IslandPath Analysis: Haemophilus influenzae Rd KW20



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 38.46   STD DEV: 3.50
Haemophilus influenzae Rd KW20, complete genome - 1..1830138
1657 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 40.78	0	2..1021	+	339	16271977	gapdH	HI0001	-	glyceraldehyde-3-phosphate dehydrogenase
2	 37.28	0	1190..3013	+	607	16271978	-	HI0002	-	long chain fatty acid CoA ligase
3	 36.63	0	3050..3838	-	262	16271979	-	HI0003	-	haloacid dehalogenase-like protein
4	 43.23	+1	3854..4318	-	154	16271980	-	HI0004	-	putative metalloprotease
5	 36.41	0	4579..5391	-	270	16271981	fdhD	HI0005	-	formate dehydrogenase accessory protein
6	 41.43	0	8750..9688	+	312	16271982	fdxH	HI0007	-	formate dehydrogenase beta subunit
7	 38.49	0	9681..10397	+	238	16271983	fdxI	HI0008	-	formate dehydrogenase gamma subunit
8	 36.63	0	10467..11375	+	302	16271984	fdhE	HI0009	-	formate dehydrogenase accessory protein FdhE
9	 35.15	0	11414..11854	-	146	16271985	rimI	HI0010	-	ribosomal-protein-alanine N-acetyltransferase
10	 40.99	0	11857..12261	-	134	16271986	holD	HI0011	-	DNA polymerase III subunit psi
11	 36.56	0	12367..13359	+	330	16271987	rsmC	HI0012	-	16S ribosomal RNA m2G1207 methyltransferase
12	 38.61	0	13423..14331	-	302	16271988	era	HI0013	-	GTP-binding protein Era
13	 41.67	0	14328..15011	-	227	16271989	rnc	HI0014	-	ribonuclease III
14	 38.95	0	15013..16062	-	349	16271990	lepB	HI0015	-	signal peptidase I
15	 39.96	0	16071..17867	-	598	16271991	lepA	HI0016	-	GTP-binding protein LepA
16	 38.54	0	18035..18418	-	127	16271992	-	HI0017	-	autonomous glycyl radical cofactor GrcA
17	 40.61	0	18676..19335	+	219	16271993	ung	HI0018	-	uracil-DNA glycosylase
18	 41.47	0	19405..20829	-	474	16271994	-	HI0019	-	hypothetical protein
19	 40.76	0	21248..22687	-	479	16271995	-	HI0020	-	hypothetical protein
20	 37.65	0	22689..23939	-	416	16271996	citG	HI0021	-	CitG protein
21	 41.25	0	24267..25769	-	500	16271997	citF	HI0022	-	citrate lyase alpha chain
22	 42.42	+1	25784..26641	-	285	30995348	citE	HI0023	-	citrate lyase beta chain
23	 42.36	+1	26656..26943	-	95	16271999	citD	HI0024	-	citrate lyase subunit gamma
24	 35.02	0	26981..27988	-	335	16272000	citC	HI0025	-	citrate lyase ligase
25	 39.98	0	28239..29201	-	320	16272001	lipA	HI0026	-	lipoyl synthase
26	 37.40	0	29255..29893	-	212	16272002	lipB	HI0027	-	lipoyltransferase
27	 32.26	-1	29895..30173	-	92	16272003	-	HI0028	-	hypothetical protein
28	 35.36	0	30229..31410	-	393	16272004	dacA	HI0029	-	penicillin-binding protein 5
29	 34.61	-1	31426..32289	-	287	16272005	-	HI0030	-	lipoprotein
30	 38.62	0	32341..33456	-	371	16272006	rodA	HI0031	-	rod shape-determining protein
31	 38.55	0	33446..35401	-	651	16272007	pbp2	HI0032	-	penicillin-binding protein 2
32	 45.73	+2	35422..35889	-	155	16272008	-	HI0033	-	SPOUT methyltransferase superfamily protein
