IslandPath Analysis: Ralstonia metallidurans CH34



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 63.96   STD DEV: 3.54
Ralstonia metallidurans CH34 chromosome 1, complete sequence - 1..3928089
3601 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.33	0	104..1843	+	579	94308946	dnaA	Rmet_0001	-	chromosomal replication initiation protein
2	 60.30	-1	2220..3335	+	371	94308947	-	Rmet_0002	-	DNA polymerase III subunit beta
3	 63.14	0	3521..6046	+	841	94308948	gyrB	Rmet_0003	-	DNA gyrase subunit B
4	 54.14	-2	6990..8099	+	369	94308949	-	Rmet_0004	-	hypothetical protein
5	 64.96	0	8367..10121	-	584	94308950	-	Rmet_0005	-	twin-arginine translocation pathway signal
6	 65.38	0	10260..11189	-	309	94308951	-	Rmet_0006	-	hypothetical protein
7	 66.67	0	11295..12113	-	272	94308952	-	Rmet_0007	-	AraC family transcriptional regulator
8	 60.92	0	12151..13038	-	295	94308953	-	Rmet_0008	-	binding-protein-dependent transport systems inner membrane component
9	 61.74	0	13040..13972	-	310	94308954	-	Rmet_0009	-	binding-protein-dependent transport systems inner membrane component
10	 64.16	0	13969..15006	-	345	94308955	-	Rmet_0010	-	ABC transporter-related protein
11	 63.58	0	15026..16420	-	464	94308956	-	Rmet_0011	-	twin-arginine translocation pathway signal
12	 64.09	0	16618..17277	-	219	94308957	-	Rmet_0012	-	isoprenylcysteine carboxyl methyltransferase
13	 60.22	-1	17396..17752	+	118	94308958	-	Rmet_0013	-	hypothetical protein
14	 63.20	0	17884..18834	+	316	94308959	-	Rmet_0014	-	hypothetical protein
15	 65.64	0	18848..19531	+	227	94308960	-	Rmet_0015	-	DEAD/DEAH box helicase-like protein
16	 58.28	-1	19721..20161	+	146	94308961	-	Rmet_0016	-	signal-transduction protein
17	 68.49	+1	20369..21955	+	528	94308962	-	Rmet_0017	-	EmrB/QacA family drug resistance transporter
18	 63.64	0	22066..22692	+	208	94308963	-	Rmet_0018	-	glutathione peroxidase
19	 62.92	0	22853..23626	+	257	94308964	-	Rmet_0019	-	beta-lactamase-like protein
20	 66.67	0	23692..24558	+	288	94308965	-	Rmet_0020	-	fumarylacetoacetate (FAA) hydrolase
21	 64.87	0	24791..26068	+	425	94308966	-	Rmet_0021	-	peptidase M20D, amidohydrolase
22	 67.40	0	26084..26902	-	272	94308967	-	Rmet_0022	-	AraC family transcriptional regulator
23	 64.96	0	27028..28257	+	409	94308968	-	Rmet_0023	-	major facilitator transporter
24	 65.68	0	28320..29636	-	438	94308969	-	Rmet_0024	-	glutamate carboxypeptidase
25	 69.55	+1	29809..30120	+	103	94308970	-	Rmet_0025	-	hypothetical protein
26	 66.76	0	30161..31252	+	363	94308971	-	Rmet_0026	-	hypothetical protein
27	 67.19	0	31311..32078	-	255	94308972	-	Rmet_0027	-	two component transcriptional regulator
28	 65.30	0	32264..33070	+	268	94308973	-	Rmet_0028	-	two component transcriptional regulator
29	 61.51	0	33083..33877	-	264	94308974	-	Rmet_0029	-	porin
30	 60.00	-1	33977..34276	+	99	94308975	-	Rmet_0030	-	transposase IS3/IS911
31	 61.74	0	34273..35166	+	297	94308976	-	Rmet_0031	-	integrase catalytic subunit
