IslandPath Analysis: Thermoplasma acidophilum DSM 1728



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 46.71   STD DEV: 4.01
Thermoplasma acidophilum DSM 1728, complete genome - 1..1564906
1482 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 48.39	0	229..786	+	185	16081187	-	Ta0001	-	V-type ATP synthase subunit E
2	 48.18	0	788..1858	+	356	16081188	-	Ta0002	-	V-type ATP synthase subunit C
3	 47.30	0	1859..2173	+	104	16081189	-	Ta0003	-	V-type ATP synthase subunit F
4	 51.29	+1	2183..4477	+	764	16081190	-	Ta0004	-	V-type ATP synthase subunit A
5	 51.01	+1	4410..5840	+	476	16081191	-	Ta0005	-	V-type ATP synthase subunit B
6	 46.88	0	5825..6466	+	213	16081192	-	Ta0006	-	V-type ATP synthase subunit D
7	 41.07	-1	6620..6955	+	111	16082633	ntpF	Ta0007a	-	V-type ATP synthase subunit H
8	 47.13	0	6975..8888	+	637	16081193	-	Ta0008	-	V-type ATP synthase subunit I
9	 46.08	0	8957..9568	+	203	16081194	-	Ta0009	-	glutamine amidotransferase subunit PdxT
10	 43.15	0	9573..10652	+	359	16082469	gcvT	Ta0010m	-	aminomethyltransferase (glycine cleavage system T protein)
11	 46.43	0	10713..11651	-	312	16081195	-	Ta0011	-	UDP-glucose 4-epimerase related protein
12	 41.90	-1	11812..12021	+	69	16081196	-	Ta0012	-	hypothetical protein
13	 45.95	0	12098..12715	+	205	16081197	-	Ta0013	-	Fe-superoxide dismutase (sod)
14	 42.11	-1	12723..13337	+	204	16082470	ogg	Ta0014m	-	N-glycosylase/DNA lyase
15	 46.03	0	13330..14109	-	259	16081198	-	Ta0015	-	hypothetical protein
16	 42.50	-1	14252..14818	-	188	16081199	-	Ta0016	-	hypothetical protein
17	 48.10	0	15264..16157	-	297	16081200	-	Ta0017	-	hypothetical protein
18	 46.38	0	16157..16723	-	188	16081201	-	Ta0018	-	hypothetical protein
19	 47.66	0	16973..17614	+	213	16081202	-	Ta0019	-	hypothetical protein
20	 43.93	0	17617..18135	+	172	16081203	-	Ta0020	-	hypothetical protein
21	 43.12	0	18173..18448	-	91	16082634	-	Ta0020a	-	hypothetical protein
22	 48.05	0	18613..19611	+	332	16082471	hisC	Ta0021m	-	histidinol-phosphate aminotransferase
23	 49.42	0	19686..20456	+	256	16081204	-	Ta0022	-	hypothetical protein
24	 49.39	0	20453..20944	+	163	16082472	-	Ta0023m	-	hypothetical protein
25	 48.68	0	20946..22379	-	477	16081205	-	Ta0024	-	hypothetical protein
26	 50.44	0	22409..23425	-	338	16081206	-	Ta0025	-	hypothetical protein
27	 50.05	0	23443..24393	-	316	16081207	-	Ta0026	-	threonine synthase
28	 48.89	0	24534..25388	-	284	16081208	-	Ta0027	-	alcohol dehydrogenase related protein
29	 35.57	-2	25735..26091	+	118	16081209	-	Ta0028	-	hypothetical protein
30	 40.40	-1	26048..26896	+	282	16081210	-	Ta0029	-	hypothetical protein
31	 51.11	+1	26945..28120	+	391	16081211	-	Ta0030	-	acetyl-CoA acetyltransferase
32	 49.58	0	28122..28595	+	157	16081212	-	Ta0031	-	hypothetical protein
