IslandPath Analysis: Psychrobacter arcticus 273-4



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.09   STD DEV: 3.30
Psychrobacter arcticus 273-4, complete genome - 1..2650701
2120 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 38.17	-1	520..1965	+	481	71064582	dnaA	Psyc_0001	-	chromosomal replication initiator protein DnaA
2	 42.94	0	2125..3300	+	391	71064583	dnaN	Psyc_0002	-	DNA polymerase III, beta subunit
3	 42.88	0	3463..4677	+	404	71064584	recF	Psyc_0003	-	DNA replication and repair protein RecF
4	 44.07	0	5179..7794	+	871	71064585	gyrB	Psyc_0004	-	DNA gyrase subunit B
5	 42.93	0	7907..8500	+	197	71064586	-	Psyc_0005	-	hypothetical protein
6	 38.04	-1	8586..9371	-	261	71064587	-	Psyc_0006	-	IS3 family transposase
7	 45.28	0	9413..9931	-	172	71064588	-	Psyc_0007	-	IS3/IS911 family transposase orfA
8	 45.28	0	10178..11215	-	345	71064589	-	Psyc_0008	-	putative SAM-dependent methyltransferase
9	 48.17	+1	11806..13416	+	536	71064590	guaA	Psyc_0009	-	bifunctional GMP synthase/glutamine amidotransferase protein
10	 33.41	-2	13573..14865	+	430	71064591	-	Psyc_0010	-	hypothetical protein
11	 47.86	+1	14993..15997	-	334	71064592	-	Psyc_0011	-	Zinc-containing alcohol dehydrogenase
12	 47.24	0	16221..17198	-	325	71064593	-	Psyc_0012	-	nuclear receptor binding factor related protein
13	 45.88	0	17341..17595	-	84	71064594	-	Psyc_0013	-	hypothetical protein
14	 47.89	+1	18119..19162	-	347	71064595	-	Psyc_0014	-	2-nitropropane dioxygenase protein
15	 30.54	-2	19335..20621	-	428	71064596	-	Psyc_0015	-	hypothetical protein
16	 44.78	0	20634..20930	+	98	71064597	-	Psyc_0016	-	IS3/IS911 family transposase OrfA
17	 44.69	0	20981..21799	+	272	71064598	-	Psyc_0017	-	IS30 family transposase
18	 32.72	-2	21800..22450	-	216	71064599	-	Psyc_0018	-	hypothetical protein
19	 32.75	-2	22443..22952	-	169	71064600	-	Psyc_0019	-	hypothetical protein
20	 34.76	-2	22945..23997	-	350	71064601	-	Psyc_0020	-	hypothetical protein
21	 44.71	0	24177..24554	-	125	71064602	-	Psyc_0021	-	hypothetical protein
22	 45.39	0	24825..25877	-	350	71064603	-	Psyc_0022	-	hypothetical protein
23	 46.90	0	26178..26774	-	198	71064604	-	Psyc_0023	-	hypothetical protein
24	 45.56	0	26978..27697	+	239	71064605	-	Psyc_0024	-	ribosomal small subunit pseudouridine synthase A
25	 45.49	0	28179..29264	+	361	71064606	-	Psyc_0025	-	hypothetical protein
26	 44.85	0	29409..30059	-	216	71064607	-	Psyc_0026	-	hypothetical protein
27	 46.93	0	30543..31667	+	374	71064608	-	Psyc_0027	-	chaperone protein dnaJ
28	 47.55	+1	31996..32832	+	278	71064609	dapB	Psyc_0028	-	dihydrodipicolinate reductase
29	 43.11	0	32915..34090	-	391	71064610	-	Psyc_0029	-	ornithine decarboxylase
30	 42.70	0	34198..34752	-	184	71064611	def	Psyc_0030	-	peptide deformylase
31	 43.92	0	35124..35378	-	84	71064612	-	Psyc_0031	-	hypothetical protein
32	 44.20	0	35713..37230	-	505	71064613	mpl	Psyc_0032	-	putative UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
