version 1.0
Vibrio fischeri ES114 chromosome I, complete sequence - 1..2897536 2586 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1 36.78 0 313..747 - 144 59710608 mioC VF_0001 - flavodoxin 2 42.32 0 817..2184 - 455 59710609 trmE VF_0002 - tRNA modification GTPase TrmE 3 40.77 0 2281..3906 - 541 59710610 yidC VF_0003 - putative inner membrane protein translocase component YidC 4 42.37 0 4133..4486 - 117 59710611 rnpA VF_0004 - ribonuclease P 5 45.93 +2 4502..4636 - 44 59710612 rpmH VF_0005 - 50S ribosomal protein L34 6 39.84 0 4822..5559 - 245 59710613 yecC VF_0006 - cystine transport ATP-binding protein 7 39.73 0 5556..6227 - 223 59710614 yecS VF_0007 - cystine transport system permease protein 8 38.91 0 6352..7104 - 250 59710615 fliY VF_0008 - cystine-binding protein 9 40.71 0 7401..8810 + 469 59710616 dnaA VF_0009 - chromosomal replication initiation protein 10 40.51 0 8843..9943 + 366 59710617 dnaN VF_0010 - DNA polymerase III subunit beta 11 40.83 0 9957..11036 + 359 59710618 recF VF_0011 - recombination protein F 12 42.18 0 11054..13471 + 805 59710619 gyrB VF_0012 - DNA gyrase subunit B 13 39.54 0 13895..14329 + 144 59710620 ibpA VF_0013 - heat shock chaperone 14 40.46 0 14539..15786 - 415 59710621 avtA VF_0014 - valine--pyruvate transaminase 15 43.32 +1 16015..16935 + 306 59710622 glyQ VF_0015 - glycyl-tRNA synthetase subunit alpha 16 41.12 0 16938..19004 + 688 59710623 glyS VF_0016 - glycyl-tRNA synthetase subunit beta 17 39.85 0 19150..20790 + 546 59710624 malS VF_0017 - alpha-amylase 18 38.89 0 20925..21176 + 83 59710625 - VF_0018 - NADH dehydrogenase subunit II-related protein 19 38.89 0 21222..21473 - 83 59710626 tusA VF_0019 - sulfur transfer protein TusA 20 34.38 -1 21659..21850 + 63 59710627 - VF_0020 - hypothetical protein 21 38.64 0 21997..22938 + 313 59710628 - VF_0021 - LysR family transcriptional regulator 22 35.79 -1 23063..23509 + 148 59710629 yiaA VF_0022 - inner membrane protein 23 42.61 +1 23656..24636 - 326 59710630 yhdH VF_0023 - oxidoreductase, Zn-dependent and NAD(P)-binding 24 43.66 +1 25396..26625 - 409 172087631 fadA VF_0024 - 3-ketoacyl-CoA thiolase 25 41.64 0 26573..28750 - 725 59710632 fadB VF_0025 - multifunctional fatty acid oxidation complex subunit alpha 26 40.78 0 28993..29610 + 205 59710633 yigZ VF_0026 - elongation factor 27 40.67 0 29667..31124 + 485 59710634 trkH VF_0027 - potassium transporter 28 37.71 0 31157..31681 + 174 59710635 hemG VF_0028 - protoporphyrinogen oxidase 29 36.93 0 32310..35063 + 917 59710636 pqqL VF_0029 - zinc protease 30 33.33 -1 35144..35338 + 64 59710637 - VF_0030 - hypothetical protein 31 39.20 0 35637..37016 + 459 59710638 - VF_0031 - chloride channel protein 32 42.27 0 37617..39551 + 644 59710639 thiC VF_0032 - thiamine biosynthesis protein ThiC 33 41.06 0 39622..40281 + 219 59710640 thiE VF_0033 - thiamin phosphate synthase (thiamin phosphate pyrophosphorylase) 34 39.93 0 40274..41107 + 277 59710641 thiF VF_0034 - thiamin (thiazole moiety) biosynthesis protein 35 38.03 0 41100..41312 + 70 172087632 thiS VF_2576 - sulfur carrier protein ThiS 36 42.41 +1 41314..42084 + 256 59710642 thiG VF_0035 - thiazole synthase 37 40.05 0 42095..43210 + 371 59710643 thiH VF_0036 - thiamine biosynthesis protein ThiH 38 40.03 0 43328..45775 - 815 59710644 - VF_0037 - beta-N-acetylhexosaminidase 39 41.75 0 46035..47828 - 597 59710645 - VF_0038 - Xaa-Pro aminopeptidase 40 37.27 0 47933..48898 - 321 172087633 yidZ VF_0040 - LysR family transcriptional regulator 41 40.49 0 48996..50225 + 409 59710648 mdtL VF_0041 - multidrug efflux system protein 42 40.89 0 50347..50637 + 96 59710649 - VF_0042 - hypothetical protein 43 38.60 0 50759..51688 - 309 59710650 - VF_0043 - drug/metabolite exporter family protein 44 40.11 0 51789..53309 + 506 172087634 rmuC VF_0044 - recombination limiting protein 45 41.31 0 53367..54131 + 254 59710653 ubiE VF_0046 - ubiquinone/menaquinone biosynthesis methyltransferase 46 37.02 0 54143..54766 + 207 59710654 yigP VF_0047 - hypothetical protein 47 40.06 0 54763..56397 + 544 59710655 ubiB VF_0048 - putative ubiquinone biosynthesis protein UbiB 48 35.34 -1 56449..56697 + 82 59710656 tatA VF_0049 - twin argininte translocase protein A 49 41.99 0 56701..57081 + 126 59710657 tatB VF_0050 - sec-independent translocase 50 39.81 0 57084..57839 + 251 59710658 tatC VF_0051 - TatABCE protein translocation system subunit 51 