33	 47.15	0	28596..29051	-	151	16081213	-	Ta0032	-	hypothetical protein
34	 45.17	0	29357..29956	+	199	16081214	-	Ta0033	-	hypothetical protein
35	 49.47	0	29986..30270	-	94	16081215	-	Ta0034	-	hypothetical protein
36	 46.12	0	30356..30871	-	171	16081216	-	Ta0035	-	hypothetical protein
37	 51.75	+1	31002..34259	+	1085	16082473	polC	Ta0036m	-	DNA polymerase II large subunit
38	 50.51	0	34261..35040	+	259	16081217	-	Ta0037	-	GTPase
39	 49.17	0	35175..35780	-	201	16081218	-	Ta0038	-	72K mitochondrial outer membrane protein related protein
40	 45.81	0	35973..36437	-	154	16081219	-	Ta0039	-	hypothetical protein
41	 49.45	0	36444..38819	-	791	16081220	valS	Ta0040	-	valyl-tRNA synthetase
42	 48.38	0	38857..39441	+	194	16081221	-	Ta0041	-	hypothetical protein
43	 48.38	0	39438..40055	-	205	16081222	-	Ta0042	-	hypothetical protein
44	 44.69	0	40052..40324	-	90	16082635	-	Ta0042a	-	hypothetical protein
45	 48.66	0	40926..42563	-	545	16082474	pyrG	Ta0044m	-	CTP synthetase
46	 51.34	+1	42841..44850	+	669	16082475	fdhF	Ta0045m	-	formate dehydrogenase, alpha subunit
47	 45.60	0	44847..45767	+	306	16081223	-	Ta0046	-	anaerobic sulfite reduction protein A related protein
48	 49.66	0	45805..46539	+	244	16081224	-	Ta0047	-	anaerobic sulfite reduction protein B related protein
49	 49.55	0	46709..48139	+	476	16081225	-	Ta0048	-	phosphate permease related protein
50	 37.63	-2	48715..49413	-	232	16081226	-	Ta0049	-	hypothetical protein
51	 47.24	0	49626..50078	+	150	16081227	-	Ta0050	-	30S ribosomal protein S19e
52	 43.12	0	49986..50312	-	108	16081228	-	Ta0051	-	hypothetical protein
53	 48.00	0	50229..50603	+	124	16081229	-	Ta0052	-	hypothetical protein
54	 50.00	0	50600..50755	+	51	16081230	rpl39e	Ta0053	-	50S ribosomal protein L39e
55	 41.58	-1	50757..51035	+	92	16081231	-	Ta0054	-	50S ribosomal protein L31e
56	 47.77	0	51082..51732	+	216	16082476	TIF6	Ta0055m	-	translation initiation factor IF-6
57	 47.67	0	51758..52273	-	171	16081232	pyrE	Ta0056	-	orotate phosphoribosyltransferase
58	 48.20	0	52384..54246	+	620	16082477	RAD3	Ta0057m	-	Rad3-related DNA helicase
59	 48.82	0	54290..54754	+	154	16081233	-	Ta0058	-	N-terminal acetyltransferase complex ard1 subunit related protein
60	 50.12	0	54976..56178	-	400	16081234	-	Ta0059	-	S-adenosylmethionine synthetase
61	 51.36	+1	56313..57788	+	491	16081235	purH	Ta0060	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
62	 47.22	0	57809..58564	-	251	16081236	-	Ta0061	-	3-hydroxybutyryl-COA dehydratase
63	 45.12	0	58883..59722	-	279	16081237	-	Ta0062	-	hypothetical protein
64	 46.95	0	59733..62045	-	770	16081238	-	Ta0063	-	DNA topoisomerase I
65	 44.32	0	62052..62324	-	90	16082478	acyP	Ta0064m	-	acylphosphatase
66	 43.76	0	62457..63962	-	501	16082479	-	Ta0065m	-	permease
