IslandPath Analysis: Silicibacter pomeroyi DSS-3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 64.59   STD DEV: 3.55
Silicibacter pomeroyi DSS-3, complete genome - 1..4109442
3810 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 59.34	-1	1..1869	+	622	56694929	gidA	SPO0001	-	tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
2	 54.47	-2	1866..2480	+	204	56694930	gidB	SPO0002	-	glucose-inhibited division protein B
3	 57.71	-1	2473..3276	+	267	56694931	parA	SPO0003	-	chromosome partitioning protein ParA
4	 60.94	-1	3299..4189	+	296	56694932	parB	SPO0004	-	chromosome partitioning protein parB
5	 60.45	-1	4179..4532	-	117	56694933	-	SPO0005	-	hypothetical protein
6	 63.04	0	4536..5693	-	385	56694934	-	SPO0006	-	coproporphyrinogen III oxidase
7	 64.23	0	5683..6297	-	204	56694935	-	SPO0007	-	putative deoxyribonucleotide triphosphate pyrophosphatase
8	 64.85	0	6294..7007	-	237	56694936	rph	SPO0008	-	ribonuclease PH
9	 63.00	0	7130..8194	+	354	56694937	hrcA	SPO0009	-	heat-inducible transcription repressor
10	 65.25	0	8205..8768	+	187	56694938	grpE	SPO0010	-	co-chaperone GrpE
11	 65.53	0	8822..11455	-	877	56694939	mutS	SPO0011	-	DNA mismatch repair protein
12	 63.92	0	11598..13853	+	751	56694940	maeB	SPO0012	-	malic enzyme
13	 65.52	0	13857..14729	+	290	56694941	rbsK	SPO0013	-	ribokinase
14	 61.54	0	14726..15388	-	220	56694942	msrA-1	SPO0014	-	methionine-S-sulfoxide reductase
15	 63.18	0	15491..16264	+	257	56694943	-	SPO0015	-	hypothetical protein
16	 58.87	-1	16332..16613	-	93	56694944	-	SPO0016	-	sterol carrier family protein
17	 63.06	0	16689..17132	-	147	56694945	-	SPO0017	-	hypothetical protein
18	 62.76	0	17129..18358	-	409	56694946	argG	SPO0018	-	argininosuccinate synthase
19	 58.36	-1	18450..19280	+	276	56694947	-	SPO0019	-	hypothetical protein
20	 63.00	0	19338..20564	+	408	56694948	ilvA	SPO0020	-	threonine dehydratase
21	 59.04	-1	20571..20924	-	117	56694949	-	SPO0021	-	Hpt domain-containing protein
22	 60.24	-1	21005..22342	+	445	56694950	-	SPO0022	-	response regulator
23	 66.89	0	22329..22781	-	150	56694951	-	SPO0023	-	NUDIX family hydrolase
24	 64.02	0	22858..23838	+	326	56694952	hslO	SPO0024	-	chaperonin, 33 kDa
25	 69.63	+1	23855..24427	+	190	56694953	-	SPO0025	-	NUDIX family hydrolase
26	 68.74	+1	24424..25578	+	384	56694954	-	SPO0026	-	polyA polymerase family protein
27	 63.02	0	25770..27608	+	612	56694955	-	SPO0027	-	ABC transporter, transmembrane ATP-binding protein
28	 61.87	0	27605..29437	+	610	56694956	-	SPO0028	-	ABC transporter, transmembrane ATP-binding protein
29	 69.62	+1	29456..30709	+	417	56694957	rumA	SPO0029	-	23S rRNA (Uracil-5-)-methyltransferase rumA
30	 61.00	-1	30727..31503	+	258	56694958	-	SPO0030	-	voltage-gated sodium channel
31	 58.62	-1	31478..32086	+	202	56694959	-	SPO0031	-	ErfK/YbiS/YcfS/YnhG family protein
32	 60.73	-1	32070..32372	-	100	56694960	-	SPO0032	-	hypothetical protein
