IslandPath Analysis: Borrelia duttonii Ly



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 27.76   STD DEV: 3.62
Borrelia duttonii Ly, complete genome - 1..931674
820 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1	 26.55	0	524..1378	-	284	203283927	-	BDU_1	-	antigen P35-like protein
2	 37.45	+2	2113..3060	-	315	203283928	vlp-c-1	BDU_2	-	vlp protein, gamma subfamily
3	 38.52	+2	3342..4421	-	359	203283929	vlp-c-2	BDU_3	-	vlp protein, gamma subfamily
4	 37.34	+2	7068..8165	-	365	203283930	vlp-a	BDU_5	-	vlp protein, alpha subfamily
5	 25.13	0	12060..12656	+	198	203283931	-	BDU_7	-	hypothetical protein
6	 28.96	0	12771..13868	-	365	203283932	-	BDU_8	-	beta-N-acetylhexosaminidase, putative
7	 25.44	0	13801..15294	-	497	203283933	-	BDU_9	-	hypothetical protein
8	 26.52	0	15349..17139	+	596	203283934	femD	BDU_10	-	phosphoglucomutase
9	 30.20	0	17216..18268	-	350	203283935	trsA	BDU_11	-	tryptophanyl-tRNA synthetase
10	 25.37	0	18265..19356	-	363	203283936	-	BDU_12	-	predicted permease
11	 24.94	0	19470..20327	-	285	203283937	-	BDU_13	-	hypothetical protein
12	 24.32	0	20447..21223	+	258	203283938	-	BDU_14	-	hypothetical protein
13	 22.96	-1	21227..22219	+	330	203283939	-	BDU_15	-	hypothetical protein
14	 25.13	0	22212..22601	+	129	203283940	-	BDU_16	-	holo-acyl-carrier protein synthase
15	 27.68	0	22605..23453	+	282	203283941	-	BDU_17	-	hypothetical protein
16	 25.34	0	23454..24191	+	245	203283942	hisT	BDU_18	-	pseudouridylate synthase I
17	 20.88	-1	24184..24753	+	189	203283943	-	BDU_19	-	hypothetical protein
18	 24.94	0	24746..26722	+	658	203283944	priA	BDU_20	-	primosomal protein N
19	 28.50	0	26719..27339	-	206	203283945	udk	BDU_21	-	uridine kinase
20	 24.62	0	27332..27721	-	129	203283946	glpE	BDU_22	-	GlpE protein (GlpE)
21	 28.05	0	27850..28815	+	321	203283947	-	BDU_23	-	hypothetical protein
22	 25.38	0	28812..29792	-	326	203283948	-	BDU_24	-	ribosomal large subunit pseudouridine synthase D
23	 22.68	-1	29793..30299	-	168	203283949	-	BDU_25	-	hypothetical protein
24	 30.33	0	30307..31971	-	554	203283950	pfpB	BDU_26	-	pyrophosphate--fructose 6-phosphate 1-phosphotransferase,beta subunit
25	 29.18	0	32041..33099	-	352	203283951	queA	BDU_27	-	S-adenosylmethionine-tRNA ribosyltransferase-isomerase (queuine synthetase)
26	 32.45	+1	33083..34105	-	340	203283952	ruvB	BDU_28	-	Holliday junction DNA helicase
27	 26.57	0	34158..34748	-	196	203283953	ruvA	BDU_29	-	Holliday junction DNA helicase
28	 33.33	+1	34831..35562	-	243	203283954	-	BDU_30	-	hypothetical protein
29	 31.00	0	35563..36504	-	313	203283955	folD	BDU_31	-	methylenetetrahydrofolate dehydrogenase
30	 29.66	0	36614..37267	+	217	203283956	-	BDU_32	-	hypothetical protein
31	 26.45	0	37275..38306	+	343	203283957	-	BDU_33	-	hypothetical protein