33	 38.83	0	35943..36251	-	102	16272009	-	HI0034	-	hypothetical protein
34	 41.67	0	36376..38031	-	551	16272010	-	HI0035	-	hypothetical protein
35	 37.32	0	38237..40015	+	592	16272011	-	HI0036	-	ABC transporter ATP-binding protein
36	 41.10	0	40145..41200	+	351	30995349	mreB	HI0037	-	rod shape-determining protein MreB
37	 37.50	0	41280..42335	+	351	16272013	mreC	HI0038	-	rod shape-determining protein
38	 34.97	0	42335..42823	+	162	16272014	mreD	HI0039	-	rod shape-determining protein MreD
39	 31.79	-1	42874..43650	-	258	16272015	-	HI0040	-	hypothetical protein
40	 37.94	0	43660..44463	-	267	16272016	xthA	HI0041	-	exonuclease III
41	 35.26	0	44511..45185	-	224	16272017	-	HI0042	-	pseudouridine synthase-like protein
42	 35.68	0	45185..46249	-	354	16272018	-	HI0043	-	hypothetical protein
43	 36.05	0	46309..46971	-	220	16272019	-	HI0044	-	hypothetical protein
44	 36.22	0	47298..47852	-	184	16272020	-	HI0045	-	hypothetical protein
45	 33.03	-1	47955..48281	+	108	30995350	phnA	HI0046	-	alkylphosphonate uptake protein
46	 38.18	0	48334..48972	-	212	16272022	eda	HI0047	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
47	 34.38	-1	48991..49848	-	285	16272023	-	HI0048	-	D-mannonate oxidoreductase
48	 35.34	0	49848..50792	-	314	16272024	kdgK	HI0049	-	2-dehydro-3-deoxygluconokinase
49	 34.29	-1	50812..52068	-	418	16273630	-	HI0050m	-	integral membrane protein transporter
50	 31.33	-2	52092..52589	-	165	16272025	-	HI0051	-	hypothetical protein
51	 28.88	-2	52628..53614	-	328	16272026	-	HI0052	-	hypothetical protein
52	 34.60	-1	53641..54669	-	342	16272027	-	HI0053	-	zinc-type alcohol dehydrogenase
53	 31.33	-2	54830..55579	+	249	30995351	uxuR	HI0054	-	uxu operon regulator
54	 37.97	0	55607..56791	+	394	16272029	uxuA	HI0055	-	mannonate dehydratase
55	 37.68	0	56844..57557	-	237	16272030	-	HI0056	-	hypothetical protein
56	 39.07	0	57655..59484	-	609	16272031	uvrC	HI0057	-	excinuclease ABC subunit C
57	 40.52	0	59486..60250	-	254	16272032	kdsB	HI0058	-	3-deoxy-manno-octulosonate cytidylyltransferase
58	 39.74	0	60321..61319	-	332	16272033	lpxK	HI0059	-	tetraacyldisaccharide 4'-kinase
59	 37.64	0	61392..63155	-	587	16272034	msbA	HI0060	-	lipid transporter ATP-binding/permease protein
60	 38.23	0	63196..65562	-	788	16272035	rec2	HI0061	-	recombination protein
61	 40.41	0	65821..66258	+	145	16272036	dksA	HI0062	-	dnaK suppressor protein
62	 41.35	0	66506..67864	+	452	16272037	pcnB	HI0063	-	polyA polymerase
63	 39.13	0	67873..68355	+	160	16272038	folK	HI0064	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
64	 34.17	-1	68431..68907	+	158	16272039	yjeE	HI0065	-	hypothetical protein
65	 32.56	-1	68915..70213	+	432	16272040	-	HI0066	-	N-acetylmuramoyl-L-alanine amidase
66	 39.52	0	70214..72103	+	629	16272041	mutL	HI0067	-	DNA mismatch repair protein