67	 45.21	0	64078..64860	-	260	16081239	-	Ta0066	-	gliding motility protein (gldA) related protein
68	 45.26	0	65043..66023	-	326	16081240	-	Ta0067	-	hypothetical protein
69	 49.48	0	66184..67533	+	449	16081241	-	Ta0068	-	4-aminobutyrate aminotransferase
70	 42.12	-1	67536..68138	-	200	16081242	-	Ta0069	-	hypothetical protein
71	 37.27	-2	68540..69022	+	160	16081243	-	Ta0070	-	hypothetical protein
72	 34.30	-2	69024..69230	+	68	16081244	-	Ta0071	-	hypothetical protein
73	 49.65	0	70585..71718	+	377	16081245	-	Ta0072	-	cell division protein FtsZ
74	 50.00	0	71767..72414	+	215	16081246	-	Ta0073	-	orotidine 5'-phosphate decarboxylase
75	 45.45	0	72499..73191	+	230	16081247	-	Ta0074	-	protease (pspA) related protein
76	 48.05	0	73220..74626	+	468	16081248	-	Ta0075	-	cobyric acid synthase
77	 44.15	0	74960..75874	+	304	16081249	cobD	Ta0076	-	cobalamin biosynthesis protein
78	 46.01	0	75950..77251	+	433	16081250	-	Ta0077	-	ethanolamine permease related protein
79	 51.27	+1	77248..78273	+	341	16081251	-	Ta0078	-	hypothetical protein
80	 47.89	0	78316..79359	-	347	16081252	-	Ta0079	-	dihydropteroate synthase related protein
81	 48.23	0	79463..80617	-	384	16081253	-	Ta0080	-	cystathionine gamma-lyase
82	 43.99	0	80728..81309	+	193	16081254	tdk	Ta0081	-	thymidylate kinase
83	 46.41	0	81342..81953	+	203	16081255	-	Ta0082	-	phosphoribosylglycinamide formyltransferase
84	 46.67	0	82159..82368	-	69	16081256	-	Ta0083	-	hypothetical protein
85	 42.68	-1	82426..83142	-	238	16081257	-	Ta0084	-	hypothetical protein
86	 46.87	0	83173..84369	-	398	16082480	dgoA-2	Ta0085m	-	galactonate dehydratase
87	 46.79	0	84693..85316	-	207	16081258	-	Ta0086	-	hypothetical protein
88	 45.33	0	85509..86333	+	274	16081259	-	Ta0087	-	hypothetical protein
89	 45.77	0	86337..87258	+	307	16082481	-	Ta0088m	-	ABC-type multidrug transport system, ATPase component
90	 45.72	0	87252..88268	-	338	16081260	-	Ta0090	-	phosphoribosylaminoimidazole synthetase
91	 44.99	0	88440..88868	+	142	16081261	rps12P	Ta0091	-	30S ribosomal protein S12P
92	 45.41	0	88875..89429	+	184	16081262	-	Ta0092	-	30S ribosomal protein S7P
93	 47.99	0	89546..89818	-	90	16081263	-	Ta0093	-	DNA-binding protein HTa
94	 46.03	0	90163..90666	+	167	16081264	-	Ta0094	-	hypothetical protein
95	 40.55	-1	90663..90953	-	96	16081265	-	Ta0095	-	hypothetical protein
96	 45.03	0	90954..91979	-	341	16081266	-	Ta0096	-	hypothetical protein
97	 47.59	0	92193..93497	+	434	16082482	dnaG	Ta0097m	-	DNA primase
98	 50.27	0	93479..94960	+	493	16081267	-	Ta0098	-	hypothetical protein
99	 50.04	0	95054..96334	+	426	16081268	hisS	Ta0099	-	histidyl-tRNA synthetase
100	 45.31	0	96385..96576	+	63	16081269	-	Ta0100	-	hypothetical protein
46.71	MEAN

4.01	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.