IslandPathversion 1.0

IslandPath Analysis: Corynebacterium efficiens YS-314



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 63.03 STD DEV: 4.20
Corynebacterium efficiens YS-314, complete genome - 1..3147090
2950 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 63.76	0	1..1722	+	573	25026557	dnaA	CE0001	-	chromosomal replication initiation protein
2	 53.65	-2	2289..2603	-	104	25026558	-	CE0002	-	hypothetical protein
3	 64.39	0	2592..3776	+	394	25026559	-	CE0003	-	DNA polymerase III subunit beta
4	 64.66	0	3878..5074	+	398	25026560	recF	CE0004	-	recombination protein F
5	 64.78	0	5071..5652	+	193	25026561	-	CE0005	-	hypothetical protein
6	 63.13	0	5786..7849	+	687	25026562	gyrB	CE0006	-	DNA gyrase subunit B
7	 66.00	0	7945..8847	+	300	25026563	-	CE0007	-	hypothetical protein
8	 64.60	0	9128..9709	+	193	25026564	-	CE0008	-	hypothetical protein
9	 61.54	0	9994..10422	+	142	25026565	-	CE0009	-	putative transcription regulator
10	 67.95	+1	10419..12371	+	650	25026566	-	CE0010	-	putative cation-transporting ATPase
11	 62.29	0	12368..13030	-	220	25026567	-	CE0011	-	hypothetical protein
12	 62.44	0	13034..13483	-	149	25026568	-	CE0012	-	hypothetical protein
13	 72.35	+2	13701..13964	-	87	25026569	-	CE0013	-	hypothetical protein
14	 70.00	+1	13961..14170	-	69	25026570	-	CE0014	-	hypothetical protein
15	 64.97	0	14297..16888	+	863	25026571	-	CE0015	-	DNA gyrase subunit A
16	 61.16	0	16892..17236	+	114	25026572	-	CE0016	-	hypothetical protein
17	 65.09	0	17585..19357	-	590	25026573	-	CE0017	-	putative ABC transporter permease protein
18	 66.50	0	19514..20725	+	403	25026574	-	CE0018	-	putative transcription regulator
19	 67.80	+1	20848..21816	+	322	25026575	-	CE0019	-	putative lipoprotein
20	 62.34	0	21813..22853	+	346	25026576	-	CE0020	-	putative ABC transporter permease protein
21	 66.27	0	22850..23611	+	253	25026577	-	CE0021	-	putative sugar transport ATP-binding protein
22	 51.91	-2	23915..24097	+	60	25026578	-	CE0022	-	hypothetical protein
23	 62.46	0	24090..25514	+	474	25026579	-	CE0023	-	putative glutamyl-tRNA(Gln) amidotransferase subunit A
24	 61.21	0	25592..26269	+	225	25026580	-	CE0024	-	hypothetical protein
25	 67.19	0	26288..27433	+	381	25026581	-	CE0025	-	hypothetical protein
26	 60.52	0	27422..28543	-	373	25026582	-	CE0026	-	putative regulatory protein
27	 62.01	0	28720..29256	+	178	25026583	-	CE0027	-	hypothetical protein
28	 63.98	0	29344..30198	-	284	25026584	-	CE0028	-	hypothetical protein
29	 61.90	0	30202..30810	+	202	25026585	-	CE0029	-	putative peptidylprolyl isomerase
30	 63.90	0	30892..31578	+	228	25026586	-	CE0030	-	hypothetical protein
31	 59.71	0	32625..32897	-	90	161486001	-	CE0031	-	putative septation inhibitor protein
32	 56.92	-1	32797..32991	+	64	25026588	-	CE0032	-	hypothetical protein
33	 67.42	+1	33123..35105	-	660	25026589	-	CE0033	-	putative serine/threonine-protein kinase
34	 66.92	0	35102..36664	-	520	25026590	-	CE0034	-	putative serine/threonine-protein kinase
35	 65.41	0	36664..38091	-	475	25026591	-	CE0035	-	hypothetical protein
36	 64.53	0	38088..39446	-	452	25026592	-	CE0036	-	putative cell division protein FtsW
37	 65.83	0	39443..40759	-	438	25026593	-	CE0037	-	hypothetical protein
38	 64.74	0	40759..41226	-	155	25026594	-	CE0038	-	hypothetical protein
39	 58.08	-1	41236..42132	-	298	25026595	-	CE0039	-	hypothetical protein
40	 50.75	-2	42648..42848	-	66	25026596	-	CE0040	-	hypothetical protein
41	 60.91	0	42978..44192	+	404	25026597	-	CE0041	-	hypothetical protein
42	 56.41	-1	44230..44385	+	51	25026598	-	CE0042	-	hypothetical protein
43	 53.59	-2	44382..44924	-	180	25026599	-	CE0043	-	hypothetical protein
44	 60.05	0	45178..45555	-	125	25026600	-	CE0044	-	hypothetical protein
45	 59.16	0	45604..46056	+	150	25026601	-	CE0045	-	putative transposase
46	 60.46	0	46431..46913	+	160	25026602	-	CE0046	-	hypothetical protein
47	 60.55	0	46913..48727	+	604	25026603	-	CE0047	-	hypothetical protein
48	 59.94	0	48937..50928	+	663	25026604	-	CE0048	-	putative restriction enzyme subunit S