67	 43.06	+1	72111..73046	+	311	16272042	miaA	HI0068	-	tRNA delta(2)-isopentenylpyrophosphate transferase
68	 38.02	0	73052..75997	+	981	16272043	glnE	HI0069	-	glutamate-ammonia-ligase adenylyltransferase
69	 37.69	0	76082..77758	-	558	16272044	recN	HI0070	-	DNA repair protein
70	 38.17	0	77902..78687	-	261	16272045	ppnK	HI0072	-	inorganic polyphosphate/ATP-NAD kinase
71	 38.96	0	78763..79455	+	230	30995352	grpE	HI0071	-	heat shock protein
72	 37.39	0	79468..79812	-	114	16272047	-	HI0073	-	nucleotidyltransferase
73	 32.43	-1	79805..80245	-	146	16272048	-	HI0074	-	nucleotidyltransferase
74	 41.71	0	80526..82649	+	707	16272049	nrdD	HI0075	-	anaerobic ribonucleoside triphosphate reductase
75	 38.91	0	82767..83627	+	286	16272050	tesB	HI0076	-	acyl-CoA thioesterase II
76	 40.14	0	83638..84504	+	288	16272051	-	HI0077	-	hypothetical protein
77	 40.29	0	84580..85959	-	459	16272052	cysS	HI0078	-	cysteinyl-tRNA synthetase
78	 37.25	0	86062..86571	+	169	16272053	ppiB	HI0079	-	peptidyl-prolyl cis-trans isomerase B
79	 31.94	-1	86575..87006	+	143	16272054	-	HI0080	-	hypothetical protein
80	 38.78	0	87148..87936	+	262	16272055	-	HI0081	-	hypothetical protein
81	 38.58	0	88193..88459	+	88	16272056	-	HI0082	-	hypothetical protein
82	 38.43	0	88474..88689	+	71	16272057	-	HI0083	-	hypothetical protein
83	 35.80	0	88739..89062	-	107	16272058	trxM	HI0084	-	thioredoxin
84	 39.16	0	89182..90177	-	331	16272059	ldhA	HI0085	-	D-lactate dehydrogenase
85	 38.31	0	90190..91335	-	381	16272060	metB	HI0086	-	cystathionine gamma-synthase
86	 39.67	0	92148..93425	-	425	16272061	thrC	HI0087	-	threonine synthase
87	 38.62	0	93468..94412	-	314	16272062	thrB	HI0088	-	homoserine kinase
88	 40.52	0	94425..96872	-	815	16272063	thrA	HI0089	-	bifunctional aspartokinase I/homeserine dehydrogenase I
89	 38.38	0	97196..97909	+	237	16272064	-	HI0090	-	hypothetical protein
90	 44.50	+1	97949..99085	-	378	16272065	-	HI0091	-	hypothetical protein
91	 43.41	+1	99094..100353	-	419	16272066	-	HI0092	-	hypothetical protein
92	 37.49	0	100475..101581	-	368	16272067	-	HI0093	-	hypothetical protein
93	 36.76	0	101783..102103	-	106	30995353	-	HI0094	-	hypothetical protein
94	 37.83	0	102453..103208	-	251	16272069	-	HI0095	-	hypothetical protein
95	 30.56	-2	103542..104117	+	191	16272070	-	HI0096	-	hypothetical protein
96	 39.68	0	104277..105274	+	332	30995354	hitA	HI0097	-	iron-utilization periplasmic protein hFbpA
97	 39.18	0	105476..106912	+	478	30995355	hitB	HI0098	-	iron(III) ABC transporter permease protein
98	 38.26	0	106914..107969	+	351	16272073	hitC	HI0099	-	iron(III) ABC transporter ATP-binding protein
99	 41.09	0	108685..109818	-	377	16272076	dapE	HI0102	-	succinyl-diaminopimelate desuccinylase
100	 36.81	0	109846..110190	-	114	16272077	-	HI0103	-	hypothetical protein
38.46	MEAN

3.50	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.