IslandPathversion 1.0

IslandPath Analysis: Shigella flexneri 2a str. 301



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.36 STD DEV: 4.22
Shigella flexneri 2a str. 301, complete genome - 1..4607203
4177 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 51.52	0	190..255	+	21	24111451	thrL	SF0001	-	thr operon leader peptide
2	 53.31	0	336..2798	+	820	56479580	thrA	SF0002	-	bifunctional aspartokinase I/homeserine dehydrogenase I
3	 56.27	+1	2800..3732	+	310	24111453	thrB	SF0003	-	homoserine kinase
4	 52.99	0	3733..5019	+	428	24111454	thrC	SF0004	-	threonine synthase
5	 54.86	0	5242..5529	+	95	56479581	-	SF0005	-	hypothetical protein
6	 49.55	0	5682..6458	-	258	24111456	yaaA	SF0006	-	hypothetical protein
7	 50.18	0	8074..8358	+	94	24111457	-	SF0008	-	hypothetical protein
8	 51.78	0	8237..9190	+	317	56479582	talB	SF0009	-	transaldolase B
9	 54.08	0	9305..9892	+	195	56479583	mogA	SF0010	-	molybdenum cofactor biosynthesis protein
10	 53.26	0	9927..10493	-	188	24111460	yaaH	SF0011	-	hypothetical protein
11	 50.56	0	10642..11355	-	237	24111461	-	SF0012	-	hypothetical protein
12	 48.40	0	11381..11785	-	134	24111462	yaaI	SF0013	-	hypothetical protein
13	 51.17	0	12162..14078	+	638	24111463	dnaK	SF0014	-	molecular chaperone DnaK
14	 55.08	0	14167..15297	+	376	56479584	dnaJ	SF0015	-	chaperone protein DnaJ
15	 51.24	0	16140..17306	+	388	24111465	nhaA	SF0016	-	pH-dependent sodium/proton antiporter
16	 47.44	0	17372..18271	+	299	56479585	nhaR	SF0017	-	transcriptional activator NhaR
17	 52.02	0	18684..19079	-	131	24111467	insB	SF0018	-	IS1 ORF2
18	 52.90	0	19106..19381	-	91	24111468	insA	SF0019	-	IS1 ORF1
19	 46.97	-1	19770..20033	-	87	161485775	rpsT	SF0020	-	30S ribosomal protein S20
20	 52.97	0	20362..21303	+	313	24111470	ribF	SF0021	-	bifunctional riboflavin kinase/FMN adenylyltransferase
21	 55.70	+1	21346..24162	+	938	24111471	ileS	SF0022	-	isoleucyl-tRNA synthetase
22	 53.74	0	24162..24656	+	164	24111472	lspA	SF0023	-	lipoprotein signal peptidase
23	 54.89	0	24749..25198	-	149	24111473	slpA	SF0024	-	FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)
24	 54.89	0	25256..25705	+	149	24111474	slpA	SF0025	-	FKBX-type 16kD peptidyl-prolyl cis-trans isomerase (a rotamase)
25	 55.10	0	25707..26657	+	316	56479587	ispH	SF0026	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
26	 55.74	+1	26723..27637	+	304	24111476	yaaF	SF0027	-	ribonucleoside hydrolase RihC
27	 53.04	0	27804..28625	+	273	24111477	dapB	SF0028	-	dihydrodipicolinate reductase
28	 53.44	0	29081..30229	+	382	56479588	carA	SF0029	-	carbamoyl phosphate synthase small subunit
29	 55.71	+1	30247..33468	+	1073	24111479	carB	SF0030	-	carbamoyl phosphate synthase large subunit
30	 45.96	-1	33730..34125	+	131	161485952	caiF	SF0031	-	DNA-binding transcriptional activator CaiF
31	 54.41	0	34211..34822	-	203	24111481	caiE	SF0032	-	carnitine operon protein CaiE
32	 52.46	0	34807..35700	-	297	24111482	caiD	SF0033	-	carnitinyl-CoA dehydratase
33	 50.73	0	35701..37269	-	522	24111483	caiC	SF0034	-	putative crotonobetaine/carnitine-CoA ligase
34	 52.46	0	37328..38545	-	405	24111484	caiB	SF0035	-	crotonobetainyl-CoA:carnitine CoA-transferase
35	 53.89	0	38674..39816	-	380	24111485	caiA	SF0036	-	crotonobetainyl-CoA dehydrogenase
36	 52.21	0	39847..41361	-	504	24111486	caiT	SF0037	-	L-carnitine/gamma-butyrobetaine antiporter
37	 52.66	0	41717..42487	+	256	161485776	fixA	SF0038	-	putative electron transfer flavoprotein FixA
38	 57.07	+1	42502..43293	+	263	24111488	-	SF0039	-	putative electron transfer flavoprotein subunit alpha
39	 55.17	0	43494..44780	+	428	24111489	fixC	SF0040	-	putative oxidoreductase FixC
40	 56.60	+1	44777..45064	+	95	24111490	fixX	SF0041	-	putative ferredoxin
41	 52.26	0	45123..46517	+	464	24111491	yaaU	SF0042	-	putative transport protein
42	 55.37	0	46565..47095	+	176	24111492	yabF	SF0043	-	glutathione-regulated potassium-efflux system ancillary protein KefF
43	 55.29	0	47088..48950	+	620	24111493	kefC	SF0044	-	glutathione-regulated potassium-efflux system protein KefC
44	 52.92	0	49141..49620	+	159	56479590	folA	SF0045	-	dihydrofolate reductase
45	 55.99	+1	49698..50540	-	280	24111495	apaH	SF0046	-	diadenosine tetraphosphatase
46	 51.85	0	50547..50924	-	125	24111496	apaG	SF0047	-	ApaG
47	 53.41	0	50927..51748	-	273	24111497	ksgA	SF0048	-	dimethyladenosine transferase
48	 56.26	+1	51745..52734	-	329	24111498	pdxA	SF0049	-	4-hydroxythreonine-4-phosphate dehydrogenase
49	 53.85	0	52734..54020	-	428	24111499	surA	SF0050	-	peptidyl-prolyl cis-trans isomerase SurA
50	 51.38	0	54073..56427	-	784	24111500	imp	SF0051	-	organic solvent tolerance protein
51	 52.94	0	56682..57497	+	271	56479591	djlA	SF0052	-	DNA-J like membrane chaperone protein
52	 54.88	0	57645..58331	-	228	24111502	yabO	SF0053	-	hypothetical protein
53	 54.90	0	58286..61192	-	968	24111503	hepA	SF0054	-	ATP-dependent helicase HepA
54	 55.19	0	61357..63708	-	783