IslandPath Analysis: Shewanella putrefaciens CN-32



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 44.78   STD DEV: 3.68
Shewanella putrefaciens CN-32, complete genome - 1..4659220
3972 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 43.36	0	147..1532	+	461	146291112	dnaA	Sputcn32_0001	-	chromosomal replication initiation protein
2	 42.69	0	1553..2653	+	366	146291113	-	Sputcn32_0002	-	DNA polymerase III, beta subunit
3	 44.04	0	2850..3932	+	360	146291114	-	Sputcn32_0003	-	DNA replication and repair protein RecF
4	 45.99	0	3949..6366	+	805	146291115	-	Sputcn32_0004	-	DNA gyrase, B subunit
5	 42.98	0	6568..7614	+	348	146291116	-	Sputcn32_0005	-	putative signal transduction protein
6	 47.29	0	7702..9771	-	689	146291117	glyS	Sputcn32_0006	-	glycyl-tRNA synthetase subunit beta
7	 49.67	+1	9782..10687	-	301	146291118	glyQ	Sputcn32_0007	-	glycyl-tRNA synthetase subunit alpha
8	 44.89	0	10805..11401	+	198	146291119	-	Sputcn32_0008	-	DNA-3-methyladenine glycosylase I
9	 47.01	0	11525..14713	-	1062	146291120	-	Sputcn32_0009	-	amidohydrolase
10	 45.47	0	14935..15387	-	150	146291121	-	Sputcn32_0010	-	hypothetical protein
11	 46.34	0	15432..15677	-	81	146291122	-	Sputcn32_0011	-	SirA family protein
12	 49.83	+1	15908..17071	-	387	146291123	fadA	Sputcn32_0012	-	3-ketoacyl-CoA thiolase
13	 47.70	0	17094..19244	-	716	146291124	fadB	Sputcn32_0013	-	multifunctional fatty acid oxidation complex subunit alpha
14	 47.47	0	19735..21057	+	440	146291125	-	Sputcn32_0014	-	proline dipeptidase
15	 43.74	0	21085..21699	+	204	146291126	-	Sputcn32_0015	-	hypothetical protein
16	 43.83	0	21777..23234	+	485	146291127	-	Sputcn32_0016	-	TrkH family potassium uptake protein
17	 40.19	-1	23237..23761	+	174	146291128	-	Sputcn32_0017	-	protoporphyrinogen oxidase
18	 40.78	-1	23811..24119	-	102	146291129	-	Sputcn32_0018	-	regulatory protein, ArsR
19	 41.98	0	24322..24876	+	184	146291130	-	Sputcn32_0019	-	protoporphyrinogen oxidase
20	 43.31	0	24916..26358	-	480	146291131	-	Sputcn32_0020	-	TrkH family potassium uptake protein
21	 46.17	0	26379..27788	-	469	146291132	trkA	Sputcn32_0021	-	potassium transporter peripheral membrane component
22	 49.07	+1	27804..29093	-	429	146291133	-	Sputcn32_0022	-	sun protein
23	 48.59	+1	29096..30052	-	318	146291134	-	Sputcn32_0023	-	methionyl-tRNA formyltransferase
24	 40.35	-1	30062..30574	-	170	146291135	-	Sputcn32_0024	-	peptide deformylase
25	 41.87	0	30700..31824	+	374	146291136	-	Sputcn32_0025	-	peptidoglycan-binding LysM
26	 45.36	0	31903..32925	+	340	146291137	-	Sputcn32_0026	-	DNA protecting protein DprA
27	 39.87	-1	32928..33401	+	157	146291138	-	Sputcn32_0027	-	hypothetical protein
28	 44.21	0	33515..34084	+	189	146291139	-	Sputcn32_0028	-	DNA topoisomerase type IA Zn finger domain-containing protein
29	 47.44	0	34232..34798	+	188	146291140	-	Sputcn32_0029	-	Sua5/YciO/YrdC/YwlC family protein
30	 50.61	+1	34824..35732	+	302	146291141	-	Sputcn32_0030	-	coproporphyrinogen III oxidase
31	 46.12	0	35767..36204	-	145	146291142	-	Sputcn32_0031	-	globin
32	 49.71	+1	36358..37206	+	282	146291143	-	Sputcn32_0032	-	shikimate 5-dehydrogenase