49	 54.70	-1	50925..52178	+	417	25026605	-	CE0049	-	hypothetical protein
50	 61.85	0	52175..55369	+	1064	25026606	-	CE0050	-	hypothetical protein
51	 58.89	0	55612..55791	+	59	25026607	-	CE0051	-	putative transposase
52	 58.51	-1	55772..56323	+	183	25026608	-	CE0052	-	putative transposase
53	 63.25	0	56864..57886	+	340	25026609	-	CE0053	-	putative alcohol dehydrogenase
54	 65.32	0	58047..58343	-	98	25026610	-	CE0054	-	hypothetical protein
55	 65.00	0	58406..59065	-	219	25026611	-	CE0055	-	hypothetical protein
56	 60.12	0	59112..59432	-	106	25026612	-	CE0056	-	hypothetical protein
57	 62.02	0	59154..59411	+	85	25026613	-	CE0057	-	hypothetical protein
58	 66.67	0	59515..59973	+	152	25026614	-	CE0058	-	hypothetical protein
59	 66.79	0	60221..61888	+	555	25026615	-	CE0059	-	hypothetical protein
60	 63.91	0	62241..63329	+	362	25026616	-	CE0060	-	2-keto-3-deoxygluconate permease
61	 62.37	0	63359..64288	-	309	25026617	-	CE0061	-	putative transcription regulator
62	 57.63	-1	64266..64442	+	58	25026618	-	CE0062	-	hypothetical protein
63	 63.81	0	64623..65288	+	221	25026619	-	CE0063	-	hypothetical protein
64	 64.73	0	65383..65949	+	188	25026620	-	CE0064	-	hypothetical protein
65	 66.51	0	66152..67429	+	425	25026621	-	CE0065	-	hypothetical protein
66	 63.93	0	67464..68231	-	255	25026622	-	CE0066	-	hypothetical protein
67	 63.55	0	68294..69415	-	373	25026623	-	CE0067	-	hypothetical protein
68	 60.61	0	69645..69974	-	109	25026624	-	CE0068	-	hypothetical protein
69	 64.56	0	69945..70940	+	331	25026625	-	CE0069	-	putative ribosomal protein S6 modification protein
70	 57.32	-1	70944..73544	-	866	25026626	-	CE0070	-	hypothetical protein
71	 61.86	0	73541..74893	-	450	25026627	-	CE0071	-	hypothetical protein
72	 65.26	0	75109..77241	-	710	25026628	-	CE0072	-	putative catalase
73	 64.35	0	77471..78892	-	473	25026629	-	CE0073	-	hypothetical protein
74	 54.39	-2	78873..79043	-	56	25026630	-	CE0074	-	hypothetical protein
75	 62.45	0	79015..79251	+	78	25026631	-	CE0075	-	hypothetical protein
76	 56.12	-1	79248..79541	-	97	25026632	-	CE0076	-	hypothetical protein
77	 67.01	0	79555..81291	+	578	25026633	-	CE0077	-	putative copper-transporting ATPase
78	 65.62	0	81362..82507	-	381	25026634	-	CE0078	-	hypothetical protein
79	 63.87	0	82539..84038	-	499	25026635	-	CE0079	-	putative aldehyde dehydrogenase
80	 69.98	+1	84241..85539	+	432	25026636	-	CE0080	-	hypothetical protein
81	 62.39	0	85592..86503	-	303	25026637	-	CE0081	-	hypothetical protein
82	 63.33	0	86710..88176	+	488	25026638	-	CE0082	-	putative phosphate starvation-induced protein PhoH
83	 62.52	0	88186..88884	+	232	25026639	-	CE0083	-	hypothetical protein
84	 59.78	0	88878..89240	-	120	25026640	-	CE0084	-	hypothetical protein
85	 72.88	+2	89305..89481	-	58	25026641	-	CE0085	-	hypothetical protein
86	 63.57	0	89566..89856	-	96	25026642	-	CE0086	-	hypothetical protein
87	 65.79	0	89863..91227	-	454	25026643	-	CE0087	-	hypothetical protein
88	 59.59	0	91407..91844	+	145	25026644	-	CE0088	-	hypothetical protein
89	 64.78	0	91953..92957	+	334	25026645	bioB	CE0089	-	biotin synthase
90	 65.94	0	92957..93232	+	91	25026646	-	CE0090	-	hypothetical protein
91	 71.37	+1	93239..93982	-	247	25026647	-	CE0091	-	hypothetical protein
92	 67.79	+1	94645..95622	+	325	25026648	-	CE0092	-	hypothetical protein
93	 67.89	+1	95627..96685	-	352	25026649	-	CE0093	-	hypothetical protein
94	 65.33	0	96645..98294	-	549	25026650	-	CE0094	-	hypothetical protein
95	 62.76	0	97641..98228	+	195	25026651	-	CE0095	-	putative transcription regulator
96	 66.43	0	98301..99146	-	281	25026652	-	CE0096	-	hypothetical protein
97	 69.64	+1	99234..100409	-	391	25026653	-	CE0097	-	hypothetical protein
98	 67.51	+1	100511..101932	+	473	25026654	-	CE0098	-	hypothetical protein
99	 62.45	0	101969..103438	+	489	25026655	-	CE0099	-	AMP nucleosidase
100	 63.06	0	103534..104226	-	230	25026656	-	CE0100	-	hypothetical protein
63.03	MEAN

4.20	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.