32	 59.82	-1	35163..35498	-	111	94308977	-	Rmet_0032	-	porin
33	 57.65	-1	35919..36173	-	84	94308978	-	Rmet_0033	-	cell division topological specificity factor MinE
34	 61.01	0	36189..37001	-	270	94308979	-	Rmet_0034	-	septum site-determining protein MinD
35	 67.02	0	37050..37898	-	282	94308980	-	Rmet_0035	-	septum formation inhibitor
36	 62.42	0	37986..39068	+	360	94308981	-	Rmet_0036	-	Mg2+ transporter protein, CorA-like protein
37	 64.66	0	39303..39551	-	82	94308982	-	Rmet_0037	-	hypothetical protein
38	 64.21	0	39542..41374	+	610	94308983	-	Rmet_0038	-	potassium-transporting ATPase subunit A
39	 66.31	0	41393..43624	+	743	94308984	-	Rmet_0039	-	potassium-translocating P-type ATPase, B subunit
40	 64.87	0	43646..44257	+	203	94308985	-	Rmet_0040	-	potassium-transporting ATPase, C subunit
41	 67.08	0	44406..47309	+	967	94308986	-	Rmet_0041	-	osmosensitive K+ channel signal transduction histidine kinase
42	 66.38	0	47311..48006	+	231	94308987	-	Rmet_0042	-	two component transcriptional regulator
43	 68.50	+1	48145..48855	+	236	94308988	-	Rmet_0043	-	Sel1
44	 67.80	+1	48933..51581	+	882	94308989	-	Rmet_0044	-	hypothetical protein
45	 65.67	0	51578..52480	+	300	94308990	-	Rmet_0045	-	transglutaminase-like protein
46	 64.88	0	52552..54006	-	484	94308991	gatB	Rmet_0046	-	aspartyl/glutamyl-tRNA amidotransferase subunit B
47	 71.62	+2	54086..55156	-	356	94308992	-	Rmet_0047	-	dienelactone hydrolase
48	 68.14	+1	55190..55663	-	157	94308993	-	Rmet_0048	-	putative lipoprotein
49	 68.40	+1	55671..57170	-	499	94308994	gatA	Rmet_0049	-	aspartyl/glutamyl-tRNA amidotransferase subunit A
50	 66.00	0	57222..57521	-	99	94308995	gatC	Rmet_0050	-	aspartyl/glutamyl-tRNA amidotransferase subunit C
51	 64.27	0	58487..59530	+	347	94308996	-	Rmet_0051	-	rod shape-determining protein MreB
52	 68.25	+1	59673..60683	+	336	94308997	-	Rmet_0052	-	rod shape-determining protein MreC
53	 64.13	0	60680..61192	+	170	94308998	-	Rmet_0053	-	rod shape-determining protein MreD
54	 66.54	0	61236..63617	+	793	94308999	-	Rmet_0054	-	peptidoglycan glycosyltransferase
55	 61.33	0	63631..64773	+	380	94309000	-	Rmet_0055	-	rod shape-determining protein RodA
56	 68.01	+1	64826..65497	+	223	94309001	-	Rmet_0056	-	hypothetical protein
57	 67.21	0	65517..66626	+	369	94309002	xerC	Rmet_0057	-	site-specific tyrosine recombinase XerC
58	 66.89	0	66623..67516	-	297	94309003	-	Rmet_0058	-	DNA-binding transcriptional activator GcvA
59	 65.04	0	67773..68141	+	122	94309004	-	Rmet_0059	-	hypothetical protein
60	 67.55	+1	68214..69008	+	264	94309005	lipB	Rmet_0060	-	lipoyltransferase
61	 63.44	0	69085..70077	+	330	94309006	-	Rmet_0061	-	lipoyl synthase
62	 68.36	+1	70418..71068	+	216	94309007	-	Rmet_0062	-	hypothetical protein
63	 70.98	+1	71065..72084	+	339	94309008	-	Rmet_0063	-	allophanate hydrolase subunit 2
64	 66.40	0	72161..72901	+	246	94309009	-	Rmet_0064	-	hypothetical protein
65	 64.22	0	72969..73703	+	244	94309010	-	Rmet_0065	-	hypothetical protein