33	 40.54	-1	37523..38146	-	207	71064614	-	Psyc_0033	-	hypothetical protein
34	 45.20	0	38341..38871	-	176	71064615	dsbB	Psyc_0034	-	disulfide bond formation protein
35	 43.94	0	38926..40509	-	527	71064616	gshA	Psyc_0035	-	glutamate-cysteine ligase
36	 47.77	+1	40901..41281	-	126	71064617	-	Psyc_0036	-	iron-sulfur cluster insertion protein ErpA
37	 47.00	0	41787..43805	+	672	71064618	-	Psyc_0037	-	ABC transporter ATPase
38	 40.65	-1	43911..44279	-	122	71064619	rlpA	Psyc_0038	-	putative lipoprotein A
39	 45.35	0	44824..45822	+	332	71064620	-	Psyc_0039	-	heat shock protein DnaJ
40	 46.91	0	45908..46231	+	107	71064621	-	Psyc_0040	-	hypothetical protein
41	 45.97	0	46320..47522	-	400	71064622	sstT	Psyc_0041	-	serine/threonine transporter SstT
42	 40.74	-1	47861..48319	-	152	71064623	holC	Psyc_0042	-	DNA polymerase III, chi subunit
43	 44.54	0	48355..50013	-	552	71064624	pepA	Psyc_0043	-	PepA aminopeptidase
44	 44.55	0	50261..50866	-	201	71064625	-	Psyc_0044	-	isochorismatase hydrolase
45	 45.08	0	51384..52634	+	416	71064626	-	Psyc_0045	-	hypothetical protein
46	 44.00	0	52634..53842	+	402	71064627	-	Psyc_0046	-	hypothetical protein
47	 41.71	0	53920..54528	-	202	71064628	-	Psyc_0047	-	hypothetical protein
48	 42.37	0	55288..55752	-	154	71064629	-	Psyc_0048	-	hypothetical protein
49	 41.38	0	55758..56192	-	144	71064630	-	Psyc_0049	-	hypothetical protein
50	 41.45	0	56291..57226	+	311	71064631	-	Psyc_0050	-	LysR family transcriptional regulator
51	 44.17	0	57548..59107	+	519	71064632	-	Psyc_0051	-	hypothetical protein
52	 48.24	+1	59255..60193	-	312	71064633	xerD	Psyc_0052	-	phage integrase
53	 49.22	+1	60448..61662	-	404	71064634	-	Psyc_0053	-	hypothetical protein
54	 40.23	-1	61869..62129	-	86	71064635	-	Psyc_0054	-	hypothetical protein
55	 42.30	0	62205..62717	-	170	71064636	-	Psyc_0055	-	hypothetical protein
56	 44.01	0	62796..63329	-	177	71064637	-	Psyc_0056	-	hypothetical protein
57	 46.28	0	63380..63943	-	187	71064638	algH	Psyc_0057	-	putative transcriptional regulator
58	 47.92	+1	64062..65741	-	559	71064639	recN	Psyc_0058	-	DNA repair protein
59	 45.24	0	66427..66762	+	111	71064640	-	Psyc_0059	-	hypothetical protein
60	 48.51	+1	66968..67738	+	256	71064641	-	Psyc_0060	-	RNA methyltransferase
61	 47.33	0	67701..68393	-	230	71064642	coaE	Psyc_0061	-	dephospho-CoA kinase
62	 42.44	0	68477..69376	-	299	71064643	pilD	Psyc_0062	-	type 4 prepilin peptidase 1. Aspartic peptidase. MEROPS family A24A
63	 43.87	0	69402..70625	-	407	71064644	pilC	Psyc_0063	-	pilin secretion/fimbrial assembly system protein, PilC
64	 44.26	0	70862..72637	-	591	71064645	pilB	Psyc_0064	-	pilin secretion/fimbrial assembly system protein, PilB
65	 46.54	0	73127..73936	+	269	71064646	tpiA	Psyc_0065	-	triosephosphate isomerase
66	 49.19	+1	74165..74473	+	102	71064647	secG	Psyc_0066	-	preprotein translocase subunit SecG
67	 43.11	0	75377..75877	+	166	71064648	-	Psyc_0067	-	hypothetical protein