33	 47.10	0	37212..37487	+	91	146291144	-	Sputcn32_0033	-	hypothetical protein
34	 46.08	0	37621..38169	-	182	146291145	-	Sputcn32_0034	-	carbonic anhydrase
35	 43.92	0	44241..44495	+	84	146291146	-	Sputcn32_0035	-	hypothetical protein
36	 41.23	0	44518..44973	+	151	146291147	-	Sputcn32_0036	-	BadM/Rrf2 family transcriptional regulator
37	 40.59	-1	44959..45702	-	247	146291148	-	Sputcn32_0037	-	protein of unknown function DUF610, YibQ
38	 40.94	-1	45712..46920	-	402	146291149	-	Sputcn32_0038	-	carboxyl-terminal protease
39	 44.09	0	46950..48083	-	377	146291150	-	Sputcn32_0039	-	peptidase M23B
40	 48.22	0	48094..49638	-	514	146291151	-	Sputcn32_0040	-	phosphoglyceromutase
41	 38.85	-1	49905..50339	+	144	146291152	-	Sputcn32_0041	-	rhodanese domain-containing protein
42	 45.27	0	50598..51083	+	161	146291153	-	Sputcn32_0042	-	preprotein translocase subunit SecB
43	 49.36	+1	51088..52104	+	338	146291154	gpsA	Sputcn32_0043	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
44	 49.62	+1	52525..53709	+	394	146291155	-	Sputcn32_0044	-	hypothetical protein
45	 35.70	-2	53783..54247	-	154	146291156	-	Sputcn32_0045	-	hypothetical protein
46	 47.03	0	54548..55912	-	454	146291157	-	Sputcn32_0046	-	TrkH family potassium uptake protein
47	 45.21	0	55914..56612	-	232	146291158	-	Sputcn32_0047	-	TrkA domain-containing protein
48	 43.77	0	56655..57344	-	229	146291159	-	Sputcn32_0048	-	two component transcriptional regulator
49	 43.46	0	57345..58391	-	348	146291160	-	Sputcn32_0049	-	integral membrane sensor signal transduction histidine kinase
50	 50.97	+1	58629..59552	-	307	146291161	-	Sputcn32_0050	-	pirin domain-containing protein
51	 45.68	0	59840..61030	+	396	146291162	-	Sputcn32_0051	-	putative plasmid transfer protein
52	 45.16	0	61217..61681	+	154	146291163	-	Sputcn32_0052	-	NLP/P60 protein
53	 50.19	+1	61972..62505	+	177	146291164	mogA	Sputcn32_0053	-	molybdenum cofactor biosynthesis protein
54	 38.96	-1	62578..62826	-	82	146291165	-	Sputcn32_0054	-	hypothetical protein
55	 46.32	0	62906..64045	-	379	146291166	-	Sputcn32_0055	-	transport protein, putative
56	 47.89	0	64128..64862	-	244	146291167	-	Sputcn32_0056	-	ABC transporter related
57	 47.29	0	64866..66506	-	546	146291168	-	Sputcn32_0057	-	TAP domain-containing protein
58	 49.19	+1	66600..66971	+	123	146291169	-	Sputcn32_0058	-	regulatory protein GntR, HTH
59	 48.15	0	67014..67877	+	287	146291170	-	Sputcn32_0059	-	ABC transporter related
60	 44.65	0	67874..69190	+	438	146291171	-	Sputcn32_0060	-	hypothetical protein
61	 46.36	0	69383..71179	+	598	146291172	-	Sputcn32_0061	-	AMP-dependent synthetase and ligase
62	 45.30	0	71323..73779	+	818	146291173	-	Sputcn32_0062	-	MORN repeat-containing protein
63	 46.47	0	73905..74315	+	136	146291174	-	Sputcn32_0063	-	thioesterase superfamily protein
64	 50.64	+1	74439..74987	+	182	146291175	-	Sputcn32_0064	-	HPP family protein+B94
65	 45.69	0	74984..75250	-	88	146291176	-	Sputcn32_0065	-	hypothetical protein
66	 44.22	0	75320..75760	-	146	146291177	-	Sputcn32_0066	-	thioesterase superfamily protein