39.37 0 59230..59991 - 253 59710659 tatD VF_0052 - DNase, TatD family 52 44.54 +1 60143..61159 + 338 59710660 hemB VF_0053 - delta-aminolevulinic acid dehydratase 53 43.04 +1 61453..62946 - 497 59710661 gpp VF_0054 - guanosine pentaphosphate phosphohydrolase 54 43.73 +1 62980..64278 - 432 172087635 rhlB VF_0056 - ATP-dependent RNA helicase 55 41.90 0 64391..64717 + 108 59710664 trxA VF_0057 - thioredoxin 56 42.46 +1 64957..66216 + 419 59710665 rho VF_0058 - transcription termination factor Rho 57 38.96 0 66374..67369 + 331 59710666 - VF_0059 - hypothetical protein 58 42.55 +1 67471..69315 + 614 59710667 ubiD VF_0060 - 3-octaprenyl-4-hydroxybenzoate decarboxylase 59 40.53 0 69479..69742 + 87 59710668 - VF_0061 - phenol hydroxylase P5 protein 60 42.05 0 69839..70549 + 236 59710669 fre VF_0062 - FMN reductase 61 40.68 0 70627..71811 - 394 59710670 hemY VF_0063 - protoheme IX synthesis protein 62 41.18 0 71808..72980 - 390 59710671 hemX VF_0064 - uroporphyrinogen III methylase 63 41.73 0 72977..73738 - 253 59710672 hemD VF_0065 - uroporphyrinogen III synthase 64 44.87 +1 73741..74676 - 311 59710673 hemC VF_0066 - porphobilinogen deaminase 65 39.62 0 75012..77459 + 815 172087636 cyaA VF_0067 - adenylate cyclase 66 42.96 +1 77544..79745 + 733 59710675 uvrD VF_0068 - DNA-dependent helicase II 67 38.44 0 80164..81279 - 371 59710676 rarD VF_0069 - chloramphenical resistance permease 68 41.99 0 81298..83133 + 611 59710677 recQ VF_0070 - ATP-dependent DNA helicase RecQ 69 39.18 0 83137..83427 + 96 59710678 - VF_0071 - hypothetical protein 70 41.10 0 83482..84846 - 454 59710679 glpT VF_0072 - sn-glycerol-3-phosphate transporter 71 39.14 0 85190..85861 + 223 59710680 yhhQ VF_0073 - hypothetical protein 72 40.51 0 86562..89360 + 932 59710681 polA VF_0074 - DNA polymerase I 73 40.28 0 90085..90732 - 215 59710682 yihA VF_0075 - GTPase EngB 74 42.56 +1 91021..91638 + 205 59710683 cycA VF_0076 - cytochrome c4 75 41.28 0 91793..92434 + 213 59710684 - VF_0077 - 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase 76 41.03 0 92434..92979 + 181 59710685 yihI VF_0078 - hypothetical protein 77 38.62 0 92982..93473 + 163 59710686 - VF_0079 - putative coproporphyrinogen III oxidase 78 41.05 0 93582..94955 + 457 59710687 hemN VF_0080 - coproporphyrinogen III oxidase 79 42.86 +1 95145..95606 - 153 59710688 asnC VF_0081 - DNA-binding transcriptional regulator AsnC 80 44.10 +1 95747..96526 + 259 59710689 yhiQ VF_0082 - SAM-dependent methyltransferase 81 38.73 0 96523..96948 - 141 59710690 uspA VF_0083 - universal stress global response regulator 82 39.02 0 97131..97658 + 175 59710691 ftnA VF_0084 - ferritin iron storage protein (cytoplasmic) 83 36.44 0 97739..98092 + 117 59710692 uspB VF_0085 - universal stress protein UspB 84 40.42 0 98141..99325 + 394 59710693 yhiN VF_0086 - oxidoreductase 85 38.50 0 99442..101937 + 831 59710694 - VF_0087 - sensory transduction protein kinase 86 38.83 0 101927..102526 - 199 59710695 - VF_0088 - putative cytoplasmic protein 87 40.75 0 102526..103536 - 336 59710696 - VF_0089 - hypothetical protein 88 43.40 +1 103693..104328 + 211 59710697 eda VF_0090 - multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase 89 37.96 0 104345..106810 - 821 172087637 - VF_0091 - GGDEF domain-containing protein 90 33.85 -1 106809..107000 + 63 172087638 - VF_2580 - hypothetical protein 91 41.02 0 107132..108133 - 333 172087639 add VF_0093 - adenosine deaminase 92 38.69 0 108298..110856 - 852 59710701 - VF_0094 - GGDEF domain-containing protein 93 41.03 0 110973..112376 - 467 59710702 ntrC VF_0095 - fused DNA-binding response regulator in two-component regulatory system with NtrB: nitrogen regulatory response regulator/sigma54 interaction protein 94 40.89 0 112415..113473 - 352 59710703 ntrB VF_0096 - nitrogen regulation protein NR(II) 95 41.15 0 113550..114086 - 178 59710704 - VF_0097 - hypothetical protein 96 43.76 +1 114336..115745 - 469 59710705 glnA VF_0098 - glutamine synthetase 97 43.59 +1 116283..118115 + 610 59710706 typA VF_0099 - GTP-binding protein 98 39.44 0 118412..119344 + 310 59710707 yihY VF_0100 - ribonuclease BN 99 42.76 +1 119316..119750 + 144 59710708 dtd VF_0101 - D-tyrosyl-tRNA deacylase 100 42.00 0 120268..121167 + 299 59710709 yiiD VF_0102 - acetyltransferase 39.21 MEAN 3.17 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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