68	 43.43	0	76010..77494	+	494	71064649	nusA	Psyc_0068	-	transcription elongation factor NusA
69	 45.76	0	77646..80372	+	908	71064650	infB	Psyc_0069	-	translation initiation factor IF-2
70	 43.95	0	80587..80991	+	134	71064651	rbfA	Psyc_0070	-	ribosome-binding factor A
71	 40.51	-1	81008..82150	+	380	71064652	truB	Psyc_0071	-	tRNA pseudouridine synthase B
72	 40.86	0	82492..82677	+	61	71064653	-	Psyc_0072	-	hypothetical protein
73	 44.19	0	83015..83281	+	88	71064654	rpsO	Psyc_0073	-	30S ribosomal protein S15
74	 44.65	0	83907..86009	+	700	71064655	pnp	Psyc_0074	-	polynucleotide phosphorylase/polyadenylase
75	 39.36	-1	86116..86397	-	93	71064656	-	Psyc_0075	-	hypothetical protein
76	 41.91	0	86461..87066	-	201	71064657	-	Psyc_0076	-	hypothetical protein
77	 45.88	0	87218..87472	-	84	71064658	-	Psyc_0077	-	hypothetical protein
78	 44.83	0	87473..89698	-	741	71064659	prlC	Psyc_0078	-	oligopeptidase A
79	 43.49	0	90323..91435	+	370	71064660	-	Psyc_0079	-	hypothetical protein
80	 40.59	-1	91496..92404	+	302	71064661	-	Psyc_0080	-	hypothetical protein
81	 45.05	0	92464..93462	+	332	71064662	-	Psyc_0081	-	hypothetical protein
82	 41.42	0	93498..94115	-	205	71064663	alkB	Psyc_0082	-	DNA-N1-methyladenine dioxygenase
83	 44.72	0	94165..96078	-	637	71064664	-	Psyc_0083	-	eflux ABC transporter inner membrane protein
84	 45.70	0	96361..97209	+	282	71064665	-	Psyc_0084	-	hypothetical protein
85	 44.22	0	97383..98273	+	296	71064666	-	Psyc_0085	-	fructose-1,6-bisphosphate aldolase
86	 47.35	0	98385..100460	-	691	71064667	thiC	Psyc_0086	-	thiamine biosynthesis protein ThiC
87	 43.30	0	100903..101193	-	96	71064668	-	Psyc_0087	-	hypothetical protein
88	 47.53	+1	101502..102875	-	457	71064669	argH	Psyc_0088	-	argininosuccinate lyase
89	 46.82	0	103385..104422	+	345	71064670	hemC	Psyc_0089	-	hydroxymethylbilane synthase
90	 48.78	+1	104539..105522	+	327	71064671	hemD	Psyc_0090	-	uroporphyrinogen-III synthase
91	 43.85	0	105653..106612	+	319	71064672	-	Psyc_0091	-	hypothetical protein
92	 45.47	0	106671..107156	+	161	71064673	-	Psyc_0092	-	hypothetical protein
93	 47.26	0	107401..108513	-	370	71064674	ribB	Psyc_0093	-	GTP cyclohydrolase II / 3,4-dihydroxy-2-butanone 4-phosphate synthase
94	 47.29	0	108765..110054	-	429	71064675	-	Psyc_0094	-	recombination factor protein RarA
95	 44.51	0	110387..110878	+	163	71064676	-	Psyc_0095	-	hypothetical protein
96	 43.43	0	110986..111837	+	283	71064677	-	Psyc_0096	-	hypothetical protein
97	 44.11	0	111902..113182	-	426	71064678	gltA	Psyc_0097	-	citrate synthase
98	 42.89	0	114223..114609	+	128	71064679	sdhC	Psyc_0098	-	succinate dehydrogenase subunit C
99	 46.42	0	114609..115013	+	134	71064680	sdhD	Psyc_0099	-	succinate dehydrogenase subunit D
100	 47.27	0	115192..117042	+	616	71064681	sdhA	Psyc_0100	-	succinate dehydrogenase flavoprotein subunit
44.09	MEAN

3.30	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.