67	 46.21	0	75872..76267	+	131	146291178	-	Sputcn32_0067	-	glutathione-dependent formaldehyde-activating, GFA
68	 45.16	0	76603..77727	+	374	146291179	-	Sputcn32_0068	-	hypothetical protein
69	 44.35	0	77797..78477	-	226	146291180	-	Sputcn32_0069	-	2,3-diketo-5-methylthio-1-phosphopentane phosphatase
70	 41.03	-1	78858..79286	+	142	146291181	-	Sputcn32_0070	-	hypothetical protein
71	 47.09	0	79288..81111	-	607	146291182	-	Sputcn32_0071	-	glycerophosphoryl diester phosphodiesterase
72	 37.97	-1	81271..81615	+	114	146291183	-	Sputcn32_0072	-	hypothetical protein
73	 44.88	0	81838..82374	+	178	146291184	-	Sputcn32_0073	-	hypothetical protein
74	 36.41	-2	82489..82845	+	118	146291185	-	Sputcn32_0074	-	hypothetical protein
75	 45.14	0	83012..83443	+	143	146291186	-	Sputcn32_0075	-	MarR family transcriptional regulator
76	 47.49	0	83522..84277	+	251	146291187	-	Sputcn32_0076	-	siderophore-interacting protein
77	 50.69	+1	84375..85601	-	408	146291188	-	Sputcn32_0077	-	imidazolonepropionase
78	 51.55	+1	85836..86543	+	235	146291189	-	Sputcn32_0078	-	histidine utilization repressor
79	 54.26	+2	86685..88352	+	555	146291190	-	Sputcn32_0079	-	urocanate hydratase
80	 51.62	+1	88405..89946	+	513	146291191	-	Sputcn32_0080	-	histidine ammonia-lyase
81	 47.28	0	90072..91319	-	415	146291192	-	Sputcn32_0081	-	gamma-glutamyl phosphate reductase
82	 45.78	0	91337..92437	-	366	146291193	-	Sputcn32_0082	-	gamma-glutamyl kinase
83	 45.29	0	92446..93942	-	498	146291194	-	Sputcn32_0083	-	sodium/proline symporter
84	 47.64	0	94554..95909	-	451	146291195	-	Sputcn32_0084	-	glutathione reductase
85	 43.60	0	96040..96594	-	184	146291196	-	Sputcn32_0085	-	hypothetical protein
86	 41.77	0	96810..97508	-	232	146291197	-	Sputcn32_0086	-	hypothetical protein
87	 47.45	0	97818..99857	+	679	146291198	-	Sputcn32_0087	-	oligopeptidase A
88	 44.63	0	100033..100563	+	176	146291199	-	Sputcn32_0088	-	hypothetical protein
89	 40.59	-1	100589..101236	-	215	146291200	-	Sputcn32_0089	-	glutathione S-transferase domain-containing protein
90	 48.43	0	102007..103152	+	381	146291201	-	Sputcn32_0090	-	RND family efflux transporter MFP subunit
91	 47.56	0	103162..106296	+	1044	146291202	-	Sputcn32_0091	-	hydrophobe/amphiphile efflux-1 (HAE1) family protein
92	 46.18	0	106425..106712	+	95	146291203	-	Sputcn32_0092	-	hypothetical protein
93	 45.17	0	106745..107065	+	106	146291204	-	Sputcn32_0093	-	hypothetical protein
94	 48.57	+1	107146..108681	-	511	146291205	-	Sputcn32_0094	-	AbgT putative transporter
95	 39.72	-1	109245..109808	+	187	146291206	-	Sputcn32_0095	-	LemA family protein
96	 42.93	0	109915..110664	+	249	146291207	-	Sputcn32_0096	-	lytic transglycosylase, catalytic
97	 48.48	+1	110661..110825	-	54	146291208	-	Sputcn32_0097	-	hypothetical protein
98	 46.81	0	110989..111834	-	281	146291209	-	Sputcn32_0098	-	hypothetical protein
99	 41.02	-1	111971..114235	-	754	146291210	-	Sputcn32_0099	-	diguanylate cyclase/phosphodiesterase
100	 47.69	0	114456..115235	+	259	146291211	-	Sputcn32_0100	-	hypothetical protein
44.78	MEAN

3.68	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.