33	 66.01	0	32458..33366	+	302	56694961	-	SPO0033	-	LysR family transcriptional regulator
34	 63.61	0	33377..34816	-	479	56694962	-	SPO0034	-	hypothetical protein
35	 62.80	0	34823..36502	-	559	56694963	-	SPO0035	-	core-2/I-branching enzyme family protein
36	 58.46	-1	36520..37542	-	340	56694964	-	SPO0036	-	hypothetical protein
37	 65.24	0	37703..38752	-	349	56694965	-	SPO0037	-	hypothetical protein
38	 66.42	0	38766..39566	-	266	56694966	kdsB	SPO0038	-	3-deoxy-manno-octulosonate cytidylyltransferase
39	 63.53	0	39567..40364	-	265	56694967	cysQ	SPO0039	-	3'(2'),5'-bisphosphate nucleotidase
40	 58.03	-1	40483..41304	+	273	56694968	-	SPO0040	-	ABC transporter, permease protein
41	 66.32	0	41301..41885	+	194	56694969	-	SPO0041	-	hypothetical protein
42	 66.83	0	41882..42478	-	198	56694970	-	SPO0042	-	alkylated DNA repair protein, putative
43	 60.97	-1	42698..44611	+	637	56694971	dnaK	SPO0043	-	chaperone protein DnaK
44	 64.49	0	44687..45832	+	381	56694972	dnaJ	SPO0044	-	chaperone protein DnaJ
45	 65.42	0	46122..46925	+	267	56694973	thiD	SPO0045	-	phosphomethylpyrimidine kinase
46	 64.31	0	46922..47899	+	325	56694974	-	SPO0046	-	thiamine biosynthesis oxidoreductase ThiO, putative
47	 66.15	0	47883..48077	+	64	56698725	thiS	SPO0046.1	-	thiamine biosynthesis protein ThiS
48	 65.36	0	48081..48845	+	254	56694975	thiG	SPO0047	-	thiazole synthase
49	 64.66	0	48842..49438	+	198	56694976	thiE	SPO0048	-	thiamine-phosphate pyrophosphorylase
50	 64.13	0	49417..50400	+	327	56694977	-	SPO0049	-	thiamine biosynthesis protein ThiF
51	 61.96	0	50309..51349	+	346	56694978	-	SPO0050	-	ABC transporter, periplasmic substrate-binding protein
52	 65.27	0	51382..52026	+	214	56694979	-	SPO0051	-	TENA/THI-4 family protein
53	 69.57	+1	51960..52751	+	263	56694980	-	SPO0052	-	ABC transporter, ATP-binding protein
54	 67.05	0	52706..53482	+	258	56694981	-	SPO0053	-	ABC transporter, permease protein
55	 62.22	0	53600..54274	+	224	56694982	radC	SPO0054	-	DNA repair protein RadC
56	 66.41	0	54337..55893	-	518	56694983	-	SPO0055	-	OmpA domain-containing protein
57	 59.17	-1	55908..56147	+	79	56694984	-	SPO0056	-	hypothetical protein
58	 62.20	0	57011..59716	-	901	56694985	secA	SPO0057	-	preprotein translocase subunit SecA
59	 63.54	0	59912..60742	+	276	56694986	-	SPO0058	-	peptidyl-prolyl cis-trans isomerase domain-containing protein
60	 64.79	0	60750..61976	+	408	56694987	argJ	SPO0059	-	bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein
61	 62.66	0	61973..62371	+	132	56694988	mutT	SPO0060	-	mutator mutT protein
62	 65.03	0	62848..65355	-	835	56694989	infB	SPO0061	-	translation initiation factor IF-2
63	 61.70	0	65364..65987	-	207	56694990	-	SPO0062	-	hypothetical protein
64	 63.35	0	66012..67637	-	541	56694991	nusA	SPO0063	-	transcription elongation factor NusA
65	 62.04	0	67637..68263	-	208	56694992	-	SPO0064	-	hypothetical protein
66	 72.02	+2	68420..69241	-	273	56694993	-	SPO0065	-	peptide/opine/nickel uptake ABC transporter periplasmic substrate-binding protein
