DNA polymerase III subunit beta
3	 59.39	0	3596..4873	+	425	68535065	recF	jk0003	-	recombination protein F
4	 62.31	0	4863..5390	+	175	68535066	-	jk0004	-	hypothetical protein
5	 61.78	0	5501..7525	+	674	68535067	gyrB	jk0005	-	DNA gyrase subunit B
6	 62.87	0	7535..8536	+	333	68535068	-	jk0006	-	hypothetical protein
7	 66.35	+1	8656..9282	-	208	68535069	sapE	jk0007	-	putative surface-anchored protein
8	 61.79	0	9482..10690	-	402	68535070	-	jk0008	-	putative iron-dependent peroxidase
9	 64.13	0	10780..12039	-	419	68535071	-	jk0009	-	putative lipoprotein involved in iron transport
10	 61.68	0	12067..14013	-	648	68535072	acpA	jk0010	-	putative acid phosphatase
11	 64.12	0	14296..16809	+	837	68535073	gyrA	jk0011	-	DNA gyrase subunit A
12	 62.54	0	16966..17619	+	217	68535074	-	jk0012	-	hypothetical protein
13	 53.33	-2	18228..18362	+	44	68535075	tnp3526	jk0013	-	transposase for IS3526
14	 54.00	-1	18526..20427	-	633	68535076	-	jk0014	-	hypothetical protein
15	 55.02	-1	21010..22134	+	374	68535077	tnp1513a	jk0015	-	transposase for IS1513a
16	 66.92	+1	22211..23395	+	394	68535078	mntH1	jk0016	-	manganese transporter NRAMP
17	 66.92	+1	23416..23805	+	129	68535079	utp1	jk0017	-	NUDIX protein
18	 58.85	0	23868..24443	+	191	68535080	-	jk0018	-	TetR family transcriptional regulator
19	 58.95	0	24440..24802	+	120	68535081	-	jk0019	-	hypothetical protein
20	 55.14	-1	24891..25133	+	80	68535082	-	jk0020	-	hypothetical protein
21	 55.11	-1	25839..26963	+	374	68535083	tnp1513b	jk0021	-	transposase for IS1513b
22	 56.63	-1	26973..27221	-	82	68535084	ypkF	jk0022	-	hypothetical protein
23	 64.97	0	27414..29126	-	570	68535085	-	jk0023	-	hypothetical protein
24	 54.93	-1	29201..29737	+	178	68535086	-	jk0024	-	hypothetical protein
25	 59.80	0	29772..30368	+	198	68535087	sigK	jk0025	-	ECF family RNA polymerase sigma factor K
26	 65.36	0	30365..31132	+	255	68535088	-	jk0026	-	hypothetical protein
27	 62.07	0	31297..31557	+	86	68535089	-	jk0027	-	hypothetical protein
28	 63.70	0	31573..33492	+	639	68535090	-	jk0028	-	hypothetical protein
29	 62.43	0	33502..34185	-	227	68535091	-	jk0029	-	TetR family transcriptional regulator
30	 56.39	-1	34417..35808	+	463	68535092	-	jk0030	-	putative DNA-binding protein
31	 65.44	0	35910..37373	-	487	68535093	pabB	jk0031	-	para-aminobenzoate synthase component I
32	 63.69	0	37513..38988	-	491	68535094	-	jk0032	-	hypothetical protein
33	 62.10	0	39145..39669	+	174	68535095	ppiA	jk0033	-	peptidyl-prolyl cis-trans isomerase
34	 60.61	0	39677..40402	+	241	68535096	-	jk0034	-	hypothetical protein
35	 56.78	-1	40429..40701	-	90	68535097	-	jk0035	-	putative septation inhibitor protein
36	 62.28	0	40841..41569	+	242	68535098	pabA	jk0036	-	para-aminobenzoate synthase component II
37	 62.89	0	41595..43763	-	722	68535099	pknB	jk0037	-	serine/threonine protein kinase PknB
38	 63.59	0	43921..45543	-	540	68535100	pknA	jk0038	-	serine/threonine protein kinase PknA
39	 62.59	0	45547..46995	-	482	68535101	pbp2A	jk0039	-	putative penicillin-binding protein 2
40	 60.24	0	46992..48299	-	435	68535102	rodA	jk0040	-	cell division protein RodA
41	 62.40	0	48303..49874	-	523	68535103	ppp	jk0041	-	hypothetical protein
42	 60.04	0	49871..50368	-	165	68535104	-	jk0042	-	hypothetical protein
43	 62.30	0	50548..51828	-	426	68535105	-	jk0043	-	hypothetical protein
44	 58.78	0	52425..53603	-	392	68535106	tnp1249a	jk0044	-	transposase for IS1249a
45	 53.74	-1	54224..54811	+	195	68535107	-	jk0045	-	hypothetical protein
46	 57.38	-1	54878..55480	-	200	68535108	-	jk0046	-	putative ThiJ/PfpI family protein
47	 59.24	0	55473..56441	-	322	68535109	-	jk0047	-	hypothetical protein
48	 58.73	0	56526..57029	+	167	68535110	-	jk0048	-	hypothetical protein
49	 63.19	0	57190..57333	+	47	68535111	-	jk0049	-	hypothetical protein
50	 62.20	0	57426..58007	+	193	68535112	-	jk0050	-	hypothetical protein
51	 65.24	0	58288..58638	+	116	68535113	rpfC	jk0051	-	resuscitation-promoting factor RpfC
52	 60.16	0	58680..59447	-	255	68535114	-	jk0052	-	hypothetical protein