32	 21.06	-1	38292..38723	-	143	203283958	-	BDU_34	-	hypothetical protein
33	 21.38	-1	38713..39348	-	211	203283959	lepB-1	BDU_35	-	signal peptidase I
34	 28.34	0	39349..40329	-	326	203283960	leB-2	BDU_36	-	signal peptidase I
35	 24.30	0	40531..42003	+	490	203283961	-	BDU_37	-	hypothetical protein
36	 24.22	0	42006..42455	+	149	203283962	smpB	BDU_38	-	SsrA-binding protein
37	 29.52	0	42612..43214	-	200	203283963	-	BDU_39	-	hypothetical protein
38	 26.80	0	43235..45118	-	627	203283964	parC	BDU_40	-	DNA topoisomerase IV, A subunit
39	 28.49	0	45118..46914	-	598	203283965	parE	BDU_41	-	DNA topoisomerase IV, B subunit
40	 25.76	0	46926..47678	-	250	203283966	plsC	BDU_42	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
41	 24.78	0	47686..49146	-	486	203283967	-	BDU_43	-	hypothetical protein
42	 25.71	0	49209..50717	-	502	203283968	-	BDU_44	-	hypothetical protein
43	 23.73	-1	50906..51769	+	287	203283969	cheR-1	BDU_45	-	chemotaxis protein methyltransferase
44	 26.11	0	51810..52487	-	225	203283970	phoU	BDU_46	-	phosphate transport system regulatory protein
45	 22.48	-1	52494..53543	-	349	203283971	-	BDU_47	-	hypothetical protein
46	 22.22	-1	53540..53926	-	128	203283972	-	BDU_48	-	hypothetical protein
47	 24.29	0	53954..56419	-	821	203283973	-	BDU_49	-	P115 protein
48	 29.49	0	56477..57022	+	181	203283974	rnhB	BDU_50	-	ribonuclease H
49	 27.89	0	57103..57396	-	97	203283975	-	BDU_51	-	hypothetical protein
50	 25.74	0	58128..58838	+	236	203283976	-	BDU_54	-	membrane protein
51	 25.00	0	58883..59578	+	231	203283977	-	BDU_55	-	hypothetical protein
52	 28.16	0	59553..60209	-	218	203283978	spoU	BDU_56	-	spoU protein
53	 29.32	0	60290..60961	+	223	203283979	ung	BDU_57	-	uracil DNA glycosylase
54	 28.10	0	61019..61381	-	120	203283980	-	BDU_58	-	preprotein translocase SecG subunit
55	 33.20	+1	61387..62151	-	254	203283981	tpi	BDU_59	-	triosephosphate isomerase
56	 35.03	+2	62153..63331	-	392	203283982	pgk	BDU_60	-	phosphoglycerate kinase
57	 35.12	+2	63361..64368	-	335	203283983	gap	BDU_61	-	glyceraldehyde 3-phosphate dehydrogenase
58	 27.09	0	64441..66426	-	661	203283984	-	BDU_62	-	hypothetical protein
59	 27.31	0	66423..67202	-	259	203283985	tlyC	BDU_63	-	hemolysin
60	 28.86	0	67199..67645	-	148	203283986	-	BDU_64	-	hypothetical protein
61	 29.66	0	67732..68085	-	117	203283987	trxA	BDU_65	-	thioredoxin
62	 24.44	0	68163..68882	+	239	203283988	-	BDU_66	-	hypothetical protein
63	 28.69	0	68956..70011	-	351	203283989	-	BDU_67	-	hypothetical protein
64	 29.89	0	70039..70968	-	309	203283990	fmt	BDU_68	-	methionyl-tRNA formyltransferase
65	 29.12	0	70965..71462	-	165	203283991	def	BDU_69	-	polypeptide deformylase
66	 22.99	-1	71490..72185	-	231	203283992	-	BDU_70	-	hypothetical protein
67	 28.27	0	72182..73960	-	592	203283993	-	BDU_71	-	peptidase, putative