67	 63.62	0	69238..70188	-	316	56694994	pip	SPO0066	-	proline iminopeptidase
68	 63.45	0	70268..71014	+	248	56694995	ubiG	SPO0067	-	3-demethylubiquinone-9 3-methyltransferase
69	 62.13	0	71105..71545	-	146	56694996	-	SPO0068	-	transcriptional regulator, putative
70	 65.22	0	71558..72388	-	276	56694997	-	SPO0069	-	carbon-nitrogen family hydrolase
71	 62.45	0	72385..72645	-	86	56694998	-	SPO0070	-	glutaredoxin
72	 67.90	0	72738..73466	-	242	56694999	-	SPO0071	-	competence protein F, putative
73	 69.06	+1	73483..74316	+	277	56695000	-	SPO0072	-	hypothetical protein
74	 62.95	0	74429..75424	+	331	56695001	hemH	SPO0073	-	ferrochelatase
75	 61.29	0	75521..75706	-	61	56695002	-	SPO0074	-	hypothetical protein
76	 62.36	0	75848..76474	-	208	56695003	-	SPO0075	-	ErfK/YbiS/YcfS/YnhG family protein
77	 63.39	0	76609..77127	+	172	56695004	-	SPO0076	-	putative lipoprotein
78	 64.30	0	77195..77659	-	154	56695005	ptsN	SPO0077	-	PTS IIA-like nitrogen-regulatory protein PtsN
79	 58.16	-1	77723..78286	-	187	56695006	-	SPO0078	-	ribosomal subunit interface protein, putative
80	 63.11	0	78536..79294	-	252	56695008	-	SPO0079	-	ABC transporter, ATP-binding protein
81	 65.45	0	79294..79785	-	163	56695007	-	SPO0080	-	hypothetical protein
82	 61.90	0	79789..80397	-	202	56695009	-	SPO0081	-	hypothetical protein
83	 66.87	0	80401..81369	-	322	56695011	kdsD	SPO0082	-	arabinose 5-phosphate isomerase
84	 62.93	0	81366..81980	-	204	56695010	-	SPO0083	-	exonuclease, putative
85	 64.47	0	82247..83701	-	484	56695012	betB	SPO0084	-	betaine aldehyde dehydrogenase
86	 64.60	0	83874..84212	+	112	56695013	-	SPO0085	-	hypothetical protein
87	 65.48	0	84326..85588	+	420	56695014	-	SPO0086	-	putative lipoprotein
88	 63.16	0	85616..86671	+	351	56695015	-	SPO0087	-	hypothetical protein
89	 68.61	+1	86668..88158	+	496	56695016	-	SPO0088	-	hypothetical protein
90	 68.78	+1	88160..89155	+	331	56695017	-	SPO0089	-	hypothetical protein
91	 69.73	+1	89159..90235	+	358	56695018	-	SPO0090	-	hypothetical protein
92	 64.35	0	90242..91147	-	301	56695019	-	SPO0091	-	rhodanese-like domain-containing protein
93	 67.40	0	91224..92447	-	407	56695021	-	SPO0092	-	HSP70 family protein
94	 66.50	0	92595..93185	+	196	56695020	pncA	SPO0093	-	pyrazinamidase/nicotinamidase
95	 62.41	0	93264..95495	+	743	56695022	-	SPO0094	-	sensory box sensor histidine kinase/response regulator
96	 62.80	0	95526..96869	+	447	56695023	pncB	SPO0095	-	nicotinate phosphoribosyltransferase
97	 63.61	0	96926..97840	-	304	56695024	-	SPO0096	-	hypothetical protein
98	 67.08	0	97843..99294	-	483	56695025	-	SPO0097	-	aldehyde dehydrogenase family protein
99	 65.98	0	99759..101357	-	532	56695026	-	SPO0098	-	peptide/opine/nickel uptake ABC transporter ATP-binding protein
100	 66.91	0	101354..102169	-	271	56695027	-	SPO0099	-	peptide/opine/nickel uptake ABC transporter permease
64.59	MEAN

3.55	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.