66	 62.67	0	73707..74657	+	316	94309011	-	Rmet_0066	-	hypothetical protein
67	 67.41	0	74671..75339	+	222	94309012	-	Rmet_0067	-	pyrrolidone-carboxylate peptidase
68	 67.80	+1	75351..76673	-	440	94309013	-	Rmet_0068	-	VanZ like protein
69	 69.14	+1	76725..77372	-	215	94309014	-	Rmet_0069	-	putative lipoprotein
70	 63.91	0	77417..78358	-	313	94309015	-	Rmet_0070	-	hypothetical protein
71	 67.26	0	78358..79197	-	279	94309016	-	Rmet_0071	-	ABC transporter-related protein
72	 64.46	0	79194..80324	-	376	94309017	-	Rmet_0072	-	hypothetical protein
73	 70.16	+1	80485..81342	+	285	94309018	-	Rmet_0073	-	biotin--protein ligase
74	 70.14	+1	81339..82172	+	277	94309019	-	Rmet_0074	-	pantothenate kinase
75	 69.81	+1	82215..83009	+	264	94309020	-	Rmet_0075	-	sporulation related
76	 66.67	0	83133..83624	-	163	94309021	-	Rmet_0076	-	bifunctional ADP-heptose synthase
77	 61.79	0	83702..84562	-	286	94309022	-	Rmet_0077	-	hypothetical protein
78	 68.50	+1	84692..85948	-	418	94309023	-	Rmet_0078	-	patatin
79	 65.89	0	85945..86844	-	299	94309024	-	Rmet_0079	-	hypothetical protein
80	 65.94	0	86899..87726	-	275	94309025	-	Rmet_0080	-	enoyl-CoA hydratase
81	 65.61	0	88108..89148	-	346	94309026	-	Rmet_0081	-	fumarylacetoacetate (FAA) hydrolase
82	 67.48	0	89192..90049	+	285	94309027	-	Rmet_0082	-	IclR family transcriptional regulator
83	 67.26	0	90102..91106	+	334	94309028	-	Rmet_0083	-	putative prolin-rich signal peptide protein
84	 63.84	0	91161..92009	+	282	94309029	-	Rmet_0084	-	3-oxoadipate enol-lactonase
85	 53.10	-2	92245..92502	+	85	94309030	-	Rmet_0085	-	hypothetical protein
86	 63.87	0	92621..93013	-	130	94309031	-	Rmet_0086	-	rhodanese-like protein
87	 65.73	0	93237..94304	+	355	94309032	-	Rmet_0087	-	methionine synthase (B12-dependent)
88	 64.41	0	94333..97080	+	915	94309033	-	Rmet_0088	-	methionine synthase (B12-dependent)
89	 66.37	0	97386..97724	+	112	94309034	-	Rmet_0089	-	cell wall surface anchor family protein
90	 60.35	-1	97974..98606	+	210	94309035	-	Rmet_0090	-	two component LuxR family transcriptional regulator
91	 62.01	0	98767..99174	+	135	94309036	-	Rmet_0091	-	response regulator receiver domain-containing protein
92	 65.15	0	99240..100625	-	461	94309037	-	Rmet_0092	-	histidine kinase
93	 58.84	-1	100777..101070	+	97	94309038	-	Rmet_0093	-	hypothetical protein
94	 68.28	+1	101101..101535	+	144	94309039	-	Rmet_0094	-	protein of unknown function DUF883, ElaB
95	 61.68	0	101947..102267	-	106	94309040	-	Rmet_0095	-	hypothetical protein
96	 68.27	+1	102445..104253	+	602	94309041	argS	Rmet_0096	-	arginyl-tRNA synthetase
97	 67.61	+1	104393..105133	+	246	94309042	-	Rmet_0097	-	sporulation related
98	 62.75	0	105279..105917	+	212	94309043	-	Rmet_0098	-	DSBA oxidoreductase
99	 67.42	0	106009..106806	+	265	94309044	-	Rmet_0099	-	short chain dehydrogenase
100	 65.84	0	106806..107648	+	280	94309045	-	Rmet_0100	-	hypothetical protein
63.96	MEAN

3.54	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.