53	 63.27	0	59607..60401	+	264	68535115	-	jk0053	-	putative secreted protein
54	 61.21	0	60409..61050	-	213	68535116	alkA	jk0054	-	3-methyladenine DNA glycosylase
55	 63.14	0	61219..62382	+	387	68535117	metB	jk0055	-	cystathionine gamma-synthase
56	 66.67	+1	62395..62811	+	138	68535118	-	jk0056	-	hypothetical protein
57	 59.81	0	62816..63880	-	354	68535119	-	jk0057	-	hypothetical protein
58	 57.80	0	64088..65113	-	341	68535120	-	jk0058	-	hypothetical protein
59	 63.07	0	65259..66065	+	268	68535121	-	jk0059	-	putative oxidoreductase
60	 64.81	0	66128..66505	-	125	68535122	-	jk0060	-	hypothetical protein
61	 52.39	-2	66554..69145	-	863	68535123	-	jk0061	-	putative helicase
62	 57.55	-1	69256..70494	-	412	68535124	tnp3506a	jk0062	-	transposase for IS3506a
63	 49.14	-2	70599..70889	-	96	68535126	-	jk0063	-	putative helicase
64	 54.55	-1	70888..71382	+	164	68535125	-	jk0064	-	hypothetical protein
65	 66.30	+1	71411..72226	+	271	68535127	-	jk0065	-	NAD-dependent deacetylase
66	 61.20	0	72270..74666	-	798	68535128	-	jk0066	-	hypothetical protein
67	 62.37	0	74766..75323	-	185	68535129	gca	jk0067	-	gamma-type carbonic anhydratase-like protein
68	 62.82	0	75413..75958	+	181	68535130	-	jk0068	-	hypothetical protein
69	 64.97	0	75981..76334	-	117	68535131	-	jk0069	-	hypothetical protein
70	 64.09	0	76469..77440	+	323	68535132	-	jk0070	-	putative dioxygenase related to 2-nitropropane dioxygenases
71	 56.77	-1	77566..77949	+	127	68535133	-	jk0071	-	hypothetical protein
72	 63.96	0	77975..79045	-	356	68535134	-	jk0072	-	putative polyhydroxybutyrate depolymerase
73	 57.55	-1	79157..79474	+	105	68535135	-	jk0073	-	hypothetical protein
74	 63.58	0	80309..80989	+	226	68535136	tagA	jk0074	-	DNA-3-methyladenine glycosidase I
75	 65.69	0	81044..83386	-	780	68535138	fadH	jk0075	-	2,4-dienoyl-CoA reductase
76	 64.41	0	83740..88347	+	1535	68535139	gltB	jk0076	-	glutamate synthase (NADPH) large chain
77	 66.21	+1	88348..89886	+	512	68535140	gltD	jk0077	-	glutamate synthase subunit beta
78	 63.86	0	89937..90578	+	213	68535141	rhtC	jk0078	-	hypothetical protein
79	 62.70	0	90599..90976	+	125	68535142	-	jk0079	-	hypothetical protein
80	 66.31	+1	91075..91920	+	281	68535143	-	jk0080	-	hypothetical protein
81	 65.86	+1	91979..94081	-	700	68535144	-	jk0081	-	putative endopeptidase
82	 61.70	0	94134..95039	+	301	68535145	-	jk0082	-	hypothetical protein
83	 59.44	0	95032..96000	+	322	68535146	-	jk0083	-	hypothetical protein
84	 63.42	0	96124..97539	+	471	68535147	-	jk0084	-	putative lysozyme precursor
85	 60.92	0	98157..101621	-	1154	68535148	embC	jk0085	-	putative arabinosyl transferase
86	 60.17	0	101739..103784	-	681	68535149	-	jk0086	-	hypothetical protein
87	 63.94	0	103849..105204	-	451	68535150	-	jk0087	-	hypothetical protein
88	 58.13	0	105392..105766	+	124	68535151	-	jk0088	-	GntR family transcriptional regulator
89	 62.06	0	105763..106695	+	310	68535152	-	jk0089	-	putative ABC transport system, ATP-binding protein
90	 56.35	-1	106698..107996	+	432	68535153	-	jk0090	-	putative ABC transport system, permease protein
91	 56.28	-1	114202..114615	+	137	68535156	tnp3503d1	jk0091	-	transposase for IS3503d
92	 57.55	-1	114720..115958	+	412	68535157	tnp3506b	jk0092	-	transposase for IS3506b
93	 54.40	-1	116329..116760	+	143	68535158	tnp3503d2	jk0093	-	transposase for IS3503d
94	 56.60	-1	116808..117125	+	105	68535159	tnp3504a1	jk0094	-	transposase for IS3504a
95	 53.64	-2	117122..118042	+	306	68535160	tnp3504a2	jk0095	-	transposase for IS3504a
96	 51.61	-2	118035..118127	+	30	68535161	tnp3503d3	jk0096	-	transposase for IS3503d
97	 57.40	-1	118543..119697	+	384	68535162	-	jk0097	-	major facilitator superfamily permease
98	 60.77	0	119710..120726	-	338	68535163	-	jk0098	-	putative pseudouridylate synthase
99	 60.71	0	120736..120903	+	55	68535164	-	jk0099	-	hypothetical protein
100	 61.18	0	121066..121977	+	303	68535165	uspA1	jk0100	-	putative universal stress protein
61.70	MEAN

3.98	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.