68	 27.29	0	74084..74977	+	297	203283994	-	BDU_72	-	hypothetical protein
69	 28.73	0	74991..76229	+	412	203283995	-	BDU_73	-	aminopeptidase II
70	 27.22	0	76254..76727	+	157	203283996	-	BDU_74	-	hypothetical protein
71	 22.36	-1	76755..78221	+	488	203283997	-	BDU_75	-	hypothetical protein
72	 22.67	-1	78221..80536	+	771	203283998	-	BDU_76	-	hypothetical protein
73	 19.72	-2	80533..81105	+	190	203283999	-	BDU_77	-	hypothetical protein
74	 28.54	0	81139..82182	+	347	203284000	prfB	BDU_78	-	peptide chain release factor RF-2
75	 23.62	-1	82164..83573	+	469	203284001	-	BDU_79	-	hypothetical protein
76	 27.07	0	83625..84470	+	281	203284002	ftsY	BDU_80	-	signal recognition particle-docking protein FtsY
77	 20.64	-1	84467..85522	+	351	203284003	-	BDU_81	-	hypothetical protein
78	 24.14	0	85509..86759	+	416	203284004	-	BDU_82	-	lipoprotein releasing system, permease protein, putative
79	 25.94	0	86760..87449	+	229	203284005	-	BDU_83	-	ABC transporter, ATP-binding protein
80	 23.10	-1	87446..88696	+	416	203284006	-	BDU_84	-	ABC transporter, permease protein
81	 25.95	0	88717..90003	-	428	203284007	-	BDU_85	-	hypothetical protein
82	 26.73	0	89996..90313	-	105	203284008	-	BDU_86	-	hypothetical protein
83	 24.98	0	90478..91746	+	422	203284009	nifS	BDU_87	-	nifS protein
84	 22.98	-1	91892..92287	+	131	203284010	-	BDU_88	-	hypothetical protein
85	 29.10	0	92242..93849	+	535	203284011	-	BDU_89	-	magnesium chelatase family protein
86	 31.15	0	93872..94834	-	320	203284012	ldh	BDU_90	-	L-lactate dehydrogenase
87	 31.53	+1	95012..96679	-	555	203284013	lepA	BDU_91	-	GTP-binding membrane protein
88	 24.78	0	96858..97862	-	334	203284014	-	BDU_92	-	hypothetical protein
89	 38.16	+2	97899..98333	-	144	203284015	atpK	BDU_93	-	V-type ATPase, subunit K
90	 28.43	0	98353..100188	-	611	203284016	atpI	BDU_94	-	V-type ATPase, subunit I
91	 28.48	0	100193..100789	-	198	203284017	atpD	BDU_95	-	V-type ATPase, subunit D
92	 35.47	+2	100792..102099	-	435	203284018	atpB	BDU_96	-	V-type ATPase, subunit B
93	 34.89	+1	102103..103833	-	576	203284019	atpA	BDU_97	-	V-type ATPase, subunit A
94	 25.09	0	103844..104389	-	181	203284020	-	BDU_98	-	hypothetical protein
95	 27.47	0	104399..104995	-	198	203284021	atpE	BDU_99	-	V-type ATPase, subunit E
96	 28.54	0	105102..105497	-	131	203284022	-	BDU_100	-	hypothetical protein
97	 26.43	0	105498..107858	-	786	203284023	mutS_1	BDU_101	-	DNA mismatch repair protein MutS
98	 28.24	0	107806..108747	-	313	203284024	-	BDU_102	-	hypothetical protein
99	 23.40	-1	108744..109508	-	254	203284025	murI	BDU_103	-	glutamate racemase
100	 29.44	0	109627..111012	+	461	203284026	asnS	BDU_104	-	asparaginyl-tRNA synthetase
27.76	MEAN

3.62	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.